IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1326	 54.11	0	1582106..1584733	+	875	192362500	alaS	CJA_1359	-	alanyl-tRNA synthetase
1327	 50.96	0	1584887..1586134	+	415	192361488	lysC	CJA_1360	-	aspartate kinase, monofunctional class
1328	 43.23	-1	1586352..1586543	+	63	192360389	csrA	CJA_1361	-	carbon storage regulator
1329	 51.03	0	1587069..1589933	-	954	192359270	valS	CJA_1363	-	valyl-tRNA synthetase
1330	 43.26	-1	1590106..1591122	+	338	192360245	lcbA	CJA_1364	-	capsular polysaccharide synthesis
1331	 49.64	0	1591126..1593228	-	700	192362062	-	CJA_1365	-	hypothetical protein
1332	 51.55	0	1593327..1594523	-	398	192360977	gt4F	CJA_1366	-	glycosyl transferase, putative, gt4F
1333	 49.39	0	1594550..1595446	-	298	192359924	gt2F	CJA_1367	-	glycosyl transferase, putative, gt2F
1334	 48.03	0	1595412..1597289	-	625	192361822	-	CJA_1368	-	hypothetical protein
1335	 50.72	0	1597311..1598414	-	367	192360931	gt9B	CJA_1369	-	lipopolysaccharide heptosyltransferase, putative, gt9B
1336	 47.22	0	1598383..1598778	-	131	192360089	-	CJA_1370	-	hypothetical protein
1337	 54.24	0	1598945..1599652	-	235	192358915	-	CJA_1371	-	metallo-beta-lactamase family protein
1338	 53.11	0	1599735..1600553	-	272	192359724	-	CJA_1372	-	hypothetical protein
1339	 52.54	0	1600572..1601102	-	176	192358909	-	CJA_1373	-	sulfurtransferase
1340	 48.72	0	1601122..1601589	-	155	192361394	-	CJA_1374	-	transcriptional activator
1341	 50.88	0	1601677..1601790	+	37	192360551	-	CJA_1375	-	cyd operon protein YbgT
1342	 53.63	0	1601887..1603044	+	385	192359329	-	CJA_1376	-	hypothetical protein
1343	 53.77	0	1603136..1603546	+	136	192362249	-	CJA_1377	-	Lactoylglutathione lyase
1344	 48.67	0	1603593..1603931	+	112	192360750	-	CJA_1378	-	antibiotic biosynthesis monooxygenase family protein
1345	 57.49	0	1604031..1605545	+	504	192360175	gltX	CJA_1379	-	glutamyl-tRNA synthetase
1346	 44.17	-1	1605847..1606215	-	122	192360848	-	CJA_1381	-	hypothetical protein
1347	 48.34	0	1606330..1607628	-	432	192361221	-	CJA_1382	-	methyl-accepting chemotaxis protein
1348	 33.33	-2	1607797..1607967	+	56	192362275	-	CJA_1383	-	hypothetical protein
1349	 47.90	0	1608083..1609579	+	498	192359161	-	CJA_1384	-	hypothetical protein
1350	 53.15	0	1609634..1610617	+	327	192359741	-	CJA_1385	-	hypothetical protein
1351	 56.73	0	1610625..1611590	-	321	192360796	-	CJA_1386	-	dihydrouridine synthase family protein
1352	 53.37	0	1611683..1613164	+	493	192359487	-	CJA_1387	-	ATP-dependent RNA helicase, DEAD box family
1353	 43.14	-1	1613475..1613576	+	33	192360458	-	CJA_1388	-	hypothetical protein
1354	 50.56	0	1613548..1614348	+	266	192361208	phoH	CJA_1389	-	PhoH-like protein
1355	 42.34	-1	1614332..1614442	+	36	192362273	-	CJA_1390	-	hypothetical protein
1356	 52.38	0	1614494..1615354	+	286	192359084	rrmA	CJA_1391	-	rRNA guanine-N1-methyltransferase
1357	 53.94	0	1615603..1617402	+	599	192358872	-	CJA_1392	-	probable agglutination protein
1358	 53.30	0	1617512..1619665	+	717	192362507	-	CJA_1393	-	toxin secretion ATP-binding protein
1359	 54.29	0	1619665..1621110	+	481	192361457	-	CJA_1394	-	HlyD-family secretion protein
1360	 56.51	0	1621107..1621697	+	196	192359096	-	CJA_1395	-	putative two-component response regulator
1361	 53.32	0	1621911..1629059	+	2382	192359277	-	CJA_1396	-	putative hemolysin
1362	 52.34	0	1629078..1629440	+	120	192360727	-	CJA_1397	-	hypothetical protein
1363	 51.84	0	1629449..1631350	-	633	192360164	-	CJA_1398	-	EAL domain protein
1364	 55.86	0	1631353..1632120	-	255	192360105	-	CJA_1399	-	hypothetical protein
1365	 50.05	0	1632245..1634320	-	691	192360410	-	CJA_1400	-	GGDEF domain protein
1366	 50.12	0	1634343..1635599	-	418	192361769	-	CJA_1401	-	Bacterial extracellular solute-binding protein domain protein
1367	 51.47	0	1635938..1638154	+	738	192362533	amy13C	CJA_1402	-	alpha amylase, putative, amy13C
1368	 52.74	0	1638287..1639636	+	449	192359313	-	CJA_1403	-	alkaline phosphatase III
1369	 54.26	0	1639642..1641753	-	703	192360298	-	CJA_1404	-	oxidoreductase alpha (molybdopterin) subunit
1370	 61.90	+1	1641794..1641982	+	62	192360946	-	CJA_1405	-	regulator protein PecM
1371	 58.09	+1	1642054..1642776	+	240	192362017	-	CJA_1406	-	two-component response regulator CreB
1372	 54.48	0	1642773..1644200	+	475	192358981	creC	CJA_1407	-	two-component sensor CreC
1373	 52.19	0	1644275..1645621	+	448	192359931	creD	CJA_1408	-	inner membrane protein CreD
1374	 54.41	0	1645888..1646907	-	339	192360126	-	CJA_1409	-	oxidoreductase, aldo/keto reductase family
1375	 49.64	0	1647008..1647418	-	136	192361166	-	CJA_1410	-	hypothetical protein
1376	 53.78	0	1647591..1648832	+	413	192361691	-	CJA_1411	-	Short-chain alcohol dehydrogenase superfamily
1377	 52.21	0	1648897..1649802	+	301	192360768	-	CJA_1412	-	acyltransferase family protein
1378	 56.00	0	1649913..1650137	+	74	192361758	-	CJA_1413	-	hypothetical protein
1379	 52.31	0	1650364..1651143	+	259	192359565	-	CJA_1414	-	putative outer membrane protein
1380	 58.17	+1	1651218..1652135	+	305	192360556	-	CJA_1415	-	lipid A biosynthesis lauroyl acyltransferase
1381	 35.02	-2	1653154..1653390	-	78	192361162	-	CJA_1416	-	hypothetical protein
1382	 42.09	-1	1653472..1654008	+	178	192362254	-	CJA_1417	-	hypothetical protein
1383	 40.00	-2	1654071..1654175	+	34	192361846	-	CJA_1418	-	hypothetical protein
1384	 45.79	-1	1654208..1655764	+	518	192359156	-	CJA_1419	-	Transposase IS4 family
1385	 36.65	-2	1655933..1656775	+	280	192359901	-	CJA_1420	-	hypothetical protein
1386	 52.70	0	1656785..1657579	-	264	192360835	-	CJA_1421	-	IS3 family element, transposase orfB
1387	 41.06	-2	1657839..1659029	-	396	192361126	-	CJA_1422	-	relative of glycosyl transferase family GT1, gt*A
1388	 40.09	-2	1659042..1659899	-	285	192362134	-	CJA_1423	-	hypothetical protein
1389	 43.64	-1	1660182..1660928	+	248	192359533	-	CJA_1424	-	SapC family protein
1390	 46.46	-1	1660934..1661032	+	32	192360567	-	CJA_1425	-	hypothetical protein
1391	 51.11	0	1661036..1661350	-	104	192361732	-	CJA_1426	-	putative sigma 54 modulation protein
1392	 50.88	0	1661561..1662415	-	284	192359039	-	CJA_1427	-	transposase
1393	 46.33	-1	1662412..1662711	-	99	192360140	-	CJA_1428	-	transposase
1394	 53.76	0	1662869..1663798	+	309	192361213	-	CJA_1429	-	conserved hypothetical protein TIGR01777
1395	 47.50	0	1663946..1664425	+	159	192362218	-	CJA_1430	-	16 kDa heat shock protein A
1396	 49.70	0	1664476..1665483	-	335	192359511	-	CJA_1431	-	transcriptional regulator, AraC family
1397	 53.78	0	1665609..1667525	+	638	192359688	-	CJA_1432	-	probable beta-ketoacyl synthase
1398	 52.04	0	1667659..1667952	+	97	192360102	rpsP	CJA_1433	-	ribosomal protein S16
1399	 50.65	0	1667967..1668503	+	178	192360672	rimM	CJA_1434	-	16S rRNA processing protein RimM
1400	 54.70	0	1668500..1669276	+	258	192359118	trmD	CJA_1435	-	tRNA (guanine-N1)-methyltransferase
1401	 49.29	0	1669309..1669659	+	116	192360163	rplS	CJA_1436	-	ribosomal protein L19
1402	 52.67	0	1669735..1670634	+	299	192360546	xerD	CJA_1437	-	tyrosine recombinase XerD
1403	 52.70	0	1670670..1671485	+	271	192361175	dsbC	CJA_1438	-	thiol:disulfide interchange protein DsbC
1404	 51.30	0	1671635..1672942	+	435	192358857	hom	CJA_1439	-	homoserine dehydrogenase
1405	 53.65	0	1672964..1674361	+	465	192361770	thrC	CJA_1440	-	threonine synthase
1406	 51.83	0	1674447..1675295	+	282	192360534	-	CJA_1441	-	thioredoxin-like protein
1407	 51.69	0	1675573..1676373	+	266	192361897	-	CJA_1442	-	hypothetical protein
1408	 55.70	0	1676525..1677463	-	312	192362386	-	CJA_1443	-	predicted GTPase
1409	 51.26	0	1677470..1677787	-	105	192361173	-	CJA_1444	-	hypothetical protein
1410	 56.33	0	1677916..1679124	+	402	192359520	-	CJA_1446	-	Sugar efflux transporter A
1411	 55.35	0	1679105..1679767	-	220	192359777	-	CJA_1445	-	hypothetical protein
1412	 49.76	0	1679785..1680204	-	139	192361958	holC	CJA_1447	-	DNA polymerase III, chi subunit
1413	 59.31	+1	1680228..1681817	-	529	192360702	-	CJA_1448	-	cytosol aminopeptidase
1414	 55.04	0	1682057..1683157	+	366	192359904	-	CJA_1449	-	putative permease, YjgP/YjgQ family superfamily
1415	 52.22	0	1683150..1684208	+	352	192358887	-	CJA_1450	-	putative permease, YjgP/YjgQ family
1416	 53.04	0	1684233..1684709	-	158	192362032	-	CJA_1451	-	putative RDD family
1417	 53.85	0	1684725..1685621	-	298	192360313	-	CJA_1452	-	hypothetical protein
1418	 53.33	0	1685618..1685722	-	34	192361660	-	CJA_1453	-	hypothetical protein
1419	 55.89	0	1685985..1687079	+	364	192360885	queA	CJA_1456	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1420	 54.97	0	1687122..1688258	+	378	192360495	tgt	CJA_1457	-	queuine tRNA-ribosyltransferase
1421	 50.59	0	1688443..1690320	+	625	192359607	secD	CJA_1458	-	protein-export membrane protein SecD
1422	 49.23	0	1690333..1691496	+	387	192362116	secF	CJA_1459	-	protein-export membrane protein SecF
1423	 49.70	0	1691483..1691647	+	54	192362131	-	CJA_1460	-	hypothetical protein
1424	 48.88	0	1691666..1693672	+	668	192360040	-	CJA_1461	-	two-component hybrid sensor and regulator
1425	 50.49	0	1694107..1696350	+	747	192359027	cel5A	CJA_1462	-	endo-1,4-beta glucanase, cel5A
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.