IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
835	 57.36	-2	898455..898712	-	85	167644808	-	Caul_0842	-	hypothetical protein
836	 67.02	0	898834..899118	-	94	167644809	-	Caul_0843	-	plasmid stabilization system protein
837	 67.35	0	899115..899408	-	97	167644810	-	Caul_0844	-	hypothetical protein
838	 70.45	0	899533..899823	+	96	167644811	-	Caul_0845	-	DNA polymerase beta subunit
839	 63.19	-1	899816..900160	+	114	167644812	-	Caul_0846	-	hypothetical protein
840	 73.71	+1	900157..901533	-	458	167644813	-	Caul_0847	-	major facilitator transporter
841	 70.92	0	901657..902409	+	250	167644814	-	Caul_0848	-	extensin family protein
842	 65.22	0	902419..902901	-	160	167644815	-	Caul_0849	-	activator of Hsp90 ATPase 1 family protein
843	 63.25	-1	902984..903451	-	155	167644816	-	Caul_0850	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
844	 67.32	0	903606..904370	+	254	167644817	-	Caul_0851	-	short-chain dehydrogenase/reductase SDR
845	 69.26	0	904702..907281	+	859	167644818	-	Caul_0852	-	integral membrane sensor hybrid histidine kinase
846	 61.31	-1	907333..907743	+	136	167644819	-	Caul_0853	-	hypothetical protein
847	 69.52	0	907828..908283	-	151	167644820	-	Caul_0854	-	BadM/Rrf2 family transcriptional regulator
848	 69.04	0	908406..909080	+	224	167644821	-	Caul_0855	-	hypothetical protein
849	 68.54	0	909121..910350	+	409	167644822	-	Caul_0856	-	nitric oxide dioxygenase
850	 70.92	0	910462..911613	-	383	167644823	-	Caul_0857	-	hypothetical protein
851	 68.73	0	911774..913372	+	532	167644824	-	Caul_0858	-	transporter, putative
852	 71.96	+1	913372..914448	+	358	167644825	-	Caul_0859	-	secretion protein HlyD family protein
853	 61.63	-1	914524..914781	+	85	167644826	-	Caul_0860	-	transglycosylase-associated protein
854	 64.98	0	914923..916755	-	610	167644827	-	Caul_0861	-	GTP-binding protein TypA
855	 72.19	+1	917300..918259	-	319	167644828	-	Caul_0862	-	N-formylglutamate amidohydrolase
856	 70.03	0	918438..918794	+	118	167644829	-	Caul_0863	-	response regulator receiver protein
857	 67.39	0	918823..919098	+	91	167644830	-	Caul_0864	-	hypothetical protein
858	 68.94	0	919461..920690	+	409	167644831	-	Caul_0865	-	OmpA/MotB domain-containing protein
859	 76.14	+2	921034..922839	-	601	167644832	-	Caul_0866	-	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
860	 64.60	0	923400..924269	-	289	167644833	-	Caul_0867	-	flagellar motor protein MotA
861	 70.43	0	924629..925957	+	442	167644834	-	Caul_0868	-	major facilitator transporter
862	 67.53	0	926071..926418	-	115	167644835	-	Caul_0869	-	hypothetical protein
863	 62.11	-1	926415..926699	-	94	167644836	-	Caul_0870	-	hypothetical protein
864	 73.02	+1	926753..928042	-	429	167644837	-	Caul_0871	-	lytic murein transglycosylase
865	 69.30	0	928099..928743	-	214	167644838	-	Caul_0872	-	methyltransferase type 12
866	 57.14	-2	928921..929046	+	41	167644839	-	Caul_0873	-	ribosomal protein L36
867	 68.45	0	929046..929663	+	205	167644840	-	Caul_0874	-	HAD family hydrolase
868	 73.68	+1	929845..930714	+	289	167644841	-	Caul_0875	-	6-phosphogluconate dehydrogenase NAD-binding
869	 64.81	0	930807..931076	+	89	167644842	-	Caul_0876	-	hypothetical protein
870	 70.69	0	931222..931569	+	115	167644843	-	Caul_0877	-	hypothetical protein
871	 70.75	0	931842..932306	+	154	167644844	-	Caul_0878	-	hypothetical protein
872	 68.23	0	932653..934122	-	489	167644845	-	Caul_0879	-	two component, sigma54 specific, Fis family transcriptional regulator
873	 69.17	0	934285..934683	-	132	167644846	-	Caul_0880	-	hypothetical protein
874	 70.86	0	934774..935178	-	134	167644847	-	Caul_0881	-	hypothetical protein
875	 69.51	0	935323..937149	+	608	167644848	-	Caul_0882	-	pepF/M3 family oligoendopeptidase
876	 71.05	0	937324..938691	+	455	167644849	-	Caul_0883	-	hypothetical protein
877	 70.73	0	938814..939674	+	286	167644850	-	Caul_0884	-	pirin domain-containing protein
878	 67.84	0	939832..940428	-	198	167644851	-	Caul_0885	-	hypothetical protein
879	 72.51	+1	940418..940930	-	170	167644852	-	Caul_0886	-	ECF subfamily RNA polymerase sigma-24 factor
880	 67.72	0	941051..941524	+	157	167644853	-	Caul_0887	-	thioesterase superfamily protein
881	 71.75	+1	941528..942451	+	307	167644854	-	Caul_0888	-	alpha/beta hydrolase fold
882	 70.82	0	942611..943645	+	344	167644855	-	Caul_0889	-	glycosyl transferase family protein
883	 64.50	0	943706..943936	+	76	167644856	-	Caul_0890	-	aa3 type cytochrome c oxidase subunit IV
884	 69.57	0	944063..945199	+	378	167644857	-	Caul_0891	-	NAD(P)(+) transhydrogenase (AB-specific)
885	 67.26	0	945331..945669	+	112	167644858	-	Caul_0892	-	NAD(P) transhydrogenase, alpha2 subunit
886	 61.96	-1	945666..946685	+	339	167644859	-	Caul_0893	-	hypothetical protein
887	 69.03	0	946688..947575	+	295	167644860	-	Caul_0894	-	hypothetical protein
888	 67.30	0	947577..948995	+	472	167644861	-	Caul_0895	-	NAD(P)(+) transhydrogenase (AB-specific)
889	 60.99	-1	949078..949359	-	93	167644862	-	Caul_0896	-	hypothetical protein
890	 68.01	0	949475..949996	+	173	167644863	-	Caul_0897	-	hypothetical protein
891	 72.33	+1	950309..951103	+	264	167644864	-	Caul_0898	-	peptidase M23B
892	 74.25	+1	951157..952119	+	320	167644865	-	Caul_0899	-	hypothetical protein
893	 63.33	-1	952326..952595	-	89	167644866	-	Caul_0900	-	30S ribosomal protein S21
894	 71.84	+1	952746..953402	+	218	167644867	-	Caul_0901	-	rpsU-divergently transcribed protein
895	 70.37	0	954128..954829	-	233	167644868	-	Caul_0902	-	aspartate racemase
896	 71.87	+1	954897..955991	-	364	167644869	-	Caul_0903	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
897	 70.44	0	955991..956494	-	167	167644870	-	Caul_0904	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
898	 71.11	0	956747..957466	+	239	167644871	-	Caul_0905	-	diguanylate cyclase
899	 65.34	0	957584..957961	+	125	167644872	-	Caul_0906	-	response regulator receiver protein
900	 68.78	0	958037..958510	+	157	167644873	-	Caul_0907	-	OsmC family protein
901	 66.22	0	958735..958956	-	73	167644874	-	Caul_0908	-	hypothetical protein
902	 73.59	+1	959039..959500	-	153	167644875	-	Caul_0909	-	hypothetical protein
903	 66.83	0	959524..960135	-	203	167644876	-	Caul_0910	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
904	 62.64	-1	960265..960438	+	57	167644877	-	Caul_0911	-	hypothetical protein
905	 66.67	0	960696..961415	-	239	167644878	-	Caul_0912	-	hypothetical protein
906	 70.72	0	961553..962539	-	328	167644879	-	Caul_0913	-	PIG3 family NAD(P)H quinone oxidoreductase
907	 66.67	0	962628..962834	+	68	167644880	-	Caul_0914	-	hypothetical protein
908	 69.23	0	962997..963503	+	168	167644881	-	Caul_0915	-	hypothetical protein
909	 59.03	-2	963721..964008	+	95	167644882	-	Caul_0916	-	excinuclease ABC subunit C
910	 62.08	-1	964256..964495	-	79	167644883	-	Caul_0917	-	50S ribosomal protein L31
911	 70.83	0	964601..966451	+	616	167644884	-	Caul_0918	-	lipid ABC transporter ATPase/inner membrane protein
912	 68.61	0	966489..966797	-	102	167644885	-	Caul_0919	-	hypothetical protein
913	 76.84	+2	967052..967759	-	235	167644886	-	Caul_0920	-	ArsR family transcriptional regulator
914	 73.32	+1	967893..969260	+	455	167644887	-	Caul_0921	-	major facilitator transporter
915	 65.98	0	969465..972230	-	921	167644888	-	Caul_0922	-	preprotein translocase subunit SecA
916	 71.10	0	972756..973748	+	330	167644889	-	Caul_0923	-	PpiC-type peptidyl-prolyl cis-trans isomerase
917	 70.64	0	973745..975280	+	511	167644890	-	Caul_0924	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
918	 69.89	0	975456..975920	+	154	167644891	-	Caul_0925	-	hypothetical protein
919	 70.95	0	975921..976574	-	217	167644892	-	Caul_0926	-	glutathione S-transferase domain-containing protein
920	 65.25	0	976726..977079	-	117	167644893	-	Caul_0927	-	hypothetical protein
921	 77.21	+2	977116..977466	-	116	167644894	-	Caul_0928	-	hypothetical protein
922	 70.47	0	977829..978590	+	253	167644895	-	Caul_0929	-	ABC transporter related
923	 74.58	+1	978587..980140	+	517	167644896	-	Caul_0930	-	hypothetical protein
924	 69.01	0	980232..980444	+	70	167644897	-	Caul_0931	-	hypothetical protein
925	 71.32	0	980595..982874	-	759	167644898	-	Caul_0932	-	signal transduction histidine kinase
926	 69.86	0	983065..984504	-	479	167644899	-	Caul_0933	-	DEAD/DEAH box helicase domain-containing protein
927	 68.12	0	984883..985227	-	114	167644900	-	Caul_0934	-	PRC-barrel domain-containing protein
928	 69.16	0	985407..986690	+	427	167644901	-	Caul_0935	-	major facilitator transporter
929	 70.26	0	986693..988333	+	546	167644902	-	Caul_0936	-	Alpha-N-arabinofuranosidase
930	 66.91	0	988410..988814	+	134	167644903	-	Caul_0937	-	mutator MutT protein
931	 72.57	+1	989172..990086	-	304	167644904	-	Caul_0938	-	methyltransferase type 11
932	 73.61	+1	990229..990876	+	215	167644905	-	Caul_0939	-	phosphoribosyltransferase
933	 67.84	0	990908..991162	+	84	167644906	-	Caul_0940	-	glutaredoxin 3
934	 71.80	+1	991159..991995	+	278	167644907	-	Caul_0941	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.