IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
757	 68.17	0	816002..816400	-	132	167644730	-	Caul_0764	-	AtsE
758	 65.75	0	816539..817630	-	363	167644731	-	Caul_0765	-	fructose-1,6-bisphosphate aldolase
759	 67.59	0	817839..819029	-	396	167644732	-	Caul_0766	-	phosphoglycerate kinase
760	 67.26	0	819215..820222	-	335	167644733	-	Caul_0767	-	glyceraldehyde-3-phosphate dehydrogenase, type I
761	 70.76	0	820389..820877	+	162	167644734	-	Caul_0768	-	hypothetical protein
762	 67.89	0	820881..821207	+	108	167644735	-	Caul_0769	-	hypothetical protein
763	 61.36	-1	821267..821605	+	112	167644736	-	Caul_0770	-	hypothetical protein
764	 70.06	0	821575..822753	-	392	167644737	-	Caul_0771	-	GntR family transcriptional regulator
765	 66.89	0	822827..823267	+	146	167644738	-	Caul_0772	-	MarR family transcriptional regulator
766	 58.62	-2	823275..823535	-	86	167644739	-	Caul_0773	-	plasmid stabilization system protein
767	 63.08	-1	823662..823856	-	64	167644740	-	Caul_0774	-	CopG/Arc/MetJ family addiction module antidote protein
768	 69.93	0	824142..824753	+	203	167644741	-	Caul_0775	-	5-formyltetrahydrofolate cyclo-ligase
769	 70.07	0	824758..825579	+	273	167644742	-	Caul_0776	-	metallophosphoesterase
770	 64.55	0	825710..826369	-	219	167644743	-	Caul_0777	-	peroxidase
771	 66.91	0	826553..826966	+	137	167644744	-	Caul_0778	-	OsmC family protein
772	 72.61	+1	827083..827385	-	100	167644745	-	Caul_0779	-	hypothetical protein
773	 65.74	0	827494..828249	+	251	167644746	-	Caul_0780	-	hypothetical protein
774	 70.74	0	828484..829122	+	212	167644747	-	Caul_0781	-	hypothetical protein
775	 73.40	+1	829190..830125	+	311	167644748	-	Caul_0782	-	inosine/uridine-preferring nucleoside hydrolase
776	 69.98	0	830122..830634	-	170	167644749	-	Caul_0783	-	hypothetical protein
777	 69.61	0	830778..831287	+	169	167644750	-	Caul_0784	-	crossover junction endodeoxyribonuclease RuvC
778	 73.82	+1	831284..831898	+	204	167644751	-	Caul_0785	-	DNA recombination protein RuvA
779	 70.58	0	832044..833090	+	348	167644752	-	Caul_0786	-	Holliday junction DNA helicase B
780	 66.22	0	833140..833586	+	148	167644753	-	Caul_0787	-	tol-pal system-associated acyl-CoA thioesterase
781	 69.08	0	833646..835013	-	455	167644754	-	Caul_0788	-	histidine triad (HIT) protein
782	 62.81	-1	835429..835947	+	172	167644755	-	Caul_0789	-	ribosomal protein L10
783	 62.47	-1	835990..836370	+	126	167644756	-	Caul_0790	-	ribosomal protein L7/L12
784	 70.14	0	836613..837302	+	229	167644757	-	Caul_0791	-	ThiJ/PfpI domain-containing protein
785	 64.89	0	837411..838085	-	224	167644758	-	Caul_0792	-	diguanylate phosphodiesterase
786	 56.60	-2	838216..838374	+	52	167644759	-	Caul_0793	-	hypothetical protein
787	 64.98	0	838718..842800	+	1360	167644760	-	Caul_0794	-	DNA-directed RNA polymerase subunit beta
788	 64.68	0	842919..847103	+	1394	167644761	-	Caul_0795	-	DNA-directed RNA polymerase subunit beta'
789	 73.27	+1	847216..848109	-	297	167644762	-	Caul_0796	-	LysR family transcriptional regulator
790	 70.71	0	848217..848834	+	205	167644763	-	Caul_0797	-	glutathione S-transferase domain-containing protein
791	 70.89	0	848836..849759	+	307	167644764	-	Caul_0798	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
792	 73.28	+1	849783..850568	-	261	167644765	-	Caul_0799	-	hypothetical protein
793	 73.90	+1	850664..851410	-	248	167644766	-	Caul_0800	-	hypothetical protein
794	 64.25	0	851757..852128	+	123	167644767	-	Caul_0801	-	30S ribosomal protein S12
795	 62.66	-1	852141..852614	+	157	167644768	-	Caul_0802	-	30S ribosomal protein S7
796	 63.35	-1	852729..854807	+	692	167644769	-	Caul_0803	-	elongation factor G
797	 64.57	0	854927..856117	+	396	167644770	-	Caul_0804	-	elongation factor Tu
798	 73.54	+1	856298..856792	+	164	167644771	-	Caul_0805	-	hypothetical protein
799	 68.74	0	856925..860053	-	1042	167644772	-	Caul_0806	-	acriflavin resistance protein
800	 73.82	+1	860053..861129	-	358	167644773	-	Caul_0807	-	RND family efflux transporter MFP subunit
801	 71.17	0	861126..862634	-	502	167644774	-	Caul_0808	-	RND efflux system outer membrane lipoprotein
802	 66.23	0	862684..863145	-	153	167644775	-	Caul_0809	-	MarR family transcriptional regulator
803	 69.56	0	863519..864832	-	437	167644776	-	Caul_0810	-	TetR family transcriptional regulator
804	 70.69	0	865009..866994	-	661	167644777	-	Caul_0811	-	PAS/PAC sensor hybrid histidine kinase
805	 64.79	0	867126..868352	+	408	167644778	-	Caul_0812	-	beta-lactamase
806	 66.04	0	868936..871014	+	692	167644779	-	Caul_0813	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
807	 68.40	0	871141..872694	+	517	167644780	-	Caul_0814	-	AMP-dependent synthetase and ligase
808	 73.45	+1	872826..873812	+	328	167644781	-	Caul_0815	-	DegT/DnrJ/EryC1/StrS aminotransferase
809	 67.45	0	873927..874946	-	339	167644782	-	Caul_0816	-	adenosine deaminase
810	 71.83	+1	875620..876006	+	128	167644783	-	Caul_0817	-	hypothetical protein
811	 68.80	0	876152..877042	-	296	167644784	-	Caul_0818	-	pirin domain-containing protein
812	 65.01	0	877292..877834	-	180	167644785	-	Caul_0819	-	AsnC family transcriptional regulator
813	 68.36	0	877932..881363	+	1143	167644786	-	Caul_0820	-	indolepyruvate ferredoxin oxidoreductase
814	 67.85	0	881523..882701	-	392	167644787	-	Caul_0821	-	hypothetical protein
815	 65.33	0	882870..883169	+	99	167644788	-	Caul_0822	-	hypothetical protein
816	 70.25	0	883237..884352	+	371	167644789	-	Caul_0823	-	FAD dependent oxidoreductase
817	 69.35	0	884411..884782	+	123	167644790	-	Caul_0824	-	hypothetical protein
818	 70.61	0	884888..886105	-	405	167644791	-	Caul_0825	-	glucose sorbosone dehydrogenase
819	 72.55	+1	886373..887425	+	350	167644792	-	Caul_0826	-	glycosyl transferase group 1
820	 65.89	0	887627..887755	-	42	167644793	-	Caul_0827	-	hypothetical protein
821	 70.45	0	887961..888356	+	131	167644794	-	Caul_0828	-	DGPFAETKE family protein
822	 72.24	+1	888353..889609	+	418	167644795	-	Caul_0829	-	RNA polymerase ECF-subfamily sigma factor
823	 67.61	0	889890..890312	+	140	167644796	-	Caul_0830	-	glyoxalase/bleomycin resistance protein/dioxygenase
824	 66.29	0	890368..890895	+	175	167644797	-	Caul_0831	-	hypothetical protein
825	 70.08	0	890916..891911	-	331	167644798	-	Caul_0832	-	glucokinase
826	 68.08	0	892123..892476	+	117	167644799	-	Caul_0833	-	type IV pilus assembly PilZ
827	 64.38	0	892546..892983	-	145	167644800	-	Caul_0834	-	XRE family transcriptional regulator
828	 65.45	0	893278..893607	+	109	167644801	-	Caul_0835	-	hypothetical protein
829	 68.02	0	893697..895685	+	662	167644802	-	Caul_0836	-	methylmalonyl-CoA mutase, large subunit
830	 64.62	0	895750..895944	+	64	167644803	-	Caul_0837	-	hypothetical protein
831	 66.41	0	895941..896336	+	131	167644804	-	Caul_0838	-	PilT domain-containing protein
832	 53.07	-2	896380..897225	-	281	167644805	-	Caul_0839	-	hypothetical protein
833	 67.83	0	897256..898116	-	286	167644806	-	Caul_0840	-	integrase catalytic region
834	 66.98	0	898113..898427	-	104	167644807	-	Caul_0841	-	transposase IS3/IS911 family protein
835	 57.36	-2	898455..898712	-	85	167644808	-	Caul_0842	-	hypothetical protein
836	 67.02	0	898834..899118	-	94	167644809	-	Caul_0843	-	plasmid stabilization system protein
837	 67.35	0	899115..899408	-	97	167644810	-	Caul_0844	-	hypothetical protein
838	 70.45	0	899533..899823	+	96	167644811	-	Caul_0845	-	DNA polymerase beta subunit
839	 63.19	-1	899816..900160	+	114	167644812	-	Caul_0846	-	hypothetical protein
840	 73.71	+1	900157..901533	-	458	167644813	-	Caul_0847	-	major facilitator transporter
841	 70.92	0	901657..902409	+	250	167644814	-	Caul_0848	-	extensin family protein
842	 65.22	0	902419..902901	-	160	167644815	-	Caul_0849	-	activator of Hsp90 ATPase 1 family protein
843	 63.25	-1	902984..903451	-	155	167644816	-	Caul_0850	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
844	 67.32	0	903606..904370	+	254	167644817	-	Caul_0851	-	short-chain dehydrogenase/reductase SDR
845	 69.26	0	904702..907281	+	859	167644818	-	Caul_0852	-	integral membrane sensor hybrid histidine kinase
846	 61.31	-1	907333..907743	+	136	167644819	-	Caul_0853	-	hypothetical protein
847	 69.52	0	907828..908283	-	151	167644820	-	Caul_0854	-	BadM/Rrf2 family transcriptional regulator
848	 69.04	0	908406..909080	+	224	167644821	-	Caul_0855	-	hypothetical protein
849	 68.54	0	909121..910350	+	409	167644822	-	Caul_0856	-	nitric oxide dioxygenase
850	 70.92	0	910462..911613	-	383	167644823	-	Caul_0857	-	hypothetical protein
851	 68.73	0	911774..913372	+	532	167644824	-	Caul_0858	-	transporter, putative
852	 71.96	+1	913372..914448	+	358	167644825	-	Caul_0859	-	secretion protein HlyD family protein
853	 61.63	-1	914524..914781	+	85	167644826	-	Caul_0860	-	transglycosylase-associated protein
854	 64.98	0	914923..916755	-	610	167644827	-	Caul_0861	-	GTP-binding protein TypA
855	 72.19	+1	917300..918259	-	319	167644828	-	Caul_0862	-	N-formylglutamate amidohydrolase
856	 70.03	0	918438..918794	+	118	167644829	-	Caul_0863	-	response regulator receiver protein
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.