IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
86	 54.97	0	130948..132093	-	381	192361321	pilU	CJA_0086	-	twitching motility protein PilU
87	 56.71	0	132115..133149	-	344	192362112	pilT	CJA_0087	-	twitching motility protein
88	 58.74	+1	133093..133899	+	268	192361248	-	CJA_0088	-	conserved hypothetical protein TIGR00044
89	 59.61	+1	133949..134770	+	273	192360538	proC	CJA_0089	-	pyrroline-5-carboxylate reductase
90	 55.15	0	134794..135375	+	193	192359255	-	CJA_0090	-	YGGT family protein
91	 55.23	0	135376..135681	+	101	192362044	-	CJA_0091	-	conserved hypothetical protein TIGR00251
92	 58.26	+1	135849..137870	+	673	192360981	-	CJA_0092	-	hypothetical protein
93	 55.56	0	137928..138107	-	59	192359895	-	CJA_0093	-	Tetraacyldisaccharide-1-P 4-kinase
94	 49.66	0	138199..138639	-	146	192358892	-	CJA_0094	-	Excinuclease ATPase subunit
95	 54.85	0	138686..139108	-	140	192359787	-	CJA_0095	-	hypothetical protein
96	 60.81	+1	139105..139923	-	272	192358985	-	CJA_0096	-	hypothetical protein
97	 60.68	+1	139923..141107	-	394	192359537	-	CJA_0097	-	Beta-ketoacyl synthase
98	 55.81	0	141070..141999	-	309	192362460	-	CJA_0098	-	acyltransferase
99	 61.46	+1	142293..143675	-	460	192359138	pigH	CJA_0099	-	AMP-ligase
100	 53.69	0	143687..144295	-	202	192359276	-	CJA_0100	-	ketosynthase
101	 51.61	0	144288..144566	-	92	192360338	acpC	CJA_0101	-	acyl carrier protein
102	 57.48	0	144645..145406	-	253	192361475	-	CJA_0102	-	ubiquinone/menaquinone biosynthesis methlytransferase UbiE
103	 46.51	-1	145488..145616	+	42	192362204	-	CJA_0103	-	hypothetical protein
104	 58.66	+1	145623..146621	+	332	192358813	fkbO	CJA_0104	-	FkbO protein
105	 59.45	+1	146603..147406	+	267	192360506	-	CJA_0105	-	acyltransferase family protein
106	 56.72	0	147441..147983	-	180	192358970	-	CJA_0106	-	hypothetical protein
107	 55.75	0	148048..148890	+	280	192359784	-	CJA_0107	-	hypothetical protein
108	 46.24	-1	148992..149363	+	123	192359515	-	CJA_0108	-	acyl carrier protein
109	 58.40	+1	149390..149788	+	132	192362466	-	CJA_0109	-	AMP-binding enzyme family protein
110	 58.03	+1	149799..150551	+	250	192359725	gt2J	CJA_0110	-	glycosyl transferase, putative, gt2J
111	 53.66	0	150572..150994	+	140	192358942	-	CJA_0111	-	4-hydroxybenzoyl-CoA thioesterase domain protein
112	 54.22	0	150996..151694	+	232	192359379	-	CJA_0112	-	hypothetical protein
113	 55.88	0	151711..154167	+	818	192360964	-	CJA_0113	-	hypothetical protein
114	 56.90	0	154160..154753	+	197	192362365	-	CJA_0114	-	hypothetical protein
115	 56.03	0	154761..155249	+	162	192361585	-	CJA_0115	-	hypothetical protein
116	 55.01	0	155252..155980	+	242	192359753	-	CJA_0116	-	putative 3-oxoacyl-(acyl-carrier-protein) reductase
117	 54.83	0	155980..157212	+	410	192358956	fabF-2	CJA_0117	-	3-oxoacyl-(acyl-carrier-protein) synthase II
118	 48.92	0	157248..157991	+	247	192361252	-	CJA_0118	-	hypothetical protein
119	 57.31	0	158133..159275	+	380	192362095	metX	CJA_0119	-	homoserine O-acetyltransferase
120	 47.45	0	159280..159867	+	195	192359074	metW	CJA_0120	-	methionine biosynthesis protein MetW
121	 47.81	0	159881..160336	+	151	192359808	-	CJA_0121	-	hypothetical protein
122	 56.55	0	160339..160941	+	200	192361716	rdgB	CJA_0122	-	non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
123	 52.12	0	160941..162122	+	393	192362341	-	CJA_0123	-	putative oxygen-independent coproporphyrinogen III oxidase
124	 43.97	-1	162194..164035	+	613	192359378	-	CJA_0124	-	hypothetical protein
125	 52.22	0	164022..165848	+	608	192360216	recQ	CJA_0125	-	ATP-dependent DNA helicase RecQ
126	 51.36	0	166129..166605	+	158	192362175	-	CJA_0126	-	hypothetical protein
127	 53.38	0	166720..177969	+	3749	192359225	-	CJA_0127	-	RHS Repeat family
128	 44.16	-1	178821..179771	-	316	192360063	-	CJA_0128	-	Integrase core domain protein
129	 55.51	0	179794..181146	+	450	192360884	-	CJA_0129	-	cytoplasmic membrane protein
130	 51.11	0	181215..181529	+	104	192360806	-	CJA_0130	-	IS66 family element, Orf1 protein
131	 46.44	-1	181526..181876	+	116	192361639	-	CJA_0131	-	IS66 family element, Orf2 protein
132	 46.40	-1	181909..183477	+	522	192360629	-	CJA_0132	-	IS66 family element, transposase
133	 52.24	0	183532..184044	+	170	192361470	-	CJA_0133	-	Rhs family protein
134	 48.24	0	184053..184817	+	254	192359384	-	CJA_0134	-	Rhs family protein
135	 37.82	-2	185163..185630	-	155	192359990	-	CJA_0135	-	hypothetical protein
136	 51.12	0	186606..188567	-	653	192360782	-	CJA_0136	-	phospholipase/carboxylesterase
137	 56.46	0	188809..189141	+	110	192361795	-	CJA_0137	-	Peptidase propeptide and YPEB domain protein
138	 59.12	+1	189162..189479	+	105	192359442	-	CJA_0138	-	Peptidase propeptide and YPEB domain protein
139	 58.56	+1	189479..190144	+	221	192361100	-	CJA_0139	-	DNA-binding response regulator
140	 63.98	+2	190141..191481	+	446	192359809	-	CJA_0140	-	sensor histidine kinase
141	 55.06	0	191519..193327	+	602	192358964	-	CJA_0141	-	ABC transporter, ATP-binding protein
142	 50.72	0	193338..194165	-	275	192362420	-	CJA_0142	-	metallo-beta-lactamase superfamily domain protein
143	 54.47	0	194224..195420	-	398	192361590	-	CJA_0143	-	drug resistance transporter, Bcr/CflA subfamily
144	 55.30	0	195719..196510	+	263	192360296	-	CJA_0144	-	probable partition-related protein
145	 43.48	-1	196552..196758	-	68	192359462	-	CJA_0145	-	hypothetical protein
146	 46.78	0	196789..197502	-	237	192360226	-	CJA_0146	-	hypothetical protein
147	 46.34	-1	197722..198336	-	204	192359307	-	CJA_0147	-	hypothetical protein
148	 44.28	-1	199015..201783	-	922	192359267	-	CJA_0148	-	hypothetical protein
149	 51.83	0	202110..203390	-	426	192360387	-	CJA_0149	-	phosphate regulon sensor protein PhoR
150	 55.65	0	203427..204125	-	232	192361393	phoB	CJA_0150	-	phosphate regulon transcriptional regulatory protein PhoB
151	 58.06	+1	204211..205140	-	309	192362449	ubiA	CJA_0151	-	4-hydroxybenzoate polyprenyl transferase
152	 62.75	+1	205161..205772	-	203	192358861	ubiC	CJA_0152	-	chorismate--pyruvate lyase
153	 54.35	0	205964..206239	+	91	192359929	hup	CJA_0153	-	DNA-binding protein HU
154	 52.19	0	206285..207652	+	455	192358823	-	CJA_0154	-	proton/glutamate symporter
155	 55.22	0	207682..208380	-	232	192359887	-	CJA_0155	-	hypothetical protein
156	 54.21	0	208615..209208	+	197	192360865	hisB	CJA_0156	-	imidazoleglycerol-phosphate dehydratase
157	 54.99	0	209230..209880	+	216	192361662	hisH	CJA_0157	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
158	 56.83	0	209938..210669	+	243	192359699	hisA	CJA_0158	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
159	 55.56	0	210683..211456	+	257	192360508	hisF	CJA_0159	-	imidazoleglycerol phosphate synthase, cyclase subunit
160	 52.30	0	211551..212267	-	238	192359846	-	CJA_0160	-	hypothetical protein
161	 51.78	0	212719..213450	+	243	192360773	-	CJA_0161	-	macrophage infectivity potentiator
162	 52.14	0	213613..214080	-	155	192362153	algQ	CJA_0162	-	transcriptional regulator AlgQ
163	 57.14	0	214176..214658	-	160	192359080	dsbH	CJA_0163	-	protein-disulfide reductase
164	 51.07	0	214932..215399	+	155	192360424	-	CJA_0165	-	Flagellar basal body-associated protein FliL
165	 55.56	0	215396..217006	-	536	192361486	gshA	CJA_0164	-	glutamate--cysteine ligase
166	 51.26	0	217091..217408	-	105	192362486	-	CJA_0166	-	hypothetical protein
167	 51.96	0	217441..218718	-	425	192361647	-	CJA_0167	-	transporter, small conductance mechanosensitive ion channel (MscS) family
168	 49.56	0	218879..219673	-	264	192361656	-	CJA_0168	-	Short-chain alcohol dehydrogenase family protein
169	 48.10	0	219686..220525	-	279	192360849	-	CJA_0169	-	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase
170	 49.49	0	220653..223214	-	853	192360542	urh105A	CJA_0170	-	unsaturated rhamnogalacturonyl hydrolase, putative, urh105A
171	 45.10	-1	223310..226021	-	903	192359268	-	CJA_0171	-	TonB-dependent receptor
172	 54.22	0	226264..227733	-	489	192362237	pga28A	CJA_0172	-	polygalacturonase, putative, pga28A
173	 37.78	-2	227896..228030	-	44	192361905	-	CJA_0173	-	hypothetical protein
174	 52.07	0	228491..230011	+	506	192359350	-	CJA_0174	-	dehydratase
175	 55.30	0	230198..231358	+	386	192362509	-	CJA_0175	-	proton-translocating nicotinamide nucleotide transhydrogenase subunit PntAA
176	 47.37	0	231373..231657	+	94	192361450	pntA	CJA_0176	-	NAD(P) transhydrogenase, alpha subunit
177	 52.85	0	231673..233076	+	467	192359751	-	CJA_0177	-	proton-translocating nicotinamide nucleotide transhydrogenase subunit PntB
178	 51.63	0	233154..233552	+	132	192359092	-	CJA_0178	-	glyoxylase family protein
179	 53.99	0	233604..234692	-	362	192360178	kdgK	CJA_0179	-	ketodeoxygluconokinase
180	 50.57	0	234806..236284	+	492	192360295	-	CJA_0180	-	D-mannonate oxidoreductase
181	 52.68	0	236371..237471	+	366	192360184	pme8C	CJA_0181	-	pectin methylesterase, putative, pme8C
182	 54.42	0	237624..239966	+	780	192359031	-	CJA_0182	-	putative methyl-accepting chemotaxis protein
183	 56.28	0	239974..240945	-	323	192361813	fbp	CJA_0183	-	fructose-1,6-bisphosphatase
184	 52.69	0	240961..242040	-	359	192359871	fbaA	CJA_0184	-	fructose-bisphosphate aldolase, class II
185	 58.24	+1	242146..242916	-	256	192358825	-	CJA_0185	-	triosephosphate isomerase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.