IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1601	 58.86	+1	1906684..1908207	+	507	192361844	-	CJA_1644	-	putative glycerol kinase
1602	 57.77	+1	1908271..1910631	-	786	192358876	ppkA	CJA_1645	-	serine/threonine protein kinase PpkA
1603	 57.79	+1	1910673..1911539	-	288	192360451	-	CJA_1646	-	protein phosphatase
1604	 54.84	0	1911578..1911670	-	30	192360804	-	CJA_1647	-	hypothetical protein
1605	 58.87	+1	1911714..1914701	-	995	192362280	-	CJA_1648	-	Peptidase M16 inactive domain family
1606	 50.72	0	1914655..1915275	-	206	192359589	-	CJA_1649	-	DTW domain protein
1607	 54.43	0	1915272..1915598	-	108	192362142	-	CJA_1650	-	GIY-YIG catalytic domain protein
1608	 50.00	0	1915727..1916572	+	281	192361318	smtA	CJA_1651	-	smtA protein
1609	 53.29	0	1916691..1917191	-	166	192361284	-	CJA_1652	-	DnaJ domain protein
1610	 50.06	0	1917335..1918990	+	551	192359603	-	CJA_1653	-	putative lipoprotein
1611	 54.68	0	1919000..1919608	+	202	192362346	-	CJA_1654	-	hypothetical protein
1612	 52.93	0	1919778..1920869	+	363	192361759	-	CJA_1655	-	peptidylarginine deiminase-related protein
1613	 55.07	0	1920856..1921752	+	298	192362035	-	CJA_1656	-	glycosyl hydrolase, family 10
1614	 48.61	0	1921884..1922603	+	239	192361108	-	CJA_1657	-	hypothetical protein
1615	 41.77	-1	1922669..1923142	+	157	192360325	bcp	CJA_1658	-	Bcp
1616	 47.07	0	1923361..1923804	+	147	192359315	-	CJA_1659	-	transcriptional regulator, AraC family
1617	 43.86	-1	1923904..1924245	+	113	192361058	-	CJA_1660	-	preprotein translocase, YajC subunit
1618	 48.63	0	1924317..1924682	-	121	192361890	-	CJA_1661	-	DsrC
1619	 46.60	-1	1924651..1924959	-	102	192361814	dsrH	CJA_1662	-	DsrH
1620	 45.90	-1	1924961..1925326	-	121	192359124	-	CJA_1663	-	DsrE/DsrF-like family
1621	 51.26	0	1925336..1925731	-	131	192359860	dsrE	CJA_1664	-	dsrE protein
1622	 47.95	0	1925799..1926482	-	227	192361433	-	CJA_1665	-	integral membrane protein
1623	 51.23	0	1926954..1929797	-	947	192361431	-	CJA_1667	-	ribonuclease, Rne/Rng family protein
1624	 53.97	0	1930523..1930648	+	41	192362395	-	CJA_1668	-	hypothetical protein
1625	 52.76	0	1930730..1931779	+	349	192359429	-	CJA_1669	-	pseudouridine synthase, RluA family subfamily
1626	 50.46	0	1931800..1932447	+	215	192359856	-	CJA_1670	-	HAD-superfamily hydrolase
1627	 51.37	0	1932455..1933036	-	193	192360385	-	CJA_1671	-	septum formation protein Maf
1628	 48.74	0	1933132..1933767	+	211	192359678	-	CJA_1672	-	predicted metal-binding/nucleic acid-binding protein
1629	 49.73	0	1933811..1933993	+	60	192361012	rpmF	CJA_1673	-	ribosomal protein L32
1630	 47.70	0	1934017..1935018	+	333	192359728	plsX	CJA_1674	-	fatty acid/phospholipid synthesis protein PlsX
1631	 47.92	0	1935040..1935978	+	312	192359314	fabD	CJA_1675	-	malonyl CoA-acyl carrier protein transacylase
1632	 49.73	0	1936003..1936746	+	247	192362071	fabG	CJA_1676	-	3-oxoacyl-(acyl-carrier-protein) reductase
1633	 41.77	-1	1936933..1937169	+	78	192361508	acpP	CJA_1677	-	acyl carrier protein
1634	 50.52	0	1937368..1938606	+	412	192360236	-	CJA_1678	-	Beta-ketoacyl synthase, N-terminal domain protein
1635	 50.74	0	1938690..1939568	+	292	192361812	pabC	CJA_1679	-	4-amino-4-deoxychorismate lyase
1636	 52.16	0	1939581..1940669	+	362	192362312	-	CJA_1680	-	Uncharacterized BCR, YceG family
1637	 49.63	0	1940795..1942531	+	578	192361969	glnS	CJA_1681	-	glutaminyl-tRNA synthetase
1638	 47.89	0	1942537..1943937	+	466	192361138	cysS	CJA_1682	-	cysteinyl-tRNA synthetase
1639	 43.08	-1	1943951..1944145	+	64	192359015	-	CJA_1683	-	hypothetical protein
1640	 50.31	0	1944463..1945275	-	270	192361942	-	CJA_1684	-	cytochrome C assembly protein
1641	 51.53	0	1945481..1946854	+	457	192361389	ffh	CJA_1685	-	signal recognition particle protein
1642	 48.70	0	1946919..1947341	-	140	192359850	-	CJA_1686	-	conserved hypothetical protein TIGR00149
1643	 46.56	-1	1947677..1948039	-	120	192362099	-	CJA_1687	-	type III effector HopPmaJ(Pto)
1644	 50.74	0	1948196..1949884	+	562	192361601	sfcA1	CJA_1688	-	NAD-dependent malic enzyme
1645	 46.32	-1	1949896..1950534	+	212	192360947	-	CJA_1689	-	yecA family protein subfamily
1646	 50.96	0	1950718..1951080	+	120	192361035	-	CJA_1690	-	hypothetical protein
1647	 48.68	0	1951186..1951791	+	201	192359942	-	CJA_1691	-	aldehyde dehydrogenase
1648	 52.42	0	1954148..1955326	+	392	192361509	fadA	CJA_1693	-	acetyl-CoA C-acyltransferase FadA
1649	 49.97	0	1955447..1956901	+	484	192360257	-	CJA_1694	-	hypothetical protein
1650	 48.48	0	1956973..1957236	+	87	192359447	-	CJA_1695	-	hypothetical protein
1651	 56.86	0	1957349..1957756	-	135	192361863	-	CJA_1696	-	hypothetical protein
1652	 50.25	0	1957749..1958351	-	200	192361112	lexA	CJA_1697	-	LexA repressor
1653	 51.41	0	1958427..1958780	+	117	192358901	-	CJA_1699	-	hypothetical protein
1654	 53.17	0	1958457..1958819	-	120	192359818	-	CJA_1698	-	putative lipoprotein
1655	 51.02	0	1958930..1959760	-	276	192359704	-	CJA_1700	-	oxidoreductase, short chain dehydrogenase/reductase family
1656	 51.47	0	1959896..1960303	+	135	192361805	-	CJA_1701	-	flagellar protein FliS
1657	 50.18	0	1960313..1960597	+	94	192360777	-	CJA_1702	-	hypothetical protein
1658	 50.77	0	1960720..1961109	+	129	192360151	-	CJA_1703	-	flagellar protein FliS
1659	 50.24	0	1961367..1962821	+	484	192360348	fleQ	CJA_1704	-	regulatory protein
1660	 47.22	0	1962965..1964116	+	383	192359413	-	CJA_1705	-	ISCja2, transposase
1661	 54.53	0	1964186..1965610	-	474	192362464	-	CJA_1706	-	Superfamily II DNA and RNA helicase
1662	 50.69	0	1965785..1967080	-	431	192361465	-	CJA_1707	-	bicyclomycin resistance protein
1663	 54.02	0	1967438..1968718	+	426	192359837	fleS	CJA_1708	-	two-component sensor
1664	 53.15	0	1968734..1970257	+	507	192359170	fleR	CJA_1709	-	transcriptional activator
1665	 47.09	0	1970288..1970476	-	62	192360062	-	CJA_1710	-	hypothetical protein
1666	 48.84	0	1970484..1970741	-	85	192362349	-	CJA_1711	-	hypothetical protein
1667	 52.80	0	1970740..1971114	+	124	192361742	fliE	CJA_1712	-	flagellar hook-basal body complex protein (FliE)
1668	 54.44	0	1971193..1972902	+	569	192359622	fliF	CJA_1713	-	flagellar M-ring protein FliF
1669	 53.01	0	1972931..1973926	+	331	192360504	fliG	CJA_1714	-	flagellar motor switch protein FliG
1670	 56.45	0	1973945..1974766	+	273	192361340	fliH	CJA_1715	-	Flagellar assembly protein FliH
1671	 59.40	+1	1974729..1976159	+	476	192362186	fliI	CJA_1716	-	flagellum-specific ATP synthase FliI
1672	 50.88	0	1976168..1976623	+	151	192359835	-	CJA_1717	-	putative flagellar protein FliJ
1673	 44.77	-1	1976839..1977144	+	101	192360682	-	CJA_1718	-	hypothetical protein
1674	 52.22	0	1977206..1978984	+	592	192359685	-	CJA_1719	-	response regulator
1675	 47.78	0	1979000..1979359	+	119	192360724	-	CJA_1720	-	Hpt domain protein
1676	 53.94	0	1979532..1980914	+	460	192362472	-	CJA_1721	-	putative flagellar hook-length control protein FliK
1677	 49.65	0	1981105..1981674	+	189	192359510	-	CJA_1722	-	Flagellar basal body-associated protein FliL
1678	 51.96	0	1981686..1982705	+	339	192360300	fliM	CJA_1723	-	flagellar motor switch protein FliM
1679	 50.25	0	1982695..1983096	+	133	192361158	fliN	CJA_1724	-	flagellar protein
1680	 50.63	0	1983144..1983779	+	211	192359151	-	CJA_1725	-	flagellar protein FliO
1681	 49.88	0	1983790..1984629	+	279	192359973	fliP	CJA_1726	-	Flagellar biosynthetic protein fliP
1682	 51.85	0	1984642..1984911	+	89	192359213	fliQ	CJA_1727	-	flagellar biosynthetic protein FliQ
1683	 47.58	0	1984919..1985704	+	261	192359985	fliR	CJA_1728	-	flagellar biosynthetic protein FliR
1684	 48.86	0	1985704..1986843	+	379	192360845	flhB	CJA_1729	-	flagellar biosynthetic protein FlhB
1685	 50.14	0	1986948..1987667	+	239	192361189	-	CJA_1730	-	hypothetical protein
1686	 48.47	0	1987906..1988493	-	195	192362492	-	CJA_1731	-	putative lipoprotein
1687	 43.18	-1	1988752..1989015	+	87	192358951	-	CJA_1732	-	hypothetical protein
1688	 47.62	0	1989063..1991246	+	727	192359763	-	CJA_1733	-	Response regulator receiver domain protein
1689	 45.19	-1	1991291..1992100	-	269	192361651	xth	CJA_1734	-	exodeoxyribonuclease III
1690	 47.19	0	1992170..1994320	-	716	192359176	prc	CJA_1735	-	tail-specific protease
1691	 50.16	0	1994568..1995512	-	314	192359953	-	CJA_1736	-	hypothetical protein
1692	 49.18	0	1995625..1996053	-	142	192360210	-	CJA_1737	-	hypothetical protein
1693	 47.47	0	1995877..1995975	+	32	192362178	-	CJA_1738	-	hypothetical protein
1694	 37.50	-2	1996196..1996339	-	47	192359621	-	CJA_1739	-	hypothetical protein
1695	 50.84	0	1996371..1997438	-	355	192359620	-	CJA_1740	-	phospho-2-dehydro-3-deoxyheptonate aldolase
1696	 51.72	0	1997706..1999913	+	735	192360384	-	CJA_1741	-	phospholipase, patatin family
1697	 46.88	0	2000001..2000753	-	250	192361204	-	CJA_1742	-	putative lipoprotein
1698	 53.09	0	2000797..2001717	-	306	192362059	-	CJA_1743	-	transcriptional regulator, LysR family
1699	 55.98	0	2001857..2003278	+	473	192360076	leuC	CJA_1744	-	3-isopropylmalate dehydratase, large subunit
1700	 49.38	0	2003291..2003938	+	215	192360888	leuD	CJA_1745	-	3-isopropylmalate dehydratase, small subunit
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.