IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1080	 53.75	0	1303109..1304029	+	306	192360798	-	CJA_1108	-	gufA protein
1081	 60.34	+1	1304097..1305314	-	405	192362286	uxuA	CJA_1109	-	mannonate dehydratase
1082	 52.09	0	1305699..1306439	+	246	192361500	rpsB	CJA_1110	-	ribosomal protein S2
1083	 53.38	0	1306564..1307436	+	290	192361153	tsf	CJA_1111	-	translation elongation factor Ts
1084	 55.58	0	1307571..1309094	+	507	192362481	-	CJA_1112	-	hypothetical protein
1085	 56.48	0	1309151..1309690	+	179	192359646	-	CJA_1113	-	hypothetical protein
1086	 53.74	0	1309813..1310547	+	244	192360684	pyrH	CJA_1114	-	uridylate kinase
1087	 53.64	0	1310652..1311104	+	150	192360685	frr	CJA_1115	-	ribosome recycling factor
1088	 55.60	0	1311223..1311972	+	249	192361948	uppS	CJA_1116	-	undecaprenyl diphosphate synthase
1089	 56.31	0	1311965..1312804	+	279	192359237	cdsA	CJA_1117	-	phosphatidate cytidylyltransferase
1090	 56.64	0	1312813..1314009	+	398	192360022	dxr	CJA_1118	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1091	 52.77	0	1314036..1315409	+	457	192359199	-	CJA_1119	-	putative membrane-associated zinc metalloprotease
1092	 48.77	0	1315480..1318122	+	880	192359801	-	CJA_1120	-	outer membrane protein, bacterial surface antigen family
1093	 48.62	0	1318239..1318709	+	156	192359665	-	CJA_1121	-	putative outer membrane protein OmpH
1094	 54.09	0	1318728..1319753	+	341	192360259	lpxD	CJA_1122	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1095	 46.80	0	1319788..1320225	+	145	192359935	fabZ	CJA_1123	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1096	 49.16	0	1320300..1321070	+	256	192362392	lpxA	CJA_1124	-	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase
1097	 50.91	0	1321138..1322292	+	384	192362074	lpx19A	CJA_1125	-	lipid-A-disaccharide synthase, putative, lpx19A
1098	 52.36	0	1322289..1322903	+	204	192358895	rnhB	CJA_1126	-	ribonuclease HII
1099	 53.03	0	1322930..1326463	+	1177	192360327	dnaE	CJA_1127	-	DNA polymerase III, alpha subunit
1100	 45.61	-1	1326631..1327086	+	151	192360989	-	CJA_1128	-	CBS domain protein
1101	 54.01	0	1327453..1328400	+	315	192361884	accA	CJA_1129	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
1102	 33.33	-2	1328634..1328726	+	30	192358980	-	CJA_1130	-	hypothetical protein
1103	 57.88	+1	1328865..1330025	-	386	192359218	lldD	CJA_1131	-	L-lactate dehydrogenase
1104	 56.06	0	1330234..1331544	+	436	192361229	fucP	CJA_1132	-	L-fucose permease
1105	 60.30	+1	1331541..1332419	+	292	192362289	-	CJA_1133	-	Amidohydrolase family superfamily
1106	 56.24	0	1332517..1333341	+	274	192359551	kdgR	CJA_1134	-	transcriptional regulator kdgR
1107	 59.75	+1	1333537..1334649	+	370	192359521	-	CJA_1135	-	D-threo-aldose 1-dehydrogenase-like protein
1108	 53.74	0	1334646..1334993	+	115	192360589	-	CJA_1136	-	hydrolase, UxaA family
1109	 55.01	0	1334990..1336207	+	405	192360842	uxaA	CJA_1137	-	hydrolase, UxaA family
1110	 52.40	0	1336281..1337009	+	242	192361927	-	CJA_1138	-	oxidoreductase UCPA
1111	 52.72	0	1337034..1337879	+	281	192362262	-	CJA_1139	-	putative fumarylacetoacetate hydrolase family protein
1112	 51.87	0	1337925..1341134	+	1069	192359054	cel3D	CJA_1140	-	putative 1,4-beta-D-glucan glucohydrolase cel3D
1113	 47.15	0	1341418..1341909	+	163	192359038	-	CJA_1141	-	hypothetical protein
1114	 49.62	0	1342050..1343780	+	576	192360106	-	CJA_1142	-	OmpA family protein
1115	 45.97	-1	1343825..1344196	-	123	192361218	-	CJA_1143	-	hypothetical protein
1116	 57.08	0	1344236..1345309	-	357	192362503	purK	CJA_1144	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1117	 56.91	0	1345336..1345827	-	163	192360478	purE	CJA_1145	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1118	 54.85	0	1346009..1346947	-	312	192359827	-	CJA_1146	-	sodium bicarbonate cotransporter
1119	 53.47	0	1347009..1348016	+	335	192360757	rbcR	CJA_1147	-	rubisco operon transcriptional regulator
1120	 53.59	0	1348030..1349100	-	356	192362094	-	CJA_1148	-	apbE family protein
1121	 57.00	0	1349232..1350959	+	575	192362147	sul1	CJA_1149	-	sulfate permease family protein
1122	 52.58	0	1350962..1351912	-	316	192362021	rdgC	CJA_1150	-	recombinaison associated protein
1123	 55.88	0	1352051..1352671	-	206	192361350	fklB	CJA_1151	-	peptidylprolyl cis-trans isomerase
1124	 53.44	0	1352732..1353895	-	387	192360560	-	CJA_1152	-	hypothetical protein
1125	 52.57	0	1353973..1354944	+	323	192358792	-	CJA_1153	-	hypothetical protein
1126	 56.06	0	1355128..1356984	-	618	192362445	feoB	CJA_1154	-	ferrous iron transport protein B
1127	 55.02	0	1357033..1357341	-	102	192360969	-	CJA_1155	-	ferrous iron transport protein
1128	 50.06	0	1357591..1358439	+	282	192359917	-	CJA_1156	-	hypothetical protein
1129	 48.48	0	1358777..1361404	+	875	192360309	-	CJA_1157	-	TonB-dependent receptor
1130	 47.19	0	1361484..1363013	+	509	192359265	-	CJA_1159	-	tryptophan halogenase
1131	 46.22	-1	1363010..1363630	-	206	192361311	-	CJA_1158	-	hypothetical protein
1132	 54.65	0	1364143..1365066	+	307	192362337	-	CJA_1160	-	BadF/BadG/BcrA/BcrD ATPase family superfamily
1133	 50.75	0	1365168..1366499	+	443	192358969	gluP	CJA_1161	-	glucose/galactose transporter
1134	 50.33	0	1366462..1367661	+	399	192359631	-	CJA_1162	-	hypothetical protein
1135	 53.84	0	1367692..1368837	+	381	192360623	nag9A	CJA_1163	-	N-acetylhexosamine 6-phosphate deacetylase, putative, nag9A
1136	 49.24	0	1368872..1369663	+	263	192359522	nagB	CJA_1164	-	glucosamine-6-phosphate isomerase
1137	 55.25	0	1369848..1370933	-	361	192361788	-	CJA_1165	-	transcriptional regulator, LacI family
1138	 48.05	0	1371204..1372073	+	289	192359093	-	CJA_1166	-	periplasmic ATP/GTP-binding protein
1139	 50.00	0	1372145..1372462	-	105	192360160	-	CJA_1167	-	hypothetical protein
1140	 52.54	0	1372480..1373739	-	419	192361219	-	CJA_1168	-	RDD family domain protein
1141	 54.47	0	1373740..1375428	-	562	192359969	hscC	CJA_1169	-	chaperone protein hscC
1142	 51.75	0	1375728..1376585	+	285	192360488	motA1	CJA_1170	-	chemotaxis motA protein
1143	 53.09	0	1376599..1377600	+	333	192359644	motB	CJA_1171	-	chemotaxis protein MotB
1144	 48.43	0	1377735..1378277	+	180	192362012	-	CJA_1172	-	hypothetical protein
1145	 53.86	0	1378356..1380089	-	577	192360949	-	CJA_1173	-	transporter, monovalent cation:proton antiporter-2 (CPA2) family
1146	 53.73	0	1380317..1382341	-	674	192359934	-	CJA_1174	-	von Willebrand factor type A domain protein
1147	 56.23	0	1382338..1382883	-	181	192358878	-	CJA_1175	-	RNA polymerase sigma-24 factor
1148	 57.57	+1	1382964..1384919	-	651	192359271	-	CJA_1176	-	transglutaminase-like domain protein
1149	 57.60	+1	1384916..1385908	-	330	192362470	-	CJA_1177	-	hypothetical protein
1150	 58.80	+1	1385913..1386827	-	304	192361016	-	CJA_1178	-	MoxR protein
1151	 57.62	+1	1386879..1388138	-	419	192359785	-	CJA_1179	-	putative Capsule biosynthesis protein capA
1152	 54.81	0	1388262..1389239	-	325	192362321	-	CJA_1180	-	GGDEF domain protein
1153	 57.21	0	1389656..1390459	+	267	192359527	-	CJA_1183	-	Mg-dependent DNase
1154	 51.50	0	1390456..1391754	-	432	192359300	chi18A	CJA_1182	-	endo-chitinase, putative, chi18A
1155	 50.36	0	1391932..1392342	+	136	192359045	-	CJA_1184	-	hypothetical protein
1156	 57.91	+1	1392387..1393220	-	277	192362282	-	CJA_1185	-	ThiF family protein
1157	 54.76	0	1393421..1394050	+	209	192361195	-	CJA_1186	-	Response regulator receiver domain protein
1158	 52.68	0	1394352..1396067	+	571	192361773	-	CJA_1187	-	methyl-accepting chemotaxis protein
1159	 52.43	0	1396111..1396974	+	287	192359083	-	CJA_1188	-	chemotaxis protein methyltransferase CheR
1160	 51.61	0	1396988..1398289	+	433	192361518	-	CJA_1189	-	response regulator
1161	 53.26	0	1398244..1401429	+	1061	192359662	-	CJA_1190	-	Response regulator receiver domain protein
1162	 50.44	0	1401461..1403044	-	527	192359658	cbp6A	CJA_1191	-	carbohydrate binding protein, putative, cbp6A
1163	 57.12	0	1403370..1404773	-	467	192362159	-	CJA_1192	-	transcriptional regulator, GntR family/aminotransferase class-I
1164	 57.79	+1	1405039..1405635	+	198	192361343	-	CJA_1193	-	transporter, LysE family
1165	 52.11	0	1405703..1406554	-	283	192359099	-	CJA_1194	-	DGPF domain family
1166	 47.96	0	1406766..1407647	+	293	192359022	-	CJA_1195	-	hypothetical protein
1167	 45.68	-1	1407651..1408598	+	315	192359372	-	CJA_1196	-	EF hand domain protein
1168	 47.46	0	1408772..1411150	+	792	192362136	hupA	CJA_1197	-	hypothetical heme receptor
1169	 42.67	-1	1411332..1411781	-	149	192361460	azu	CJA_1198	-	azurin
1170	 47.55	0	1412145..1413143	-	332	192359491	-	CJA_1199	-	2-nitropropane dioxygenase
1171	 41.59	-1	1413153..1413479	-	108	192360751	-	CJA_1200	-	hypothetical protein
1172	 48.45	0	1413661..1414500	+	279	192360481	-	CJA_1201	-	transcriptional regulator, LysR family
1173	 50.85	0	1414689..1415042	+	117	192359947	-	CJA_1202	-	hypothetical protein
1174	 42.35	-1	1415191..1416354	+	387	192362182	-	CJA_1203	-	GGDEF domain protein
1175	 44.44	-1	1416656..1416763	+	35	192361354	-	CJA_1204	-	hypothetical protein
1176	 61.62	+1	1416772..1417227	+	151	192361375	-	CJA_1205	-	hypothetical protein
1177	 55.83	0	1417329..1418537	+	402	192360069	-	CJA_1206	-	hypothetical protein
1178	 40.93	-2	1418589..1419431	-	280	192359247	-	CJA_1207	-	Domain of unknown function (DUF955) family
1179	 41.36	-1	1419413..1419736	-	107	192361723	sinR	CJA_1208	-	Helix-turn-helix motif
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.