IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
144	 55.30	0	195719..196510	+	263	192360296	-	CJA_0144	-	probable partition-related protein
145	 43.48	-1	196552..196758	-	68	192359462	-	CJA_0145	-	hypothetical protein
146	 46.78	0	196789..197502	-	237	192360226	-	CJA_0146	-	hypothetical protein
147	 46.34	-1	197722..198336	-	204	192359307	-	CJA_0147	-	hypothetical protein
148	 44.28	-1	199015..201783	-	922	192359267	-	CJA_0148	-	hypothetical protein
149	 51.83	0	202110..203390	-	426	192360387	-	CJA_0149	-	phosphate regulon sensor protein PhoR
150	 55.65	0	203427..204125	-	232	192361393	phoB	CJA_0150	-	phosphate regulon transcriptional regulatory protein PhoB
151	 58.06	+1	204211..205140	-	309	192362449	ubiA	CJA_0151	-	4-hydroxybenzoate polyprenyl transferase
152	 62.75	+1	205161..205772	-	203	192358861	ubiC	CJA_0152	-	chorismate--pyruvate lyase
153	 54.35	0	205964..206239	+	91	192359929	hup	CJA_0153	-	DNA-binding protein HU
154	 52.19	0	206285..207652	+	455	192358823	-	CJA_0154	-	proton/glutamate symporter
155	 55.22	0	207682..208380	-	232	192359887	-	CJA_0155	-	hypothetical protein
156	 54.21	0	208615..209208	+	197	192360865	hisB	CJA_0156	-	imidazoleglycerol-phosphate dehydratase
157	 54.99	0	209230..209880	+	216	192361662	hisH	CJA_0157	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
158	 56.83	0	209938..210669	+	243	192359699	hisA	CJA_0158	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
159	 55.56	0	210683..211456	+	257	192360508	hisF	CJA_0159	-	imidazoleglycerol phosphate synthase, cyclase subunit
160	 52.30	0	211551..212267	-	238	192359846	-	CJA_0160	-	hypothetical protein
161	 51.78	0	212719..213450	+	243	192360773	-	CJA_0161	-	macrophage infectivity potentiator
162	 52.14	0	213613..214080	-	155	192362153	algQ	CJA_0162	-	transcriptional regulator AlgQ
163	 57.14	0	214176..214658	-	160	192359080	dsbH	CJA_0163	-	protein-disulfide reductase
164	 51.07	0	214932..215399	+	155	192360424	-	CJA_0165	-	Flagellar basal body-associated protein FliL
165	 55.56	0	215396..217006	-	536	192361486	gshA	CJA_0164	-	glutamate--cysteine ligase
166	 51.26	0	217091..217408	-	105	192362486	-	CJA_0166	-	hypothetical protein
167	 51.96	0	217441..218718	-	425	192361647	-	CJA_0167	-	transporter, small conductance mechanosensitive ion channel (MscS) family
168	 49.56	0	218879..219673	-	264	192361656	-	CJA_0168	-	Short-chain alcohol dehydrogenase family protein
169	 48.10	0	219686..220525	-	279	192360849	-	CJA_0169	-	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
170	 49.49	0	220653..223214	-	853	192360542	urh105A	CJA_0170	-	unsaturated rhamnogalacturonyl hydrolase, putative, urh105A
171	 45.10	-1	223310..226021	-	903	192359268	-	CJA_0171	-	TonB-dependent receptor
172	 54.22	0	226264..227733	-	489	192362237	pga28A	CJA_0172	-	polygalacturonase, putative, pga28A
173	 37.78	-2	227896..228030	-	44	192361905	-	CJA_0173	-	hypothetical protein
174	 52.07	0	228491..230011	+	506	192359350	-	CJA_0174	-	dehydratase
175	 55.30	0	230198..231358	+	386	192362509	-	CJA_0175	-	proton-translocating nicotinamide nucleotide transhydrogenase subunit PntAA
176	 47.37	0	231373..231657	+	94	192361450	pntA	CJA_0176	-	NAD(P) transhydrogenase, alpha subunit
177	 52.85	0	231673..233076	+	467	192359751	-	CJA_0177	-	proton-translocating nicotinamide nucleotide transhydrogenase subunit PntB
178	 51.63	0	233154..233552	+	132	192359092	-	CJA_0178	-	glyoxylase family protein
179	 53.99	0	233604..234692	-	362	192360178	kdgK	CJA_0179	-	ketodeoxygluconokinase
180	 50.57	0	234806..236284	+	492	192360295	-	CJA_0180	-	D-mannonate oxidoreductase
181	 52.68	0	236371..237471	+	366	192360184	pme8C	CJA_0181	-	pectin methylesterase, putative, pme8C
182	 54.42	0	237624..239966	+	780	192359031	-	CJA_0182	-	putative methyl-accepting chemotaxis protein
183	 56.28	0	239974..240945	-	323	192361813	fbp	CJA_0183	-	fructose-1,6-bisphosphatase
184	 52.69	0	240961..242040	-	359	192359871	fbaA	CJA_0184	-	fructose-bisphosphate aldolase, class II
185	 58.24	+1	242146..242916	-	256	192358825	-	CJA_0185	-	triosephosphate isomerase
186	 52.26	0	242903..243145	-	80	192362162	-	CJA_0186	-	hypothetical protein
187	 60.28	+1	243444..245024	-	526	192359424	-	CJA_0187	-	putative GGDEF domain protein
188	 58.27	+1	245027..245419	-	130	192360280	-	CJA_0188	-	hypothetical protein
189	 56.19	0	245455..246714	-	419	192361978	-	CJA_0189	-	hypothetical protein
190	 58.15	+1	246845..247678	-	277	192359842	-	CJA_0190	-	response regulator
191	 55.98	0	247757..248533	-	258	192361610	-	CJA_0191	-	hypothetical protein
192	 58.13	+1	248585..248959	-	124	192362435	-	CJA_0192	-	hypothetical protein
193	 53.06	0	248963..249109	+	48	192359529	-	CJA_0193	-	hypothetical protein
194	 59.10	+1	249136..250404	+	422	192359214	-	CJA_0194	-	Peptidase family M48 family
195	 58.65	+1	250575..251123	+	182	192360056	-	CJA_0195	-	TRAP transporter, DctQ-like membrane protein family
196	 55.75	0	251117..252499	+	460	192361832	-	CJA_0196	-	TRAP transporter, DctM subunit
197	 57.32	0	252577..252972	+	131	192360761	-	CJA_0197	-	acyl-CoA hydrolase
198	 52.88	0	253164..253823	+	219	192359365	-	CJA_0198	-	Cytochrome b561 homolog 2
199	 49.74	0	253895..254479	+	194	192360528	ycel3	CJA_0199	-	yceI-like protein, ycel3
200	 47.77	0	254812..255102	+	96	192361363	-	CJA_0200	-	hypothetical protein
201	 46.12	-1	255099..256349	+	416	192358854	-	CJA_0201	-	hypothetical protein
202	 59.77	+1	256425..257294	-	289	192359697	-	CJA_0202	-	conserved hypothetical protein TIGR00255
203	 60.56	+1	257434..258153	+	239	192362066	rph	CJA_0203	-	ribonuclease PH
204	 56.97	0	258427..261036	+	869	192361004	cel3A	CJA_0204	-	glucan 1,4-beta-glucosidase cel3A
205	 53.36	0	261130..261978	-	282	192359927	metF	CJA_0205	-	5,10-methylenetetrahydrofolate reductase
206	 54.28	0	262059..263447	-	462	192360318	ahcY	CJA_0206	-	adenosylhomocysteinase
207	 57.58	+1	263558..264712	-	384	192358797	metK	CJA_0207	-	S-adenosylmethionine synthetase
208	 58.67	+1	264784..265821	-	345	192362087	-	CJA_0208	-	transcriptional regulator, ArsR family
209	 60.66	+1	265919..266101	-	60	192358839	-	CJA_0209	-	hypothetical protein
210	 57.09	0	266158..268161	+	667	192361713	tkt	CJA_0210	-	transketolase
211	 55.16	0	268299..269471	+	390	192360860	pgk	CJA_0211	-	phosphoglycerate kinase
212	 56.11	0	269907..271052	+	381	192361487	pel3A	CJA_0212	-	pectate lyase, putative, pel3A
213	 51.39	0	271358..271501	-	47	192360650	-	CJA_0213	-	hypothetical protein
214	 59.23	+1	271521..275018	+	1165	192359354	glu81A	CJA_0214	-	glucan endo-1,3-beta-glucanase, putative, glu81A
215	 49.04	0	275369..278323	+	984	192361878	-	CJA_0215	-	TonB-dependent receptor
216	 44.67	-1	278418..279140	+	240	192361733	-	CJA_0216	-	hypothetical protein
217	 50.39	0	279153..280166	+	337	192360795	-	CJA_0217	-	Pass1-related protein
218	 48.34	0	280203..281681	+	492	192360438	-	CJA_0218	-	tryptophan halogenase
219	 50.33	0	281757..282215	-	152	192361301	-	CJA_0219	-	hypothetical protein
220	 55.24	0	281932..282036	+	34	192359968	-	CJA_0220	-	hypothetical protein
221	 47.91	0	282357..283049	-	230	192359593	-	CJA_0221	-	hypothetical protein
222	 51.23	0	283112..283273	+	53	192358992	-	CJA_0222	-	hypothetical protein
223	 55.12	0	283555..286101	+	848	192361998	cel3C	CJA_0223	-	glucan 1,4-beta-glucosidase, putative, cel3C
224	 51.42	0	286172..287194	+	340	192360955	glu16B	CJA_0224	-	beta glucanase, putative, glu16B
225	 51.55	0	287247..290024	+	925	192360365	glu16A	CJA_0225	-	beta glucanase, putative, glu16A
226	 54.34	0	290265..291440	-	391	192359115	-	CJA_0226	-	FAD binding domain protein
227	 52.90	0	291425..293479	-	684	192362055	-	CJA_0227	-	hypothetical protein
228	 49.51	0	293497..294819	-	440	192360741	-	CJA_0228	-	hypothetical protein
229	 50.90	0	295153..296313	-	386	192359783	-	CJA_0229	-	transcriptional regulator, AraC family
230	 59.02	+1	296489..297469	+	326	192359056	-	CJA_0230	-	hydrolase, alpha/beta fold family
231	 56.15	0	297542..298501	+	319	192362404	-	CJA_0231	-	Predicted membrane protein
232	 58.37	+1	298589..299818	-	409	192360714	-	CJA_0232	-	D-3-phosphoglycerate dehydrogenase
233	 57.33	0	300067..301308	+	413	192360214	-	CJA_0233	-	putative transmembrane efflux protein
234	 60.03	+1	301360..302082	-	240	192359618	-	CJA_0234	-	putative lipoprotein
235	 60.28	+1	302102..302821	-	239	192359032	-	CJA_0235	-	hypothetical protein
236	 58.25	+1	302983..304242	+	419	192360166	man26C	CJA_0236	-	endo-1, 4-beta mannanase, putative, man26C
237	 56.77	0	304522..305430	+	302	192360577	-	CJA_0237	-	PEP-CTERM putative exosortase interaction domain protein
238	 57.96	+1	305486..306163	-	225	192361815	rpiA	CJA_0238	-	ribose 5-phosphate isomerase A
239	 56.45	0	306162..307805	+	547	192361598	ilvA	CJA_0239	-	threonine ammonia-lyase, biosynthetic
240	 58.36	+1	307862..308860	-	332	192360261	-	CJA_0240	-	Transcriptional regulator
241	 52.30	0	309066..310931	+	621	192359748	-	CJA_0241	-	Na+/glucose symporter
242	 53.55	0	311104..312285	+	393	192362426	unk1	CJA_0242	-	hypothetical protein
243	 52.32	0	312288..313535	+	415	192361142	unk2	CJA_0243	-	Unk2
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.