IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1559	 51.22	0	1861175..1862035	+	286	192360988	purU	CJA_1602	-	formyltetrahydrofolate deformylase
1560	 58.31	+1	1862047..1863231	-	394	192362042	-	CJA_1603	-	transporter, major facilitator family
1561	 54.40	0	1863505..1865118	+	537	192360301	lctP	CJA_1604	-	L-lactate permease
1562	 55.86	0	1865189..1867705	-	838	192361441	gt35A	CJA_1605	-	carbohydrate phosphosrylase, putative, gt35A
1563	 51.86	0	1867766..1868758	-	330	192362477	-	CJA_1606	-	D-lactate dehydrogenase
1564	 52.45	0	1868860..1869471	-	203	192361811	-	CJA_1607	-	putative lipoprotein
1565	 49.23	0	1869440..1870414	-	324	192359021	-	CJA_1608	-	hypothetical protein
1566	 51.24	0	1870426..1871190	-	254	192362156	-	CJA_1609	-	ABC transporter, ATP-binding protein
1567	 58.07	+1	1871193..1872320	-	375	192359616	-	CJA_1610	-	ABC-type transport system, permease component
1568	 57.08	0	1872348..1872827	+	159	192361009	-	CJA_1612	-	hypothetical protein
1569	 57.76	+1	1872817..1873692	-	291	192361858	-	CJA_1611	-	putative pseudouridylate synthase
1570	 48.99	0	1873673..1874215	+	180	192361940	-	CJA_1613	-	hypothetical protein
1571	 54.01	0	1874187..1875980	+	597	192361064	recJ	CJA_1614	-	single-stranded-DNA-specific exonuclease RecJ
1572	 51.02	0	1875999..1876637	-	212	192359766	tesA	CJA_1615	-	acyl-CoA thioesterase I
1573	 56.58	0	1876705..1877388	+	227	192358986	-	CJA_1616	-	ABC transporter, ATP-binding protein
1574	 55.37	0	1877392..1879887	+	831	192359398	-	CJA_1617	-	efflux ABC transporter, permease protein
1575	 53.36	0	1879900..1881267	+	455	192362523	-	CJA_1618	-	MATE domain protein
1576	 40.72	-2	1881722..1882195	+	157	192361090	-	CJA_1619	-	GtrA-like protein family
1577	 45.12	-1	1882222..1883808	+	528	192362082	-	CJA_1620	-	FAD binding domain protein
1578	 45.64	-1	1883927..1885576	+	549	192359278	-	CJA_1621	-	hypothetical protein
1579	 48.37	0	1885578..1886561	-	327	192360485	gt2H	CJA_1622	-	glycosyl transferase, putative, gt2H
1580	 49.56	0	1887089..1887316	-	75	192362229	-	CJA_1623	-	hypothetical protein
1581	 54.46	0	1887649..1888074	+	141	192360032	hmrR	CJA_1624	-	heavy metal regulator HmrR
1582	 48.07	0	1888198..1888767	+	189	192361124	dcd	CJA_1625	-	deoxycytidine triphosphate deaminase
1583	 48.39	0	1888773..1888958	+	61	192359282	-	CJA_1626	-	hypothetical protein
1584	 52.47	0	1889027..1889512	-	161	192360344	-	CJA_1627	-	FKBP-type peptidyl-prolyl cis-trans isomerase
1585	 46.86	0	1889569..1890300	-	243	192360260	-	CJA_1628	-	hypothetical protein
1586	 55.46	0	1890338..1891015	-	225	192362478	purN	CJA_1629	-	phosphoribosylglycinamide formyltransferase
1587	 55.19	0	1891019..1892125	-	368	192359337	purM	CJA_1630	-	phosphoribosylformylglycinamidine cyclo-ligase
1588	 54.35	0	1892292..1893704	+	470	192360333	-	CJA_1631	-	hypothetical protein
1589	 56.81	0	1893713..1894432	+	239	192361067	-	CJA_1632	-	DnaA family protein
1590	 55.56	0	1894665..1896545	+	626	192361876	cel9B	CJA_1633	-	endo-1,4-beta glucanase, putative, cel9B
1591	 57.29	0	1896596..1897555	-	319	192360547	-	CJA_1634	-	putative ADA regulatory protein
1592	 54.24	0	1897661..1899205	-	514	192359773	cutE	CJA_1635	-	apolipoprotein N-acyltransferase
1593	 51.55	0	1899272..1900144	-	290	192361929	-	CJA_1636	-	magnesium and cobalt efflux protein CorC
1594	 54.12	0	1900164..1900697	-	177	192359229	-	CJA_1637	-	hypothetical protein
1595	 56.89	0	1900709..1901803	-	364	192360273	-	CJA_1638	-	PhoH-like protein
1596	 54.72	0	1901949..1902911	-	320	192359764	-	CJA_1639	-	hypothetical protein
1597	 52.95	0	1902961..1904331	-	456	192361583	miaB	CJA_1640	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1598	 57.25	0	1904593..1906026	-	477	192362407	-	CJA_1641	-	ATP-dependent RNA helicase, DEAD box family
1599	 51.22	0	1906063..1906185	-	40	192359287	-	CJA_1642	-	hypothetical protein
1600	 47.95	0	1906221..1906562	+	113	192360331	-	CJA_1643	-	hypothetical protein
1601	 58.86	+1	1906684..1908207	+	507	192361844	-	CJA_1644	-	putative glycerol kinase
1602	 57.77	+1	1908271..1910631	-	786	192358876	ppkA	CJA_1645	-	serine/threonine protein kinase PpkA
1603	 57.79	+1	1910673..1911539	-	288	192360451	-	CJA_1646	-	protein phosphatase
1604	 54.84	0	1911578..1911670	-	30	192360804	-	CJA_1647	-	hypothetical protein
1605	 58.87	+1	1911714..1914701	-	995	192362280	-	CJA_1648	-	Peptidase M16 inactive domain family
1606	 50.72	0	1914655..1915275	-	206	192359589	-	CJA_1649	-	DTW domain protein
1607	 54.43	0	1915272..1915598	-	108	192362142	-	CJA_1650	-	GIY-YIG catalytic domain protein
1608	 50.00	0	1915727..1916572	+	281	192361318	smtA	CJA_1651	-	smtA protein
1609	 53.29	0	1916691..1917191	-	166	192361284	-	CJA_1652	-	DnaJ domain protein
1610	 50.06	0	1917335..1918990	+	551	192359603	-	CJA_1653	-	putative lipoprotein
1611	 54.68	0	1919000..1919608	+	202	192362346	-	CJA_1654	-	hypothetical protein
1612	 52.93	0	1919778..1920869	+	363	192361759	-	CJA_1655	-	peptidylarginine deiminase-related protein
1613	 55.07	0	1920856..1921752	+	298	192362035	-	CJA_1656	-	glycosyl hydrolase, family 10
1614	 48.61	0	1921884..1922603	+	239	192361108	-	CJA_1657	-	hypothetical protein
1615	 41.77	-1	1922669..1923142	+	157	192360325	bcp	CJA_1658	-	Bcp
1616	 47.07	0	1923361..1923804	+	147	192359315	-	CJA_1659	-	transcriptional regulator, AraC family
1617	 43.86	-1	1923904..1924245	+	113	192361058	-	CJA_1660	-	preprotein translocase, YajC subunit
1618	 48.63	0	1924317..1924682	-	121	192361890	-	CJA_1661	-	DsrC
1619	 46.60	-1	1924651..1924959	-	102	192361814	dsrH	CJA_1662	-	DsrH
1620	 45.90	-1	1924961..1925326	-	121	192359124	-	CJA_1663	-	DsrE/DsrF-like family
1621	 51.26	0	1925336..1925731	-	131	192359860	dsrE	CJA_1664	-	dsrE protein
1622	 47.95	0	1925799..1926482	-	227	192361433	-	CJA_1665	-	integral membrane protein
1623	 51.23	0	1926954..1929797	-	947	192361431	-	CJA_1667	-	ribonuclease, Rne/Rng family protein
1624	 53.97	0	1930523..1930648	+	41	192362395	-	CJA_1668	-	hypothetical protein
1625	 52.76	0	1930730..1931779	+	349	192359429	-	CJA_1669	-	pseudouridine synthase, RluA family subfamily
1626	 50.46	0	1931800..1932447	+	215	192359856	-	CJA_1670	-	HAD-superfamily hydrolase
1627	 51.37	0	1932455..1933036	-	193	192360385	-	CJA_1671	-	septum formation protein Maf
1628	 48.74	0	1933132..1933767	+	211	192359678	-	CJA_1672	-	predicted metal-binding/nucleic acid-binding protein
1629	 49.73	0	1933811..1933993	+	60	192361012	rpmF	CJA_1673	-	ribosomal protein L32
1630	 47.70	0	1934017..1935018	+	333	192359728	plsX	CJA_1674	-	fatty acid/phospholipid synthesis protein PlsX
1631	 47.92	0	1935040..1935978	+	312	192359314	fabD	CJA_1675	-	malonyl CoA-acyl carrier protein transacylase
1632	 49.73	0	1936003..1936746	+	247	192362071	fabG	CJA_1676	-	3-oxoacyl-(acyl-carrier-protein) reductase
1633	 41.77	-1	1936933..1937169	+	78	192361508	acpP	CJA_1677	-	acyl carrier protein
1634	 50.52	0	1937368..1938606	+	412	192360236	-	CJA_1678	-	Beta-ketoacyl synthase, N-terminal domain protein
1635	 50.74	0	1938690..1939568	+	292	192361812	pabC	CJA_1679	-	4-amino-4-deoxychorismate lyase
1636	 52.16	0	1939581..1940669	+	362	192362312	-	CJA_1680	-	Uncharacterized BCR, YceG family
1637	 49.63	0	1940795..1942531	+	578	192361969	glnS	CJA_1681	-	glutaminyl-tRNA synthetase
1638	 47.89	0	1942537..1943937	+	466	192361138	cysS	CJA_1682	-	cysteinyl-tRNA synthetase
1639	 43.08	-1	1943951..1944145	+	64	192359015	-	CJA_1683	-	hypothetical protein
1640	 50.31	0	1944463..1945275	-	270	192361942	-	CJA_1684	-	cytochrome C assembly protein
1641	 51.53	0	1945481..1946854	+	457	192361389	ffh	CJA_1685	-	signal recognition particle protein
1642	 48.70	0	1946919..1947341	-	140	192359850	-	CJA_1686	-	conserved hypothetical protein TIGR00149
1643	 46.56	-1	1947677..1948039	-	120	192362099	-	CJA_1687	-	type III effector HopPmaJ(Pto)
1644	 50.74	0	1948196..1949884	+	562	192361601	sfcA1	CJA_1688	-	NAD-dependent malic enzyme
1645	 46.32	-1	1949896..1950534	+	212	192360947	-	CJA_1689	-	yecA family protein subfamily
1646	 50.96	0	1950718..1951080	+	120	192361035	-	CJA_1690	-	hypothetical protein
1647	 48.68	0	1951186..1951791	+	201	192359942	-	CJA_1691	-	aldehyde dehydrogenase
1648	 52.42	0	1954148..1955326	+	392	192361509	fadA	CJA_1693	-	acetyl-CoA C-acyltransferase FadA
1649	 49.97	0	1955447..1956901	+	484	192360257	-	CJA_1694	-	hypothetical protein
1650	 48.48	0	1956973..1957236	+	87	192359447	-	CJA_1695	-	hypothetical protein
1651	 56.86	0	1957349..1957756	-	135	192361863	-	CJA_1696	-	hypothetical protein
1652	 50.25	0	1957749..1958351	-	200	192361112	lexA	CJA_1697	-	LexA repressor
1653	 51.41	0	1958427..1958780	+	117	192358901	-	CJA_1699	-	hypothetical protein
1654	 53.17	0	1958457..1958819	-	120	192359818	-	CJA_1698	-	putative lipoprotein
1655	 51.02	0	1958930..1959760	-	276	192359704	-	CJA_1700	-	oxidoreductase, short chain dehydrogenase/reductase family
1656	 51.47	0	1959896..1960303	+	135	192361805	-	CJA_1701	-	flagellar protein FliS
1657	 50.18	0	1960313..1960597	+	94	192360777	-	CJA_1702	-	hypothetical protein
1658	 50.77	0	1960720..1961109	+	129	192360151	-	CJA_1703	-	flagellar protein FliS
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.