IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
926	 69.86	0	983065..984504	-	479	167644899	-	Caul_0933	-	DEAD/DEAH box helicase domain-containing protein
927	 68.12	0	984883..985227	-	114	167644900	-	Caul_0934	-	PRC-barrel domain-containing protein
928	 69.16	0	985407..986690	+	427	167644901	-	Caul_0935	-	major facilitator transporter
929	 70.26	0	986693..988333	+	546	167644902	-	Caul_0936	-	Alpha-N-arabinofuranosidase
930	 66.91	0	988410..988814	+	134	167644903	-	Caul_0937	-	mutator MutT protein
931	 72.57	+1	989172..990086	-	304	167644904	-	Caul_0938	-	methyltransferase type 11
932	 73.61	+1	990229..990876	+	215	167644905	-	Caul_0939	-	phosphoribosyltransferase
933	 67.84	0	990908..991162	+	84	167644906	-	Caul_0940	-	glutaredoxin 3
934	 71.80	+1	991159..991995	+	278	167644907	-	Caul_0941	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
935	 68.97	0	992011..992445	+	144	167644908	-	Caul_0942	-	hypothetical protein
936	 66.98	0	992541..992855	-	104	167644909	-	Caul_0943	-	17 kDa surface antigen
937	 68.11	0	992987..994027	-	346	167644910	-	Caul_0944	-	17 kDa surface antigen
938	 63.61	-1	994139..994531	-	130	167644911	-	Caul_0945	-	PilT domain-containing protein
939	 66.13	0	994528..994902	-	124	167644912	-	Caul_0946	-	hypothetical protein
940	 70.09	0	994913..995671	-	252	167644913	-	Caul_0947	-	3-demethylubiquinone-9 3-methyltransferase
941	 65.90	0	996050..996571	-	173	167644914	-	Caul_0949	-	hypothetical protein
942	 67.63	0	996777..998024	+	415	167644915	-	Caul_0950	-	aspartate kinase
943	 67.10	0	998615..999076	+	153	167644916	-	Caul_0951	-	hypothetical protein
944	 70.52	0	999125..1000111	+	328	167644917	-	Caul_0952	-	hypothetical protein
945	 69.12	0	1000358..1000846	+	162	167644918	-	Caul_0953	-	hypothetical protein
946	 70.30	0	1001111..1003312	+	733	167644919	-	Caul_0954	-	phosphoenolpyruvate-protein phosphotransferase PtsP
947	 74.49	+1	1003472..1004545	+	357	167644920	-	Caul_0955	-	hypothetical protein
948	 75.78	+2	1004851..1005651	-	266	167644921	-	Caul_0956	-	hypothetical protein
949	 68.42	0	1005773..1006912	+	379	167644922	-	Caul_0957	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
950	 65.38	0	1007068..1008780	-	570	167644923	-	Caul_0958	-	SSS family solute/sodium (Na+) symporter
951	 65.43	0	1008777..1009100	-	107	167644924	-	Caul_0959	-	hypothetical protein
952	 66.94	0	1009375..1010475	+	366	167644925	-	Caul_0960	-	alpha/beta hydrolase domain-containing protein
953	 68.79	0	1010497..1011816	+	439	167644926	-	Caul_0961	-	GDSL family lipase
954	 67.87	0	1011964..1013211	+	415	167644927	-	Caul_0962	-	major facilitator transporter
955	 70.18	0	1013238..1014290	-	350	167644928	-	Caul_0963	-	alpha/beta hydrolase domain-containing protein
956	 68.31	0	1014911..1016068	+	385	167644929	-	Caul_0964	-	levansucrase
957	 70.42	0	1016071..1016976	+	301	167644930	-	Caul_0965	-	ROK family protein
958	 65.85	0	1017032..1018381	+	449	167644931	-	Caul_0966	-	hypothetical protein
959	 66.95	0	1018474..1019532	+	352	167644932	-	Caul_0967	-	LacI family transcription regulator
960	 63.80	-1	1019990..1022119	+	709	167644933	-	Caul_0968	-	TonB-dependent receptor
961	 69.12	0	1022337..1024331	-	664	167644934	-	Caul_0969	-	metallophosphoesterase
962	 66.70	0	1024674..1027649	+	991	167644935	-	Caul_0970	-	TonB-dependent receptor
963	 66.80	0	1027783..1028538	+	251	167644936	-	Caul_0971	-	DeoR family transcriptional regulator
964	 69.52	0	1028588..1029919	-	443	167644937	-	Caul_0972	-	hypothetical protein
965	 67.50	0	1030039..1030638	+	199	167644938	-	Caul_0973	-	TetR family transcriptional regulator
966	 71.83	+1	1030677..1031063	-	128	167644939	-	Caul_0974	-	OsmC family protein
967	 76.14	+2	1031152..1032534	-	460	167644940	-	Caul_0975	-	transcriptional regulator
968	 71.53	0	1032633..1033310	+	225	167644941	-	Caul_0976	-	lysine exporter protein LysE/YggA
969	 66.89	0	1033626..1034504	+	292	167644942	-	Caul_0977	-	PE-PGRS family protein
970	 71.04	0	1034699..1035178	+	159	167644943	-	Caul_0978	-	hypothetical protein
971	 69.20	0	1035300..1035812	-	170	167644944	-	Caul_0979	-	hypothetical protein
972	 69.45	0	1036049..1037053	+	334	167644945	-	Caul_0980	-	peptide chain release factor 1
973	 65.84	0	1037379..1038950	+	523	167644946	-	Caul_0981	-	hypothetical protein
974	 70.81	0	1039063..1039593	-	176	167644947	-	Caul_0982	-	GCN5-related N-acetyltransferase
975	 69.88	0	1039669..1040913	-	414	167644948	-	Caul_0983	-	ribonuclease BN
976	 71.78	+1	1041024..1041785	+	253	167644949	-	Caul_0984	-	MOSC domain-containing protein
977	 59.93	-2	1041782..1042078	-	98	167644950	-	Caul_0985	-	plasmid stabilization system protein
978	 58.33	-2	1042075..1042326	-	83	167644951	-	Caul_0986	-	CopG/Arc/MetJ family addiction module antidote protein
979	 68.88	0	1042410..1043267	+	285	167644952	-	Caul_0987	-	protein-(glutamine-N5) methyltransferase, release factor-specific
980	 70.32	0	1043549..1044670	+	373	167644953	-	Caul_0988	-	hypothetical protein
981	 68.20	0	1044832..1046262	+	476	167644954	-	Caul_0989	-	hypothetical protein
982	 71.51	0	1046425..1047168	+	247	167644955	-	Caul_0990	-	peptidase M48 Ste24p
983	 68.98	0	1047263..1049857	+	864	167644956	-	Caul_0991	-	ATP-dependent chaperone ClpB
984	 64.75	0	1050185..1050757	+	190	167644957	-	Caul_0992	-	OmpA/MotB domain-containing protein
985	 69.23	0	1050837..1051577	-	246	167644958	-	Caul_0993	-	short-chain dehydrogenase/reductase SDR
986	 71.79	+1	1051716..1052594	+	292	167644959	-	Caul_0994	-	LysR family transcriptional regulator
987	 69.16	0	1052639..1053280	-	213	167644960	-	Caul_0995	-	glutathione S-transferase domain-containing protein
988	 69.67	0	1053521..1056019	-	832	167644961	-	Caul_0996	-	multi-sensor hybrid histidine kinase
989	 70.60	0	1056150..1057064	-	304	167644962	-	Caul_0997	-	Beta-lactamase
990	 73.31	+1	1057160..1058032	+	290	167644963	-	Caul_0998	-	LysR family transcriptional regulator
991	 71.11	0	1058071..1058340	-	89	167644964	-	Caul_0999	-	hypothetical protein
992	 70.46	0	1058422..1059027	+	201	167644965	-	Caul_1000	-	hypothetical protein
993	 71.90	+1	1059172..1060374	-	400	167644966	-	Caul_1001	-	acetyl-CoA acetyltransferase
994	 69.64	0	1060680..1061183	+	167	167644967	-	Caul_1002	-	HxlR family transcriptional regulator
995	 69.35	0	1061373..1061930	+	185	167644968	-	Caul_1003	-	sugar transferase
996	 61.48	-1	1061927..1062061	-	44	167644969	-	Caul_1004	-	hypothetical protein
997	 72.36	+1	1062386..1063615	-	409	167644970	-	Caul_1005	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
998	 65.69	0	1063670..1064593	-	307	167644971	-	Caul_1006	-	flagellin, putative
999	 68.04	0	1064603..1066717	-	704	167644972	-	Caul_1007	-	flagellar hook-associated protein FlgK
1000	 75.85	+2	1067119..1068795	+	558	167644973	-	Caul_1008	-	flagellar hook-length control protein
1001	 63.95	0	1068807..1069505	+	232	167644974	-	Caul_1009	-	flagellar hook capping protein
1002	 65.47	0	1069627..1071297	+	556	167644975	-	Caul_1010	-	hypothetical protein
1003	 64.18	0	1071467..1071748	+	93	167644976	-	Caul_1011	-	hypothetical protein
1004	 67.64	0	1071994..1073637	+	547	167644977	-	Caul_1012	-	flagellar MS-ring protein
1005	 64.90	0	1073637..1074656	+	339	167644978	-	Caul_1013	-	flagellar motor switch protein G
1006	 72.22	+1	1074669..1075316	+	215	167644979	-	Caul_1014	-	flagellar assembly protein H
1007	 66.07	0	1075322..1075657	+	111	167644980	-	Caul_1015	-	flagellar motor switch protein
1008	 69.59	0	1075801..1077168	+	455	167644981	-	Caul_1016	-	two component, sigma54 specific, Fis family transcriptional regulator
1009	 68.66	0	1077295..1079406	+	703	167644982	-	Caul_1017	-	flagellar biosynthesis protein FlhA
1010	 72.41	+1	1079686..1080225	+	179	167644983	-	Caul_1018	-	hypothetical protein
1011	 69.59	0	1080353..1080763	+	136	167644984	-	Caul_1019	-	hypothetical protein
1012	 66.44	0	1080886..1081335	+	149	167644985	-	Caul_1020	-	XRE family transcriptional regulator
1013	 70.87	0	1081338..1082504	-	388	167644986	-	Caul_1021	-	endo-1,4-beta-xylanase
1014	 67.38	0	1082494..1082913	-	139	167644987	-	Caul_1022	-	FliJ protein
1015	 70.03	0	1082913..1084250	-	445	167644988	-	Caul_1023	-	flagellum-specific ATP synthase
1016	 71.00	0	1084434..1085426	-	330	167644989	-	Caul_1024	-	hypothetical protein
1017	 70.06	0	1085554..1086348	+	264	167644990	-	Caul_1025	-	response regulator receiver protein
1018	 61.06	-1	1086755..1087450	+	231	167644991	-	Caul_1026	-	two component transcriptional regulator
1019	 71.18	0	1087680..1089074	+	464	167644992	-	Caul_1027	-	peptidase M23B
1020	 67.03	0	1089407..1090522	+	371	167644993	-	Caul_1028	-	acyltransferase 3
1021	 55.44	-2	1090650..1090943	+	97	167644994	-	Caul_1029	-	hypothetical protein
1022	 57.19	-2	1090971..1091276	-	101	167644995	-	Caul_1030	-	hypothetical protein
1023	 66.98	0	1091344..1091658	+	104	167644996	-	Caul_1031	-	transposase IS3/IS911 family protein
1024	 67.83	0	1091655..1092515	+	286	167644997	-	Caul_1032	-	integrase catalytic region
1025	 69.68	0	1092583..1093278	-	231	167644998	-	Caul_1033	-	hydrolase
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.