IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
794	 64.25	0	851757..852128	+	123	167644767	-	Caul_0801	-	30S ribosomal protein S12
795	 62.66	-1	852141..852614	+	157	167644768	-	Caul_0802	-	30S ribosomal protein S7
796	 63.35	-1	852729..854807	+	692	167644769	-	Caul_0803	-	elongation factor G
797	 64.57	0	854927..856117	+	396	167644770	-	Caul_0804	-	elongation factor Tu
798	 73.54	+1	856298..856792	+	164	167644771	-	Caul_0805	-	hypothetical protein
799	 68.74	0	856925..860053	-	1042	167644772	-	Caul_0806	-	acriflavin resistance protein
800	 73.82	+1	860053..861129	-	358	167644773	-	Caul_0807	-	RND family efflux transporter MFP subunit
801	 71.17	0	861126..862634	-	502	167644774	-	Caul_0808	-	RND efflux system outer membrane lipoprotein
802	 66.23	0	862684..863145	-	153	167644775	-	Caul_0809	-	MarR family transcriptional regulator
803	 69.56	0	863519..864832	-	437	167644776	-	Caul_0810	-	TetR family transcriptional regulator
804	 70.69	0	865009..866994	-	661	167644777	-	Caul_0811	-	PAS/PAC sensor hybrid histidine kinase
805	 64.79	0	867126..868352	+	408	167644778	-	Caul_0812	-	beta-lactamase
806	 66.04	0	868936..871014	+	692	167644779	-	Caul_0813	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
807	 68.40	0	871141..872694	+	517	167644780	-	Caul_0814	-	AMP-dependent synthetase and ligase
808	 73.45	+1	872826..873812	+	328	167644781	-	Caul_0815	-	DegT/DnrJ/EryC1/StrS aminotransferase
809	 67.45	0	873927..874946	-	339	167644782	-	Caul_0816	-	adenosine deaminase
810	 71.83	+1	875620..876006	+	128	167644783	-	Caul_0817	-	hypothetical protein
811	 68.80	0	876152..877042	-	296	167644784	-	Caul_0818	-	pirin domain-containing protein
812	 65.01	0	877292..877834	-	180	167644785	-	Caul_0819	-	AsnC family transcriptional regulator
813	 68.36	0	877932..881363	+	1143	167644786	-	Caul_0820	-	indolepyruvate ferredoxin oxidoreductase
814	 67.85	0	881523..882701	-	392	167644787	-	Caul_0821	-	hypothetical protein
815	 65.33	0	882870..883169	+	99	167644788	-	Caul_0822	-	hypothetical protein
816	 70.25	0	883237..884352	+	371	167644789	-	Caul_0823	-	FAD dependent oxidoreductase
817	 69.35	0	884411..884782	+	123	167644790	-	Caul_0824	-	hypothetical protein
818	 70.61	0	884888..886105	-	405	167644791	-	Caul_0825	-	glucose sorbosone dehydrogenase
819	 72.55	+1	886373..887425	+	350	167644792	-	Caul_0826	-	glycosyl transferase group 1
820	 65.89	0	887627..887755	-	42	167644793	-	Caul_0827	-	hypothetical protein
821	 70.45	0	887961..888356	+	131	167644794	-	Caul_0828	-	DGPFAETKE family protein
822	 72.24	+1	888353..889609	+	418	167644795	-	Caul_0829	-	RNA polymerase ECF-subfamily sigma factor
823	 67.61	0	889890..890312	+	140	167644796	-	Caul_0830	-	glyoxalase/bleomycin resistance protein/dioxygenase
824	 66.29	0	890368..890895	+	175	167644797	-	Caul_0831	-	hypothetical protein
825	 70.08	0	890916..891911	-	331	167644798	-	Caul_0832	-	glucokinase
826	 68.08	0	892123..892476	+	117	167644799	-	Caul_0833	-	type IV pilus assembly PilZ
827	 64.38	0	892546..892983	-	145	167644800	-	Caul_0834	-	XRE family transcriptional regulator
828	 65.45	0	893278..893607	+	109	167644801	-	Caul_0835	-	hypothetical protein
829	 68.02	0	893697..895685	+	662	167644802	-	Caul_0836	-	methylmalonyl-CoA mutase, large subunit
830	 64.62	0	895750..895944	+	64	167644803	-	Caul_0837	-	hypothetical protein
831	 66.41	0	895941..896336	+	131	167644804	-	Caul_0838	-	PilT domain-containing protein
832	 53.07	-2	896380..897225	-	281	167644805	-	Caul_0839	-	hypothetical protein
833	 67.83	0	897256..898116	-	286	167644806	-	Caul_0840	-	integrase catalytic region
834	 66.98	0	898113..898427	-	104	167644807	-	Caul_0841	-	transposase IS3/IS911 family protein
835	 57.36	-2	898455..898712	-	85	167644808	-	Caul_0842	-	hypothetical protein
836	 67.02	0	898834..899118	-	94	167644809	-	Caul_0843	-	plasmid stabilization system protein
837	 67.35	0	899115..899408	-	97	167644810	-	Caul_0844	-	hypothetical protein
838	 70.45	0	899533..899823	+	96	167644811	-	Caul_0845	-	DNA polymerase beta subunit
839	 63.19	-1	899816..900160	+	114	167644812	-	Caul_0846	-	hypothetical protein
840	 73.71	+1	900157..901533	-	458	167644813	-	Caul_0847	-	major facilitator transporter
841	 70.92	0	901657..902409	+	250	167644814	-	Caul_0848	-	extensin family protein
842	 65.22	0	902419..902901	-	160	167644815	-	Caul_0849	-	activator of Hsp90 ATPase 1 family protein
843	 63.25	-1	902984..903451	-	155	167644816	-	Caul_0850	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
844	 67.32	0	903606..904370	+	254	167644817	-	Caul_0851	-	short-chain dehydrogenase/reductase SDR
845	 69.26	0	904702..907281	+	859	167644818	-	Caul_0852	-	integral membrane sensor hybrid histidine kinase
846	 61.31	-1	907333..907743	+	136	167644819	-	Caul_0853	-	hypothetical protein
847	 69.52	0	907828..908283	-	151	167644820	-	Caul_0854	-	BadM/Rrf2 family transcriptional regulator
848	 69.04	0	908406..909080	+	224	167644821	-	Caul_0855	-	hypothetical protein
849	 68.54	0	909121..910350	+	409	167644822	-	Caul_0856	-	nitric oxide dioxygenase
850	 70.92	0	910462..911613	-	383	167644823	-	Caul_0857	-	hypothetical protein
851	 68.73	0	911774..913372	+	532	167644824	-	Caul_0858	-	transporter, putative
852	 71.96	+1	913372..914448	+	358	167644825	-	Caul_0859	-	secretion protein HlyD family protein
853	 61.63	-1	914524..914781	+	85	167644826	-	Caul_0860	-	transglycosylase-associated protein
854	 64.98	0	914923..916755	-	610	167644827	-	Caul_0861	-	GTP-binding protein TypA
855	 72.19	+1	917300..918259	-	319	167644828	-	Caul_0862	-	N-formylglutamate amidohydrolase
856	 70.03	0	918438..918794	+	118	167644829	-	Caul_0863	-	response regulator receiver protein
857	 67.39	0	918823..919098	+	91	167644830	-	Caul_0864	-	hypothetical protein
858	 68.94	0	919461..920690	+	409	167644831	-	Caul_0865	-	OmpA/MotB domain-containing protein
859	 76.14	+2	921034..922839	-	601	167644832	-	Caul_0866	-	tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC
860	 64.60	0	923400..924269	-	289	167644833	-	Caul_0867	-	flagellar motor protein MotA
861	 70.43	0	924629..925957	+	442	167644834	-	Caul_0868	-	major facilitator transporter
862	 67.53	0	926071..926418	-	115	167644835	-	Caul_0869	-	hypothetical protein
863	 62.11	-1	926415..926699	-	94	167644836	-	Caul_0870	-	hypothetical protein
864	 73.02	+1	926753..928042	-	429	167644837	-	Caul_0871	-	lytic murein transglycosylase
865	 69.30	0	928099..928743	-	214	167644838	-	Caul_0872	-	methyltransferase type 12
866	 57.14	-2	928921..929046	+	41	167644839	-	Caul_0873	-	ribosomal protein L36
867	 68.45	0	929046..929663	+	205	167644840	-	Caul_0874	-	HAD family hydrolase
868	 73.68	+1	929845..930714	+	289	167644841	-	Caul_0875	-	6-phosphogluconate dehydrogenase NAD-binding
869	 64.81	0	930807..931076	+	89	167644842	-	Caul_0876	-	hypothetical protein
870	 70.69	0	931222..931569	+	115	167644843	-	Caul_0877	-	hypothetical protein
871	 70.75	0	931842..932306	+	154	167644844	-	Caul_0878	-	hypothetical protein
872	 68.23	0	932653..934122	-	489	167644845	-	Caul_0879	-	two component, sigma54 specific, Fis family transcriptional regulator
873	 69.17	0	934285..934683	-	132	167644846	-	Caul_0880	-	hypothetical protein
874	 70.86	0	934774..935178	-	134	167644847	-	Caul_0881	-	hypothetical protein
875	 69.51	0	935323..937149	+	608	167644848	-	Caul_0882	-	pepF/M3 family oligoendopeptidase
876	 71.05	0	937324..938691	+	455	167644849	-	Caul_0883	-	hypothetical protein
877	 70.73	0	938814..939674	+	286	167644850	-	Caul_0884	-	pirin domain-containing protein
878	 67.84	0	939832..940428	-	198	167644851	-	Caul_0885	-	hypothetical protein
879	 72.51	+1	940418..940930	-	170	167644852	-	Caul_0886	-	ECF subfamily RNA polymerase sigma-24 factor
880	 67.72	0	941051..941524	+	157	167644853	-	Caul_0887	-	thioesterase superfamily protein
881	 71.75	+1	941528..942451	+	307	167644854	-	Caul_0888	-	alpha/beta hydrolase fold
882	 70.82	0	942611..943645	+	344	167644855	-	Caul_0889	-	glycosyl transferase family protein
883	 64.50	0	943706..943936	+	76	167644856	-	Caul_0890	-	aa3 type cytochrome c oxidase subunit IV
884	 69.57	0	944063..945199	+	378	167644857	-	Caul_0891	-	NAD(P)(+) transhydrogenase (AB-specific)
885	 67.26	0	945331..945669	+	112	167644858	-	Caul_0892	-	NAD(P) transhydrogenase, alpha2 subunit
886	 61.96	-1	945666..946685	+	339	167644859	-	Caul_0893	-	hypothetical protein
887	 69.03	0	946688..947575	+	295	167644860	-	Caul_0894	-	hypothetical protein
888	 67.30	0	947577..948995	+	472	167644861	-	Caul_0895	-	NAD(P)(+) transhydrogenase (AB-specific)
889	 60.99	-1	949078..949359	-	93	167644862	-	Caul_0896	-	hypothetical protein
890	 68.01	0	949475..949996	+	173	167644863	-	Caul_0897	-	hypothetical protein
891	 72.33	+1	950309..951103	+	264	167644864	-	Caul_0898	-	peptidase M23B
892	 74.25	+1	951157..952119	+	320	167644865	-	Caul_0899	-	hypothetical protein
893	 63.33	-1	952326..952595	-	89	167644866	-	Caul_0900	-	30S ribosomal protein S21
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.