IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
858	 68.94	0	919461..920690	+	409	167644831	-	Caul_0865	-	OmpA/MotB domain-containing protein
859	 76.14	+2	921034..922839	-	601	167644832	-	Caul_0866	-	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
860	 64.60	0	923400..924269	-	289	167644833	-	Caul_0867	-	flagellar motor protein MotA
861	 70.43	0	924629..925957	+	442	167644834	-	Caul_0868	-	major facilitator transporter
862	 67.53	0	926071..926418	-	115	167644835	-	Caul_0869	-	hypothetical protein
863	 62.11	-1	926415..926699	-	94	167644836	-	Caul_0870	-	hypothetical protein
864	 73.02	+1	926753..928042	-	429	167644837	-	Caul_0871	-	lytic murein transglycosylase
865	 69.30	0	928099..928743	-	214	167644838	-	Caul_0872	-	methyltransferase type 12
866	 57.14	-2	928921..929046	+	41	167644839	-	Caul_0873	-	ribosomal protein L36
867	 68.45	0	929046..929663	+	205	167644840	-	Caul_0874	-	HAD family hydrolase
868	 73.68	+1	929845..930714	+	289	167644841	-	Caul_0875	-	6-phosphogluconate dehydrogenase NAD-binding
869	 64.81	0	930807..931076	+	89	167644842	-	Caul_0876	-	hypothetical protein
870	 70.69	0	931222..931569	+	115	167644843	-	Caul_0877	-	hypothetical protein
871	 70.75	0	931842..932306	+	154	167644844	-	Caul_0878	-	hypothetical protein
872	 68.23	0	932653..934122	-	489	167644845	-	Caul_0879	-	two component, sigma54 specific, Fis family transcriptional regulator
873	 69.17	0	934285..934683	-	132	167644846	-	Caul_0880	-	hypothetical protein
874	 70.86	0	934774..935178	-	134	167644847	-	Caul_0881	-	hypothetical protein
875	 69.51	0	935323..937149	+	608	167644848	-	Caul_0882	-	pepF/M3 family oligoendopeptidase
876	 71.05	0	937324..938691	+	455	167644849	-	Caul_0883	-	hypothetical protein
877	 70.73	0	938814..939674	+	286	167644850	-	Caul_0884	-	pirin domain-containing protein
878	 67.84	0	939832..940428	-	198	167644851	-	Caul_0885	-	hypothetical protein
879	 72.51	+1	940418..940930	-	170	167644852	-	Caul_0886	-	ECF subfamily RNA polymerase sigma-24 factor
880	 67.72	0	941051..941524	+	157	167644853	-	Caul_0887	-	thioesterase superfamily protein
881	 71.75	+1	941528..942451	+	307	167644854	-	Caul_0888	-	alpha/beta hydrolase fold
882	 70.82	0	942611..943645	+	344	167644855	-	Caul_0889	-	glycosyl transferase family protein
883	 64.50	0	943706..943936	+	76	167644856	-	Caul_0890	-	aa3 type cytochrome c oxidase subunit IV
884	 69.57	0	944063..945199	+	378	167644857	-	Caul_0891	-	NAD(P)(+) transhydrogenase (AB-specific)
885	 67.26	0	945331..945669	+	112	167644858	-	Caul_0892	-	NAD(P) transhydrogenase, alpha2 subunit
886	 61.96	-1	945666..946685	+	339	167644859	-	Caul_0893	-	hypothetical protein
887	 69.03	0	946688..947575	+	295	167644860	-	Caul_0894	-	hypothetical protein
888	 67.30	0	947577..948995	+	472	167644861	-	Caul_0895	-	NAD(P)(+) transhydrogenase (AB-specific)
889	 60.99	-1	949078..949359	-	93	167644862	-	Caul_0896	-	hypothetical protein
890	 68.01	0	949475..949996	+	173	167644863	-	Caul_0897	-	hypothetical protein
891	 72.33	+1	950309..951103	+	264	167644864	-	Caul_0898	-	peptidase M23B
892	 74.25	+1	951157..952119	+	320	167644865	-	Caul_0899	-	hypothetical protein
893	 63.33	-1	952326..952595	-	89	167644866	-	Caul_0900	-	30S ribosomal protein S21
894	 71.84	+1	952746..953402	+	218	167644867	-	Caul_0901	-	rpsU-divergently transcribed protein
895	 70.37	0	954128..954829	-	233	167644868	-	Caul_0902	-	aspartate racemase
896	 71.87	+1	954897..955991	-	364	167644869	-	Caul_0903	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
897	 70.44	0	955991..956494	-	167	167644870	-	Caul_0904	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
898	 71.11	0	956747..957466	+	239	167644871	-	Caul_0905	-	diguanylate cyclase
899	 65.34	0	957584..957961	+	125	167644872	-	Caul_0906	-	response regulator receiver protein
900	 68.78	0	958037..958510	+	157	167644873	-	Caul_0907	-	OsmC family protein
901	 66.22	0	958735..958956	-	73	167644874	-	Caul_0908	-	hypothetical protein
902	 73.59	+1	959039..959500	-	153	167644875	-	Caul_0909	-	hypothetical protein
903	 66.83	0	959524..960135	-	203	167644876	-	Caul_0910	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
904	 62.64	-1	960265..960438	+	57	167644877	-	Caul_0911	-	hypothetical protein
905	 66.67	0	960696..961415	-	239	167644878	-	Caul_0912	-	hypothetical protein
906	 70.72	0	961553..962539	-	328	167644879	-	Caul_0913	-	PIG3 family NAD(P)H quinone oxidoreductase
907	 66.67	0	962628..962834	+	68	167644880	-	Caul_0914	-	hypothetical protein
908	 69.23	0	962997..963503	+	168	167644881	-	Caul_0915	-	hypothetical protein
909	 59.03	-2	963721..964008	+	95	167644882	-	Caul_0916	-	excinuclease ABC subunit C
910	 62.08	-1	964256..964495	-	79	167644883	-	Caul_0917	-	50S ribosomal protein L31
911	 70.83	0	964601..966451	+	616	167644884	-	Caul_0918	-	lipid ABC transporter ATPase/inner membrane protein
912	 68.61	0	966489..966797	-	102	167644885	-	Caul_0919	-	hypothetical protein
913	 76.84	+2	967052..967759	-	235	167644886	-	Caul_0920	-	ArsR family transcriptional regulator
914	 73.32	+1	967893..969260	+	455	167644887	-	Caul_0921	-	major facilitator transporter
915	 65.98	0	969465..972230	-	921	167644888	-	Caul_0922	-	preprotein translocase subunit SecA
916	 71.10	0	972756..973748	+	330	167644889	-	Caul_0923	-	PpiC-type peptidyl-prolyl cis-trans isomerase
917	 70.64	0	973745..975280	+	511	167644890	-	Caul_0924	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
918	 69.89	0	975456..975920	+	154	167644891	-	Caul_0925	-	hypothetical protein
919	 70.95	0	975921..976574	-	217	167644892	-	Caul_0926	-	glutathione S-transferase domain-containing protein
920	 65.25	0	976726..977079	-	117	167644893	-	Caul_0927	-	hypothetical protein
921	 77.21	+2	977116..977466	-	116	167644894	-	Caul_0928	-	hypothetical protein
922	 70.47	0	977829..978590	+	253	167644895	-	Caul_0929	-	ABC transporter related
923	 74.58	+1	978587..980140	+	517	167644896	-	Caul_0930	-	hypothetical protein
924	 69.01	0	980232..980444	+	70	167644897	-	Caul_0931	-	hypothetical protein
925	 71.32	0	980595..982874	-	759	167644898	-	Caul_0932	-	signal transduction histidine kinase
926	 69.86	0	983065..984504	-	479	167644899	-	Caul_0933	-	DEAD/DEAH box helicase domain-containing protein
927	 68.12	0	984883..985227	-	114	167644900	-	Caul_0934	-	PRC-barrel domain-containing protein
928	 69.16	0	985407..986690	+	427	167644901	-	Caul_0935	-	major facilitator transporter
929	 70.26	0	986693..988333	+	546	167644902	-	Caul_0936	-	Alpha-N-arabinofuranosidase
930	 66.91	0	988410..988814	+	134	167644903	-	Caul_0937	-	mutator MutT protein
931	 72.57	+1	989172..990086	-	304	167644904	-	Caul_0938	-	methyltransferase type 11
932	 73.61	+1	990229..990876	+	215	167644905	-	Caul_0939	-	phosphoribosyltransferase
933	 67.84	0	990908..991162	+	84	167644906	-	Caul_0940	-	glutaredoxin 3
934	 71.80	+1	991159..991995	+	278	167644907	-	Caul_0941	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
935	 68.97	0	992011..992445	+	144	167644908	-	Caul_0942	-	hypothetical protein
936	 66.98	0	992541..992855	-	104	167644909	-	Caul_0943	-	17 kDa surface antigen
937	 68.11	0	992987..994027	-	346	167644910	-	Caul_0944	-	17 kDa surface antigen
938	 63.61	-1	994139..994531	-	130	167644911	-	Caul_0945	-	PilT domain-containing protein
939	 66.13	0	994528..994902	-	124	167644912	-	Caul_0946	-	hypothetical protein
940	 70.09	0	994913..995671	-	252	167644913	-	Caul_0947	-	3-demethylubiquinone-9 3-methyltransferase
941	 65.90	0	996050..996571	-	173	167644914	-	Caul_0949	-	hypothetical protein
942	 67.63	0	996777..998024	+	415	167644915	-	Caul_0950	-	aspartate kinase
943	 67.10	0	998615..999076	+	153	167644916	-	Caul_0951	-	hypothetical protein
944	 70.52	0	999125..1000111	+	328	167644917	-	Caul_0952	-	hypothetical protein
945	 69.12	0	1000358..1000846	+	162	167644918	-	Caul_0953	-	hypothetical protein
946	 70.30	0	1001111..1003312	+	733	167644919	-	Caul_0954	-	phosphoenolpyruvate-protein phosphotransferase PtsP
947	 74.49	+1	1003472..1004545	+	357	167644920	-	Caul_0955	-	hypothetical protein
948	 75.78	+2	1004851..1005651	-	266	167644921	-	Caul_0956	-	hypothetical protein
949	 68.42	0	1005773..1006912	+	379	167644922	-	Caul_0957	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
950	 65.38	0	1007068..1008780	-	570	167644923	-	Caul_0958	-	SSS family solute/sodium (Na+) symporter
951	 65.43	0	1008777..1009100	-	107	167644924	-	Caul_0959	-	hypothetical protein
952	 66.94	0	1009375..1010475	+	366	167644925	-	Caul_0960	-	alpha/beta hydrolase domain-containing protein
953	 68.79	0	1010497..1011816	+	439	167644926	-	Caul_0961	-	GDSL family lipase
954	 67.87	0	1011964..1013211	+	415	167644927	-	Caul_0962	-	major facilitator transporter
955	 70.18	0	1013238..1014290	-	350	167644928	-	Caul_0963	-	alpha/beta hydrolase domain-containing protein
956	 68.31	0	1014911..1016068	+	385	167644929	-	Caul_0964	-	levansucrase
957	 70.42	0	1016071..1016976	+	301	167644930	-	Caul_0965	-	ROK family protein
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.