IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1246	 48.60	0	1488407..1488943	+	178	192361540	-	CJA_1279	-	flavodoxin
1247	 54.08	0	1489039..1489491	+	150	192361317	-	CJA_1280	-	hypothetical protein
1248	 49.79	0	1489622..1489858	+	78	192359389	-	CJA_1281	-	hypothetical protein
1249	 53.93	0	1489874..1490611	+	245	192362370	-	CJA_1282	-	hypothetical protein
1250	 51.21	0	1490781..1492313	+	510	192361552	-	CJA_1283	-	hypothetical protein
1251	 51.01	0	1492628..1493170	+	180	192360801	-	CJA_1284	-	Spore Coat Protein U domain protein
1252	 51.04	0	1493194..1493724	+	176	192358979	-	CJA_1285	-	putative type 1 pili pilus subunit
1253	 47.87	0	1493757..1494506	+	249	192361945	fimC	CJA_1286	-	type 1 pilus chaperone FimC
1254	 47.66	0	1494493..1496796	+	767	192361029	fimD	CJA_1287	-	type 1 pili usher protein FimD
1255	 50.05	0	1496810..1497790	+	326	192360265	-	CJA_1288	-	putative type 1 pili tip component
1256	 50.50	0	1497823..1498626	-	267	192362167	-	CJA_1289	-	polysaccharide deacetylase
1257	 54.55	0	1498855..1499184	+	109	192359085	-	CJA_1290	-	putative type 1 pili tip component
1258	 49.96	0	1499307..1500581	+	424	192361442	uvs045	CJA_1291	-	Uvs045
1259	 53.42	0	1500652..1505775	-	1707	192360769	-	CJA_1292	-	cartilage oligomeric matrix protein
1260	 47.92	0	1505803..1506837	-	344	192359273	ompA	CJA_1293	-	outer membrane protein A
1261	 48.96	0	1507334..1508440	-	368	192360523	-	CJA_1294	-	Regulatory P domain of the subtilisin-like proprotein
1262	 54.09	0	1509162..1509479	-	105	192360898	-	CJA_1295	-	hypothetical protein
1263	 57.01	0	1509476..1511101	-	541	192362174	-	CJA_1296	-	Uncharacterized iron-regulated membrane protein DUF337
1264	 55.45	0	1511098..1511418	-	106	192358831	-	CJA_1297	-	conserved membrane-spanning domain protein
1265	 51.87	0	1511595..1513844	-	749	192359883	-	CJA_1298	-	ferripyoverdine receptor
1266	 52.66	0	1514066..1514479	-	137	192360914	exbD	CJA_1299	-	ExbD
1267	 57.78	+1	1514483..1515202	-	239	192362375	exbB	CJA_1300	-	ExbB
1268	 59.56	+1	1515239..1515871	-	210	192359415	uvs044	CJA_1301	-	Uvs044
1269	 51.08	0	1516170..1517888	+	572	192360271	amy13J	CJA_1302	-	alpha amylase, putative, amy13J
1270	 48.29	0	1517961..1518602	-	213	192361954	-	CJA_1303	-	hypothetical protein
1271	 53.72	0	1518725..1519651	-	308	192359194	-	CJA_1304	-	hypothetical protein
1272	 44.44	-1	1519971..1520087	-	38	192359992	-	CJA_1305	-	hypothetical protein
1273	 56.53	0	1520096..1522444	-	782	192360853	-	CJA_1306	-	TonB-dependent receptor
1274	 54.92	0	1522636..1523988	-	450	192359185	chrA	CJA_1307	-	chromate transporter
1275	 52.39	0	1524127..1526262	-	711	192359966	-	CJA_1308	-	TonB-dependent receptor
1276	 48.15	0	1526455..1527291	-	278	192360513	-	CJA_1309	-	hypothetical protein
1277	 49.81	0	1527462..1528517	+	351	192359129	-	CJA_1310	-	hypothetical protein
1278	 51.11	0	1528594..1528908	+	104	192360726	-	CJA_1311	-	IS66 family element, Orf1 protein
1279	 45.30	-1	1528905..1529255	+	116	192360009	-	CJA_1312	-	IS66 family element, Orf2 protein
1280	 46.40	-1	1529294..1530877	+	527	192360541	-	CJA_1313	-	IS66 family element, transposase
1281	 57.16	0	1531126..1532997	-	623	192359604	-	CJA_1314	-	probable ATP-binding component of ABC transporter
1282	 52.23	0	1533077..1534669	+	530	192361528	-	CJA_1315	-	transport protein
1283	 51.03	0	1534705..1535721	+	338	192360510	gly43F	CJA_1316	-	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43F
1284	 57.69	+1	1535785..1537311	-	508	192359385	-	CJA_1317	-	putative lipoprotein
1285	 54.75	0	1537494..1538240	+	248	192362084	minC	CJA_1318	-	septum site-determining protein MinC
1286	 51.17	0	1538272..1539084	+	270	192360095	minD	CJA_1319	-	septum site-determining protein MinD
1287	 49.22	0	1539084..1539341	+	85	192360023	minE	CJA_1320	-	cell division topological specificity factor MinE
1288	 48.11	0	1539347..1540009	+	220	192360841	ycel4	CJA_1321	-	yceI-like protein, yceI4
1289	 54.47	0	1540028..1541569	+	513	192361739	-	CJA_1322	-	hypothetical protein
1290	 57.10	0	1541638..1544082	-	814	192359956	-	CJA_1323	-	radical SAM domain protein
1291	 54.90	0	1544182..1544640	-	152	192361146	-	CJA_1324	-	hypothetical protein
1292	 57.32	0	1544637..1544957	-	106	192359317	-	CJA_1325	-	phage shock protein
1293	 54.56	0	1545047..1545583	-	178	192360371	-	CJA_1326	-	hypothetical protein
1294	 54.32	0	1545868..1546110	-	80	192360322	-	CJA_1327	-	hypothetical protein
1295	 58.79	+1	1546113..1546442	-	109	192361396	-	CJA_1328	-	putative translation initation factor SUI1
1296	 58.86	+1	1546526..1547716	+	396	192361683	-	CJA_1329	-	beta-lactamase
1297	 54.34	0	1547716..1547934	+	72	192360094	-	CJA_1330	-	host factor for lysis of phiX174 infection-related protein
1298	 51.66	0	1548126..1550678	+	850	192359880	-	CJA_1331	-	sensory box/GGDEF domain/EAL domain protein
1299	 56.01	0	1550709..1552181	-	490	192359545	-	CJA_1332	-	Peptidase family M48 family
1300	 55.79	0	1552376..1552660	+	94	192362215	-	CJA_1333	-	Uncharacterized protein family UPF0033 family
1301	 52.35	0	1552757..1555738	+	993	192361196	-	CJA_1334	-	putative peptidase, insulinase family
1302	 38.33	-2	1555761..1555880	+	39	192360185	-	CJA_1335	-	hypothetical protein
1303	 53.32	0	1556163..1558814	+	883	192362251	aceE	CJA_1336	-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type
1304	 54.98	0	1558901..1560466	+	521	192361641	gt4H	CJA_1337	-	glycosyl transferase, putative, gt4H
1305	 53.81	0	1560523..1561113	-	196	192360763	-	CJA_1338	-	hypothetical protein
1306	 50.51	0	1561139..1561528	-	129	192360817	-	CJA_1339	-	hypothetical protein
1307	 55.56	0	1561597..1562280	-	227	192361532	mobA	CJA_1340	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1308	 55.04	0	1562546..1563190	+	214	192361882	pdxH	CJA_1341	-	pyridoxamine 5'-phosphate oxidase
1309	 56.54	0	1563200..1564177	+	325	192359405	-	CJA_1342	-	alcohol dehydrogenase, zinc-containing
1310	 56.33	0	1564174..1565373	+	399	192361044	-	CJA_1343	-	CAIB/BAIF family protein
1311	 52.75	0	1565370..1565642	+	90	192361967	-	CJA_1344	-	hypothetical protein
1312	 56.60	0	1565626..1566231	+	201	192359003	-	CJA_1345	-	Cytidine and deoxycytidylate deaminase zinc-binding region domain protein
1313	 49.57	0	1566539..1567948	-	469	192359804	-	CJA_1346	-	decarboxylase family protein
1314	 49.91	0	1568087..1569178	-	363	192359260	hyl84	CJA_1347	-	hyaluronidase, putative, hyl84A
1315	 52.97	0	1569625..1571289	+	554	192360593	pgi	CJA_1348	-	glucose-6-phosphate isomerase
1316	 56.74	0	1571421..1573364	+	647	192361243	edd	CJA_1349	-	phosphogluconate dehydratase
1317	 53.56	0	1573472..1574959	+	495	192362519	zwf	CJA_1350	-	glucose-6-phosphate 1-dehydrogenase
1318	 57.59	+1	1574953..1575657	+	234	192359347	pgl	CJA_1351	-	6-phosphogluconolactonase
1319	 58.14	+1	1575688..1576320	+	210	192360358	kdgA	CJA_1352	-	KHG/KDPG aldolase
1320	 51.59	0	1576406..1577413	+	335	192360926	gap	CJA_1353	-	glyceraldehyde-3-phosphate dehydrogenase, type I
1321	 55.81	0	1577431..1578876	+	481	192362030	pyk	CJA_1354	-	pyruvate kinase
1322	 48.81	0	1578860..1579027	+	55	192360818	-	CJA_1355	-	hypothetical protein
1323	 55.79	0	1579040..1579885	+	281	192362027	-	CJA_1356	-	peptidase, M23/M37 family
1324	 52.17	0	1579914..1581734	+	606	192360643	-	CJA_1357	-	MORN repeat family protein
1325	 49.05	0	1581810..1582019	+	69	192359723	-	CJA_1358	-	Tetraacyldisaccharide-1-P 4-kinase
1326	 54.11	0	1582106..1584733	+	875	192362500	alaS	CJA_1359	-	alanyl-tRNA synthetase
1327	 50.96	0	1584887..1586134	+	415	192361488	lysC	CJA_1360	-	aspartate kinase, monofunctional class
1328	 43.23	-1	1586352..1586543	+	63	192360389	csrA	CJA_1361	-	carbon storage regulator
1329	 51.03	0	1587069..1589933	-	954	192359270	valS	CJA_1363	-	valyl-tRNA synthetase
1330	 43.26	-1	1590106..1591122	+	338	192360245	lcbA	CJA_1364	-	capsular polysaccharide synthesis
1331	 49.64	0	1591126..1593228	-	700	192362062	-	CJA_1365	-	hypothetical protein
1332	 51.55	0	1593327..1594523	-	398	192360977	gt4F	CJA_1366	-	glycosyl transferase, putative, gt4F
1333	 49.39	0	1594550..1595446	-	298	192359924	gt2F	CJA_1367	-	glycosyl transferase, putative, gt2F
1334	 48.03	0	1595412..1597289	-	625	192361822	-	CJA_1368	-	hypothetical protein
1335	 50.72	0	1597311..1598414	-	367	192360931	gt9B	CJA_1369	-	lipopolysaccharide heptosyltransferase, putative, gt9B
1336	 47.22	0	1598383..1598778	-	131	192360089	-	CJA_1370	-	hypothetical protein
1337	 54.24	0	1598945..1599652	-	235	192358915	-	CJA_1371	-	metallo-beta-lactamase family protein
1338	 53.11	0	1599735..1600553	-	272	192359724	-	CJA_1372	-	hypothetical protein
1339	 52.54	0	1600572..1601102	-	176	192358909	-	CJA_1373	-	sulfurtransferase
1340	 48.72	0	1601122..1601589	-	155	192361394	-	CJA_1374	-	transcriptional activator
1341	 50.88	0	1601677..1601790	+	37	192360551	-	CJA_1375	-	cyd operon protein YbgT
1342	 53.63	0	1601887..1603044	+	385	192359329	-	CJA_1376	-	hypothetical protein
1343	 53.77	0	1603136..1603546	+	136	192362249	-	CJA_1377	-	Lactoylglutathione lyase
1344	 48.67	0	1603593..1603931	+	112	192360750	-	CJA_1378	-	antibiotic biosynthesis monooxygenase family protein
1345	 57.49	0	1604031..1605545	+	504	192360175	gltX	CJA_1379	-	glutamyl-tRNA synthetase
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.