IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1456	 49.78	0	1726815..1727270	+	151	192359605	-	CJA_1493	-	molybdenum cofactor biosynthesis protein E
1457	 50.57	0	1727316..1728632	-	438	192362514	-	CJA_1494	-	Glucose/galactose transporter
1458	 51.31	0	1728881..1729987	+	368	192360127	-	CJA_1495	-	transcriptional regulator, LacI family
1459	 50.95	0	1730045..1731043	-	332	192359017	glk	CJA_1496	-	glucokinase
1460	 51.16	0	1731380..1733842	+	820	192359181	cel3B	CJA_1497	-	glucan 1,4-beta-glucosidase, putative, cel3B
1461	 45.94	-1	1734298..1735503	+	401	192360915	-	CJA_1498	-	hypothetical protein
1462	 51.76	0	1735580..1736860	-	426	192360292	gltA	CJA_1499	-	citrate synthase I
1463	 54.47	0	1737045..1737167	+	40	192361481	-	CJA_1500	-	hypothetical protein
1464	 49.87	0	1737437..1737823	+	128	192362455	-	CJA_1501	-	Succinate dehydrogenase cytochrome b subunit
1465	 48.12	0	1737817..1738188	+	123	192360343	-	CJA_1502	-	succinate dehydrogenase hydrophobic membrane anchor protein
1466	 54.15	0	1738188..1739960	+	590	192362080	sdhA	CJA_1503	-	succinate dehydrogenase, flavoprotein subunit
1467	 50.07	0	1739975..1740679	+	234	192358883	sdhB	CJA_1504	-	succinate dehydrogenase, iron-sulfur protein
1468	 52.05	0	1740878..1743709	+	943	192359900	sucA	CJA_1505	-	2-oxoglutarate dehydrogenase, E1 component
1469	 53.22	0	1743769..1744965	+	398	192359922	sucB	CJA_1506	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
1470	 52.71	0	1745069..1746508	+	479	192361694	-	CJA_1507	-	dihydrolipoamide dehydrogenase
1471	 52.56	0	1746583..1747794	+	403	192359200	sucC	CJA_1508	-	succinyl-CoA synthetase beta chain
1472	 53.49	0	1747805..1748677	+	290	192360780	-	CJA_1510	-	succinyl-CoA synthetase alpha chain
1473	 45.74	-1	1748664..1748792	-	42	192360027	-	CJA_1509	-	hypothetical protein
1474	 49.61	0	1749054..1750976	+	640	192358903	speA	CJA_1511	-	arginine decarboxylase
1475	 48.75	0	1751009..1752208	+	399	192359525	-	CJA_1512	-	saccharopine dehydrogenase
1476	 49.92	0	1752186..1753409	+	407	192360578	nspC	CJA_1513	-	carboxynorspermidine decarboxylase
1477	 51.83	0	1753438..1755075	-	545	192361197	-	CJA_1514	-	Na+/H+ antiporter
1478	 41.38	-1	1755295..1756599	+	434	192360227	-	CJA_1515	-	putative membrane-fusion protein
1479	 40.44	-2	1756599..1758752	+	717	192361580	-	CJA_1516	-	putative toxin secretion ABC transporter, ATP-binding subunit/permease protein
1480	 43.14	-1	1758944..1759198	+	84	192361892	-	CJA_1517	-	hypothetical protein
1481	 27.12	-2	1759277..1760113	+	278	192359366	-	CJA_1518	-	hypothetical protein
1482	 28.29	-2	1760161..1761012	+	283	192359280	-	CJA_1519	-	hypothetical protein
1483	 29.34	-2	1761060..1761911	+	283	192362441	-	CJA_1520	-	hypothetical protein
1484	 35.64	-2	1761877..1763700	+	607	192362489	-	CJA_1521	-	hypothetical protein
1485	 33.11	-2	1764176..1765993	+	605	192360861	amy13B	CJA_1522	-	alpha amylase, putative, amy13B
1486	 51.83	0	1766437..1768269	-	610	192359817	-	CJA_1523	-	ABC-type multidrug efflux pump
1487	 50.89	0	1768470..1768862	+	130	192358800	-	CJA_1524	-	hypothetical protein
1488	 52.76	0	1768874..1769398	+	174	192360956	-	CJA_1525	-	hypothetical protein
1489	 49.81	0	1769454..1770479	-	341	192359583	-	CJA_1526	-	hypothetical protein
1490	 47.61	0	1770590..1771843	-	417	192362521	-	CJA_1527	-	hypothetical protein
1491	 52.07	0	1772441..1773454	+	337	192361303	nahO	CJA_1528	-	acetaldehyde dehydrogenase
1492	 53.42	0	1773493..1774149	-	218	192360473	-	CJA_1529	-	hypothetical protein
1493	 49.69	0	1774603..1776864	+	753	192360072	-	CJA_1530	-	fatty acid cis/trans isomerase
1494	 50.98	0	1776873..1777739	-	288	192362285	-	CJA_1531	-	hypothetical protein
1495	 49.55	0	1778430..1778540	-	36	192361729	-	CJA_1536	-	hypothetical protein
1496	 56.24	0	1778562..1779674	-	370	192359231	-	CJA_1537	-	hypothetical protein
1497	 56.90	0	1779715..1783113	-	1132	192360562	-	CJA_1538	-	hypothetical protein
1498	 56.50	0	1783124..1783723	-	199	192361418	-	CJA_1539	-	hypothetical protein
1499	 56.72	0	1783723..1785210	-	495	192362220	-	CJA_1540	-	hypothetical protein
1500	 55.31	0	1785321..1786667	-	448	192359254	-	CJA_1541	-	hypothetical protein
1501	 57.20	0	1786664..1786927	-	87	192359188	-	CJA_1542	-	Putative transcriptional regulator
1502	 58.72	+1	1787375..1788544	-	389	192361295	-	CJA_1543	-	hypothetical protein
1503	 58.23	+1	1788569..1789492	-	307	192361830	-	CJA_1544	-	dienelactone hydrolase domain protein
1504	 58.20	+1	1789627..1790547	+	306	192359615	-	CJA_1545	-	putative HTH-type transcriptional regulator YcjZ
1505	 54.24	0	1790708..1792945	-	745	192361043	norB	CJA_1546	-	nitric oxide reductase qNor type
1506	 58.93	+1	1793063..1793437	+	124	192361838	-	CJA_1547	-	hypothetical protein
1507	 55.67	0	1793507..1794670	+	387	192362238	-	CJA_1548	-	NnrS protein superfamily
1508	 49.28	0	1794654..1795136	+	160	192359950	-	CJA_1549	-	rrf2 family protein
1509	 40.47	-2	1795167..1797899	-	910	192361152	-	CJA_1550	-	hypothetical protein
1510	 55.34	0	1797890..1800088	-	732	192362232	-	CJA_1551	-	putative signaling protein
1511	 49.16	0	1800312..1801259	+	315	192359502	-	CJA_1552	-	ABC transporter, ATP-binding protein
1512	 46.64	-1	1801256..1802029	+	257	192359063	-	CJA_1553	-	ABC-type multidrug transport system, permease component
1513	 51.76	0	1802064..1802888	+	274	192361267	-	CJA_1554	-	GTP cyclohydrolase I family protein
1514	 49.39	0	1802896..1804278	-	460	192360627	-	CJA_1555	-	probable adenylate cyclase
1515	 45.68	-1	1804257..1804418	+	53	192361820	-	CJA_1557	-	hypothetical protein
1516	 50.93	0	1804275..1804382	-	35	192359570	-	CJA_1556	-	hypothetical protein
1517	 48.08	0	1804420..1805667	-	415	192360668	-	CJA_1558	-	hypothetical protein
1518	 54.12	0	1805853..1806410	+	185	192362331	-	CJA_1559	-	nitroreductase family protein
1519	 50.71	0	1806988..1807338	-	116	192361525	-	CJA_1562	-	hypothetical protein
1520	 54.65	0	1807398..1808396	-	332	192360246	-	CJA_1563	-	Luciferase-like monooxygenase
1521	 44.63	-1	1808585..1808761	-	58	192361336	-	CJA_1564	-	hypothetical protein
1522	 51.14	0	1808775..1810925	+	716	192360057	-	CJA_1565	-	hypothetical protein
1523	 46.41	-1	1810993..1811451	-	152	192359242	-	CJA_1566	-	putative lipoprotein
1524	 50.00	0	1811646..1812065	-	139	192361624	-	CJA_1567	-	hypothetical protein
1525	 57.21	0	1812330..1813619	-	429	192360823	nrdB	CJA_1568	-	ribonucleoside reductase, beta subunit
1526	 57.17	0	1813771..1816707	-	978	192361574	nrdA	CJA_1569	-	ribonucleoside reductase, large chain
1527	 57.88	+1	1817548..1819584	-	678	192360282	-	CJA_1570	-	Tat (twin-arginine translocation) pathway signal sequence domain protein
1528	 49.77	0	1819788..1820663	+	291	192359376	-	CJA_1571	-	hypothetical protein
1529	 52.62	0	1821023..1823842	+	939	192361961	-	CJA_1572	-	putative TonB dependent receptor
1530	 53.13	0	1823913..1825301	+	462	192361125	-	CJA_1573	-	Ser/Thr protein phosphatase family protein family
1531	 60.09	+1	1825438..1826349	+	303	192359397	-	CJA_1574	-	ABC transporter substrate binding protein
1532	 53.61	0	1826485..1827426	-	313	192360232	-	CJA_1575	-	polyphosphate kinase family protein
1533	 52.67	0	1827946..1828338	+	130	192359867	-	CJA_1576	-	PIN (PilT N terminus) domain
1534	 53.68	0	1828473..1829612	+	379	192361471	-	CJA_1577	-	fic family protein
1535	 47.76	0	1829819..1831003	+	394	192361977	-	CJA_1578	-	putative ATP-dependent DNA helicase
1536	 49.04	0	1831000..1831986	+	328	192359043	-	CJA_1579	-	phage-related regulatory protein cII
1537	 45.08	-1	1832390..1833232	+	280	192360125	-	CJA_1580	-	hypothetical protein
1538	 47.31	0	1833421..1834257	+	278	192362123	mod	CJA_1581	-	type III restriction-modification system methyltransferase
1539	 51.20	0	1834257..1837268	+	1003	192359394	res	CJA_1582	-	type III restriction system endonuclease
1540	 45.95	-1	1837439..1838104	-	221	192360267	csm2	CJA_1583	-	CRISPR-associated protein, Csm2 family
1541	 49.18	0	1838117..1839397	-	426	192361329	rloA	CJA_1584	-	RloA protein
1542	 60.10	+1	1839659..1841197	+	512	192359002	-	CJA_1585	-	hypothetical protein
1543	 61.42	+1	1841200..1841961	+	253	192359586	-	CJA_1586	-	hypothetical protein
1544	 56.87	0	1841958..1845263	+	1101	192361080	-	CJA_1587	-	ATP synthase, Delta/Epsilon chain, long alpha-helix domain
1545	 56.81	0	1845247..1846392	+	381	192361667	-	CJA_1588	-	hypothetical protein
1546	 41.64	-1	1846479..1847549	+	356	192359305	-	CJA_1589	-	hypothetical protein
1547	 66.89	+2	1847583..1849370	-	595	192360359	afuB_2	CJA_1590	-	ABC transporter permease protein
1548	 63.70	+2	1849437..1850414	-	325	192361403	-	CJA_1591	-	ABC transporter, substrate binding protein
1549	 57.52	+1	1850748..1851884	-	378	192361106	-	CJA_1592	-	ABC transporter ATP-binding protein
1550	 58.51	+1	1852020..1853894	-	624	192361654	-	CJA_1593	-	hypothetical protein
1551	 52.29	0	1853929..1854081	+	50	192359414	-	CJA_1594	-	hypothetical protein
1552	 51.18	0	1854362..1855504	-	380	192360288	-	CJA_1595	-	hypothetical protein
1553	 58.82	+1	1855605..1856636	-	343	192361606	-	CJA_1596	-	hypothetical protein
1554	 51.04	0	1856652..1857131	-	159	192362431	-	CJA_1597	-	hypothetical protein
1555	 52.53	0	1857253..1858143	+	296	192361406	-	CJA_1598	-	Auxin Efflux Carrier superfamily
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.