IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1380	 58.17	+1	1651218..1652135	+	305	192360556	-	CJA_1415	-	lipid A biosynthesis lauroyl acyltransferase
1381	 35.02	-2	1653154..1653390	-	78	192361162	-	CJA_1416	-	hypothetical protein
1382	 42.09	-1	1653472..1654008	+	178	192362254	-	CJA_1417	-	hypothetical protein
1383	 40.00	-2	1654071..1654175	+	34	192361846	-	CJA_1418	-	hypothetical protein
1384	 45.79	-1	1654208..1655764	+	518	192359156	-	CJA_1419	-	Transposase IS4 family
1385	 36.65	-2	1655933..1656775	+	280	192359901	-	CJA_1420	-	hypothetical protein
1386	 52.70	0	1656785..1657579	-	264	192360835	-	CJA_1421	-	IS3 family element, transposase orfB
1387	 41.06	-2	1657839..1659029	-	396	192361126	-	CJA_1422	-	relative of glycosyl transferase family GT1, gt*A
1388	 40.09	-2	1659042..1659899	-	285	192362134	-	CJA_1423	-	hypothetical protein
1389	 43.64	-1	1660182..1660928	+	248	192359533	-	CJA_1424	-	SapC family protein
1390	 46.46	-1	1660934..1661032	+	32	192360567	-	CJA_1425	-	hypothetical protein
1391	 51.11	0	1661036..1661350	-	104	192361732	-	CJA_1426	-	putative sigma 54 modulation protein
1392	 50.88	0	1661561..1662415	-	284	192359039	-	CJA_1427	-	transposase
1393	 46.33	-1	1662412..1662711	-	99	192360140	-	CJA_1428	-	transposase
1394	 53.76	0	1662869..1663798	+	309	192361213	-	CJA_1429	-	conserved hypothetical protein TIGR01777
1395	 47.50	0	1663946..1664425	+	159	192362218	-	CJA_1430	-	16 kDa heat shock protein A
1396	 49.70	0	1664476..1665483	-	335	192359511	-	CJA_1431	-	transcriptional regulator, AraC family
1397	 53.78	0	1665609..1667525	+	638	192359688	-	CJA_1432	-	probable beta-ketoacyl synthase
1398	 52.04	0	1667659..1667952	+	97	192360102	rpsP	CJA_1433	-	ribosomal protein S16
1399	 50.65	0	1667967..1668503	+	178	192360672	rimM	CJA_1434	-	16S rRNA processing protein RimM
1400	 54.70	0	1668500..1669276	+	258	192359118	trmD	CJA_1435	-	tRNA (guanine-N1)-methyltransferase
1401	 49.29	0	1669309..1669659	+	116	192360163	rplS	CJA_1436	-	ribosomal protein L19
1402	 52.67	0	1669735..1670634	+	299	192360546	xerD	CJA_1437	-	tyrosine recombinase XerD
1403	 52.70	0	1670670..1671485	+	271	192361175	dsbC	CJA_1438	-	thiol:disulfide interchange protein DsbC
1404	 51.30	0	1671635..1672942	+	435	192358857	hom	CJA_1439	-	homoserine dehydrogenase
1405	 53.65	0	1672964..1674361	+	465	192361770	thrC	CJA_1440	-	threonine synthase
1406	 51.83	0	1674447..1675295	+	282	192360534	-	CJA_1441	-	thioredoxin-like protein
1407	 51.69	0	1675573..1676373	+	266	192361897	-	CJA_1442	-	hypothetical protein
1408	 55.70	0	1676525..1677463	-	312	192362386	-	CJA_1443	-	predicted GTPase
1409	 51.26	0	1677470..1677787	-	105	192361173	-	CJA_1444	-	hypothetical protein
1410	 56.33	0	1677916..1679124	+	402	192359520	-	CJA_1446	-	Sugar efflux transporter A
1411	 55.35	0	1679105..1679767	-	220	192359777	-	CJA_1445	-	hypothetical protein
1412	 49.76	0	1679785..1680204	-	139	192361958	holC	CJA_1447	-	DNA polymerase III, chi subunit
1413	 59.31	+1	1680228..1681817	-	529	192360702	-	CJA_1448	-	cytosol aminopeptidase
1414	 55.04	0	1682057..1683157	+	366	192359904	-	CJA_1449	-	putative permease, YjgP/YjgQ family superfamily
1415	 52.22	0	1683150..1684208	+	352	192358887	-	CJA_1450	-	putative permease, YjgP/YjgQ family
1416	 53.04	0	1684233..1684709	-	158	192362032	-	CJA_1451	-	putative RDD family
1417	 53.85	0	1684725..1685621	-	298	192360313	-	CJA_1452	-	hypothetical protein
1418	 53.33	0	1685618..1685722	-	34	192361660	-	CJA_1453	-	hypothetical protein
1419	 55.89	0	1685985..1687079	+	364	192360885	queA	CJA_1456	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1420	 54.97	0	1687122..1688258	+	378	192360495	tgt	CJA_1457	-	queuine tRNA-ribosyltransferase
1421	 50.59	0	1688443..1690320	+	625	192359607	secD	CJA_1458	-	protein-export membrane protein SecD
1422	 49.23	0	1690333..1691496	+	387	192362116	secF	CJA_1459	-	protein-export membrane protein SecF
1423	 49.70	0	1691483..1691647	+	54	192362131	-	CJA_1460	-	hypothetical protein
1424	 48.88	0	1691666..1693672	+	668	192360040	-	CJA_1461	-	two-component hybrid sensor and regulator
1425	 50.49	0	1694107..1696350	+	747	192359027	cel5A	CJA_1462	-	endo-1,4-beta glucanase, cel5A
1426	 53.36	0	1696431..1697234	-	267	192361503	suhB	CJA_1463	-	extragenic suppressor protein SuhB
1427	 56.56	0	1697479..1698339	+	286	192360664	-	CJA_1464	-	RNA methyltransferase, TrmH family, group 1
1428	 54.60	0	1698538..1699026	+	162	192359869	iscR	CJA_1465	-	iron-sulfur cluster assembly transcription factor IscR
1429	 57.30	0	1699047..1700210	+	387	192360188	-	CJA_1466	-	cysteine desulfurase used in synthesis of Fe-S cluster (tRNA 4-thiouridine sulfurtransferase )
1430	 50.94	0	1700238..1701674	+	478	192359328	sufB	CJA_1467	-	FeS assembly protein SufB
1431	 50.98	0	1701726..1702490	+	254	192362310	sufC	CJA_1468	-	FeS assembly ATPase SufC
1432	 53.95	0	1702494..1703798	+	434	192361506	sufD	CJA_1469	-	FeS assembly protein SufD
1433	 53.24	0	1703795..1705060	+	421	192359601	-	CJA_1470	-	selenocysteine lyase
1434	 53.23	0	1705075..1705446	+	123	192358912	-	CJA_1471	-	HesB protein
1435	 54.98	0	1705519..1706040	+	173	192361887	-	CJA_1472	-	Domain of unknown function domain protein
1436	 54.60	0	1706086..1706715	-	209	192361253	-	CJA_1473	-	transcriptional regulator, TetR family
1437	 56.18	0	1706828..1709974	-	1048	192358947	acrB	CJA_1474	-	AcrB/AcrD/AcrF family protein
1438	 58.01	+1	1709978..1711144	-	388	192359524	acrA	CJA_1475	-	multidrug resistance protein
1439	 53.33	0	1711365..1711799	+	144	192361068	-	CJA_1476	-	Fe-S metabolism associated domain protein
1440	 53.52	0	1712013..1712438	+	141	192359340	ndk	CJA_1477	-	nucleotide diphosphate kinase
1441	 52.94	0	1712477..1713685	+	402	192359958	-	CJA_1478	-	radical SAM enzyme, Cfr family
1442	 49.11	0	1713713..1714498	+	261	192361665	pilF	CJA_1479	-	type IV pilus biogenesis protein PilF
1443	 51.96	0	1714554..1715498	+	314	192360405	-	CJA_1480	-	putative DNA-binding protein
1444	 50.76	0	1715570..1716694	+	374	192358785	ispG	CJA_1481	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1445	 51.89	0	1716717..1717988	+	423	192360368	hisS	CJA_1482	-	histidyl-tRNA synthetase
1446	 50.43	0	1718054..1718755	+	233	192361013	-	CJA_1483	-	hypothetical protein
1447	 50.98	0	1718752..1719981	+	409	192361515	-	CJA_1484	-	PQQ enzyme repeat domain protein
1448	 51.75	0	1720107..1721507	+	466	192362315	-	CJA_1485	-	GTP-binding protein EngA
1449	 51.27	0	1721598..1722818	+	406	192359794	-	CJA_1486	-	response regulator
1450	 48.65	0	1722815..1723297	+	160	192360609	-	CJA_1487	-	anti-anti-sigma factor
1451	 49.67	0	1723340..1723798	-	152	192361202	-	CJA_1488	-	hypothetical protein
1452	 51.83	0	1723788..1724744	-	318	192362065	tal	CJA_1489	-	transaldolase
1453	 55.56	0	1724913..1725938	-	341	192359553	-	CJA_1490	-	tRNA-dihydrouridine synthase A
1454	 53.86	0	1726076..1726567	+	163	192361857	moaC	CJA_1491	-	molybdenum cofactor biosynthesis protein C
1455	 49.40	0	1726564..1726812	+	82	192361144	moaDE	CJA_1492	-	molybdenum cofactor biosynthesis protein D/E
1456	 49.78	0	1726815..1727270	+	151	192359605	-	CJA_1493	-	molybdenum cofactor biosynthesis protein E
1457	 50.57	0	1727316..1728632	-	438	192362514	-	CJA_1494	-	Glucose/galactose transporter
1458	 51.31	0	1728881..1729987	+	368	192360127	-	CJA_1495	-	transcriptional regulator, LacI family
1459	 50.95	0	1730045..1731043	-	332	192359017	glk	CJA_1496	-	glucokinase
1460	 51.16	0	1731380..1733842	+	820	192359181	cel3B	CJA_1497	-	glucan 1,4-beta-glucosidase, putative, cel3B
1461	 45.94	-1	1734298..1735503	+	401	192360915	-	CJA_1498	-	hypothetical protein
1462	 51.76	0	1735580..1736860	-	426	192360292	gltA	CJA_1499	-	citrate synthase I
1463	 54.47	0	1737045..1737167	+	40	192361481	-	CJA_1500	-	hypothetical protein
1464	 49.87	0	1737437..1737823	+	128	192362455	-	CJA_1501	-	Succinate dehydrogenase cytochrome b subunit
1465	 48.12	0	1737817..1738188	+	123	192360343	-	CJA_1502	-	succinate dehydrogenase hydrophobic membrane anchor protein
1466	 54.15	0	1738188..1739960	+	590	192362080	sdhA	CJA_1503	-	succinate dehydrogenase, flavoprotein subunit
1467	 50.07	0	1739975..1740679	+	234	192358883	sdhB	CJA_1504	-	succinate dehydrogenase, iron-sulfur protein
1468	 52.05	0	1740878..1743709	+	943	192359900	sucA	CJA_1505	-	2-oxoglutarate dehydrogenase, E1 component
1469	 53.22	0	1743769..1744965	+	398	192359922	sucB	CJA_1506	-	2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase
1470	 52.71	0	1745069..1746508	+	479	192361694	-	CJA_1507	-	dihydrolipoamide dehydrogenase
1471	 52.56	0	1746583..1747794	+	403	192359200	sucC	CJA_1508	-	succinyl-CoA synthetase beta chain
1472	 53.49	0	1747805..1748677	+	290	192360780	-	CJA_1510	-	succinyl-CoA synthetase alpha chain
1473	 45.74	-1	1748664..1748792	-	42	192360027	-	CJA_1509	-	hypothetical protein
1474	 49.61	0	1749054..1750976	+	640	192358903	speA	CJA_1511	-	arginine decarboxylase
1475	 48.75	0	1751009..1752208	+	399	192359525	-	CJA_1512	-	saccharopine dehydrogenase
1476	 49.92	0	1752186..1753409	+	407	192360578	nspC	CJA_1513	-	carboxynorspermidine decarboxylase
1477	 51.83	0	1753438..1755075	-	545	192361197	-	CJA_1514	-	Na+/H+ antiporter
1478	 41.38	-1	1755295..1756599	+	434	192360227	-	CJA_1515	-	putative membrane-fusion protein
1479	 40.44	-2	1756599..1758752	+	717	192361580	-	CJA_1516	-	putative toxin secretion ABC transporter, ATP-binding subunit/permease protein
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.