IslandPathversion 1.0

IslandPath Analysis: Cellvibrio japonicus Ueda107



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.09 STD DEV: 5.42
Cellvibrio japonicus Ueda107, complete genome - 1..4576573
3754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
54	 49.72	0	97165..97890	-	241	192358873	uvs118	CJA_0054	-	Uvs118
55	 53.95	0	97906..98589	-	227	192360186	uvs117	CJA_0055	-	Uvs117
56	 53.15	0	98641..100719	-	692	192359481	glyS	CJA_0056	-	glycyl-tRNA synthetase, beta subunit
57	 56.48	0	100719..101690	-	323	192358918	glyQ	CJA_0057	-	glycyl-tRNA synthetase, alpha subunit
58	 50.62	0	101967..102533	+	188	192361328	uvs112	CJA_0058	-	Uvs112
59	 54.81	0	102734..103408	-	224	192358795	-	CJA_0059	-	hypothetical protein
60	 59.52	+1	103538..104446	+	302	192361883	uvs111	CJA_0060	-	Uvs111
61	 54.81	0	104630..105430	+	266	192358937	uvs110	CJA_0061	-	Uvs110
62	 57.00	0	105463..107013	+	516	192359668	-	CJA_0062	-	Gonadoliberin III-related protein
63	 56.41	0	107010..108023	+	337	192360586	-	CJA_0063	-	alpha-L-glutamate ligase homolog
64	 48.23	0	108133..108696	+	187	192361357	-	CJA_0064	-	putative OmpA-like transmembrane domain
65	 48.55	0	108696..108971	+	91	192362168	-	CJA_0065	-	hypothetical protein
66	 57.76	+1	109049..110407	+	452	192359211	gt4G	CJA_0066	-	glycosyl transferase, putative, gt4G
67	 51.60	0	110394..111143	+	249	192359996	-	CJA_0067	-	Cyclopropane-fatty-acyl-phospholipid synthase
68	 51.91	0	111140..112210	+	356	192359145	-	CJA_0068	-	hypothetical protein
69	 52.20	0	112213..112938	+	241	192360419	-	CJA_0070	-	conserved hypothetical protein TIGR00046
70	 56.70	0	112935..113285	-	116	192359713	-	CJA_0069	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
71	 55.93	0	113367..113981	-	204	192361702	-	CJA_0071	-	putative lipoprotein
72	 58.33	+1	114019..114498	-	159	192360872	-	CJA_0072	-	hypothetical protein
73	 61.78	+1	114520..115419	-	299	192360132	cheB	CJA_0073	-	protein-glutamate methylesterase CheB
74	 59.11	+1	115439..122449	-	2336	192362211	pilL	CJA_0074	-	type IV pili sensor histidine kinase/response regulator PilL
75	 53.79	0	122459..123382	-	307	192361287	pilK	CJA_0075	-	type IV pili chemotactic methyltransferase PilK
76	 57.76	+1	123436..125601	-	721	192362120	pilJ	CJA_0076	-	twitching motility protein PilJ
77	 58.85	+1	125707..126282	-	191	192361294	pilI	CJA_0077	-	Protein pilI
78	 53.99	0	126372..126734	-	120	192360647	pilH	CJA_0078	-	twitching motility protein PilH
79	 51.45	0	126719..126856	-	45	192361353	-	CJA_0079	-	hypothetical protein
80	 49.49	0	126864..127259	-	131	192359101	pilG	CJA_0080	-	twitching motility protein PilG - Pseudomonas aeruginosa
81	 58.07	+1	127605..128558	+	317	192361999	gshB	CJA_0081	-	glutathione synthase
82	 55.11	0	128581..129480	+	299	192360689	-	CJA_0082	-	TonB family C-terminal domain protein
83	 53.33	0	129498..130142	+	214	192359838	-	CJA_0083	-	Uncharacterized ACR
84	 56.48	0	130146..130577	+	143	192359483	-	CJA_0084	-	conserved hypothetical protein TIGR00250
85	 49.54	0	130589..130915	-	108	192362465	-	CJA_0085	-	Domain of unknown function (DUF1508) family
86	 54.97	0	130948..132093	-	381	192361321	pilU	CJA_0086	-	twitching motility protein PilU
87	 56.71	0	132115..133149	-	344	192362112	pilT	CJA_0087	-	twitching motility protein
88	 58.74	+1	133093..133899	+	268	192361248	-	CJA_0088	-	conserved hypothetical protein TIGR00044
89	 59.61	+1	133949..134770	+	273	192360538	proC	CJA_0089	-	pyrroline-5-carboxylate reductase
90	 55.15	0	134794..135375	+	193	192359255	-	CJA_0090	-	YGGT family protein
91	 55.23	0	135376..135681	+	101	192362044	-	CJA_0091	-	conserved hypothetical protein TIGR00251
92	 58.26	+1	135849..137870	+	673	192360981	-	CJA_0092	-	hypothetical protein
93	 55.56	0	137928..138107	-	59	192359895	-	CJA_0093	-	Tetraacyldisaccharide-1-P 4-kinase
94	 49.66	0	138199..138639	-	146	192358892	-	CJA_0094	-	Excinuclease ATPase subunit
95	 54.85	0	138686..139108	-	140	192359787	-	CJA_0095	-	hypothetical protein
96	 60.81	+1	139105..139923	-	272	192358985	-	CJA_0096	-	hypothetical protein
97	 60.68	+1	139923..141107	-	394	192359537	-	CJA_0097	-	Beta-ketoacyl synthase
98	 55.81	0	141070..141999	-	309	192362460	-	CJA_0098	-	acyltransferase
99	 61.46	+1	142293..143675	-	460	192359138	pigH	CJA_0099	-	AMP-ligase
100	 53.69	0	143687..144295	-	202	192359276	-	CJA_0100	-	ketosynthase
101	 51.61	0	144288..144566	-	92	192360338	acpC	CJA_0101	-	acyl carrier protein
102	 57.48	0	144645..145406	-	253	192361475	-	CJA_0102	-	ubiquinone/menaquinone biosynthesis methlytransferase UbiE
103	 46.51	-1	145488..145616	+	42	192362204	-	CJA_0103	-	hypothetical protein
104	 58.66	+1	145623..146621	+	332	192358813	fkbO	CJA_0104	-	FkbO protein
105	 59.45	+1	146603..147406	+	267	192360506	-	CJA_0105	-	acyltransferase family protein
106	 56.72	0	147441..147983	-	180	192358970	-	CJA_0106	-	hypothetical protein
107	 55.75	0	148048..148890	+	280	192359784	-	CJA_0107	-	hypothetical protein
108	 46.24	-1	148992..149363	+	123	192359515	-	CJA_0108	-	acyl carrier protein
109	 58.40	+1	149390..149788	+	132	192362466	-	CJA_0109	-	AMP-binding enzyme family protein
110	 58.03	+1	149799..150551	+	250	192359725	gt2J	CJA_0110	-	glycosyl transferase, putative, gt2J
111	 53.66	0	150572..150994	+	140	192358942	-	CJA_0111	-	4-hydroxybenzoyl-CoA thioesterase domain protein
112	 54.22	0	150996..151694	+	232	192359379	-	CJA_0112	-	hypothetical protein
113	 55.88	0	151711..154167	+	818	192360964	-	CJA_0113	-	hypothetical protein
114	 56.90	0	154160..154753	+	197	192362365	-	CJA_0114	-	hypothetical protein
115	 56.03	0	154761..155249	+	162	192361585	-	CJA_0115	-	hypothetical protein
116	 55.01	0	155252..155980	+	242	192359753	-	CJA_0116	-	putative 3-oxoacyl-(acyl-carrier-protein) reductase
117	 54.83	0	155980..157212	+	410	192358956	fabF-2	CJA_0117	-	3-oxoacyl-(acyl-carrier-protein) synthase II
118	 48.92	0	157248..157991	+	247	192361252	-	CJA_0118	-	hypothetical protein
119	 57.31	0	158133..159275	+	380	192362095	metX	CJA_0119	-	homoserine O-acetyltransferase
120	 47.45	0	159280..159867	+	195	192359074	metW	CJA_0120	-	methionine biosynthesis protein MetW
121	 47.81	0	159881..160336	+	151	192359808	-	CJA_0121	-	hypothetical protein
122	 56.55	0	160339..160941	+	200	192361716	rdgB	CJA_0122	-	non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family
123	 52.12	0	160941..162122	+	393	192362341	-	CJA_0123	-	putative oxygen-independent coproporphyrinogen III oxidase
124	 43.97	-1	162194..164035	+	613	192359378	-	CJA_0124	-	hypothetical protein
125	 52.22	0	164022..165848	+	608	192360216	recQ	CJA_0125	-	ATP-dependent DNA helicase RecQ
126	 51.36	0	166129..166605	+	158	192362175	-	CJA_0126	-	hypothetical protein
127	 53.38	0	166720..177969	+	3749	192359225	-	CJA_0127	-	RHS Repeat family
128	 44.16	-1	178821..179771	-	316	192360063	-	CJA_0128	-	Integrase core domain protein
129	 55.51	0	179794..181146	+	450	192360884	-	CJA_0129	-	cytoplasmic membrane protein
130	 51.11	0	181215..181529	+	104	192360806	-	CJA_0130	-	IS66 family element, Orf1 protein
131	 46.44	-1	181526..181876	+	116	192361639	-	CJA_0131	-	IS66 family element, Orf2 protein
132	 46.40	-1	181909..183477	+	522	192360629	-	CJA_0132	-	IS66 family element, transposase
133	 52.24	0	183532..184044	+	170	192361470	-	CJA_0133	-	Rhs family protein
134	 48.24	0	184053..184817	+	254	192359384	-	CJA_0134	-	Rhs family protein
135	 37.82	-2	185163..185630	-	155	192359990	-	CJA_0135	-	hypothetical protein
136	 51.12	0	186606..188567	-	653	192360782	-	CJA_0136	-	phospholipase/carboxylesterase
137	 56.46	0	188809..189141	+	110	192361795	-	CJA_0137	-	Peptidase propeptide and YPEB domain protein
138	 59.12	+1	189162..189479	+	105	192359442	-	CJA_0138	-	Peptidase propeptide and YPEB domain protein
139	 58.56	+1	189479..190144	+	221	192361100	-	CJA_0139	-	DNA-binding response regulator
140	 63.98	+2	190141..191481	+	446	192359809	-	CJA_0140	-	sensor histidine kinase
141	 55.06	0	191519..193327	+	602	192358964	-	CJA_0141	-	ABC transporter, ATP-binding protein
142	 50.72	0	193338..194165	-	275	192362420	-	CJA_0142	-	metallo-beta-lactamase superfamily domain protein
143	 54.47	0	194224..195420	-	398	192361590	-	CJA_0143	-	drug resistance transporter, Bcr/CflA subfamily
144	 55.30	0	195719..196510	+	263	192360296	-	CJA_0144	-	probable partition-related protein
145	 43.48	-1	196552..196758	-	68	192359462	-	CJA_0145	-	hypothetical protein
146	 46.78	0	196789..197502	-	237	192360226	-	CJA_0146	-	hypothetical protein
147	 46.34	-1	197722..198336	-	204	192359307	-	CJA_0147	-	hypothetical protein
148	 44.28	-1	199015..201783	-	922	192359267	-	CJA_0148	-	hypothetical protein
149	 51.83	0	202110..203390	-	426	192360387	-	CJA_0149	-	phosphate regulon sensor protein PhoR
150	 55.65	0	203427..204125	-	232	192361393	phoB	CJA_0150	-	phosphate regulon transcriptional regulatory protein PhoB
151	 58.06	+1	204211..205140	-	309	192362449	ubiA	CJA_0151	-	4-hydroxybenzoate polyprenyl transferase
152	 62.75	+1	205161..205772	-	203	192358861	ubiC	CJA_0152	-	chorismate--pyruvate lyase
153	 54.35	0	205964..206239	+	91	192359929	hup	CJA_0153	-	DNA-binding protein HU
52.09	MEAN

5.42	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.