IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
642	 66.74	0	715283..716665	-	460	167644615	-	Caul_0647	-	flavin-containing monooxygenase FMO
643	 73.79	+1	716756..717064	-	102	167644616	-	Caul_0648	-	hypothetical protein
644	 72.41	+1	717234..718139	-	301	167644617	-	Caul_0649	-	LysR family transcriptional regulator
645	 70.81	0	718229..719242	+	337	167644618	-	Caul_0650	-	NAD-dependent epimerase/dehydratase
646	 63.77	-1	719373..720131	-	252	167644619	-	Caul_0651	-	hypothetical protein
647	 65.04	0	720298..720666	+	122	167644620	-	Caul_0652	-	RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
648	 68.33	0	720671..720970	+	99	167644621	-	Caul_0653	-	XRE family transcriptional regulator
649	 71.56	0	721018..722406	-	462	167644622	-	Caul_0654	-	L-serine dehydratase 1
650	 67.57	0	722576..724228	-	550	167644623	-	Caul_0655	-	peptidase M28
651	 70.76	0	724414..725391	-	325	167644624	-	Caul_0656	-	pyridoxal-5'-phosphate-dependent protein beta subunit
652	 65.85	0	725491..726099	+	202	167644625	-	Caul_0657	-	hypothetical protein
653	 67.91	0	726220..727506	+	428	167644626	-	Caul_0658	-	adenylosuccinate synthetase
654	 70.34	0	727609..729321	+	570	167644627	-	Caul_0659	-	integral membrane sensor hybrid histidine kinase
655	 66.50	0	729346..730521	+	391	167644628	-	Caul_0660	-	hypothetical protein
656	 70.44	0	730611..731405	+	264	167644629	-	Caul_0661	-	response regulator receiver protein
657	 63.29	-1	731489..732376	-	295	167644630	-	Caul_0662	-	RNA polymerase factor sigma-32
658	 58.16	-2	732367..732648	-	93	167644631	-	Caul_0663	-	hypothetical protein
659	 68.35	0	732683..733039	+	118	167644632	-	Caul_0664	-	membrane protein of unknown function
660	 72.24	+1	733069..733803	-	244	167644633	-	Caul_0665	-	tetratricopeptide TPR_4
661	 67.62	0	733873..734499	-	208	167644634	-	Caul_0666	-	peptidyl-tRNA hydrolase
662	 64.33	0	734717..735316	-	199	167644635	-	Caul_0667	-	ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
663	 63.29	-1	735503..736006	-	167	167644636	-	Caul_0668	-	transposase and inactivated derivatives-like protein
664	 65.88	0	736068..736448	-	126	167644637	-	Caul_0669	-	putative transposase of insertion sequence ISRm2011-2, orfA protein
665	 71.57	0	736536..737636	-	366	167644638	-	Caul_0670	-	hypothetical protein
666	 66.77	0	737782..738720	-	312	167644639	-	Caul_0671	-	ribose-phosphate pyrophosphokinase
667	 71.76	+1	738822..739607	-	261	167644640	-	Caul_0672	-	hypothetical protein
668	 70.64	0	739604..740812	-	402	167644641	-	Caul_0673	-	hypothetical protein
669	 66.45	0	740799..741707	-	302	167644642	-	Caul_0674	-	prolipoprotein diacylglyceryl transferase
670	 68.91	0	741823..742089	+	88	167644643	-	Caul_0675	-	hypothetical protein
671	 66.47	0	742216..742722	+	168	167644644	-	Caul_0676	-	hypothetical protein
672	 73.18	+1	742905..743687	+	260	167644645	-	Caul_0677	-	pyrroline-5-carboxylate reductase
673	 71.85	+1	743719..744297	+	192	167644646	-	Caul_0678	-	TetR family transcriptional regulator
674	 67.86	0	744376..745716	-	446	167644647	-	Caul_0679	-	hypothetical protein
675	 70.40	0	745862..746959	+	365	167644648	-	Caul_0680	-	beta-lactamase domain-containing protein
676	 66.29	0	746997..747530	-	177	167644649	-	Caul_0681	-	activator of Hsp90 ATPase 1 family protein
677	 65.85	0	747527..747895	-	122	167644650	-	Caul_0682	-	ArsR family transcriptional regulator
678	 69.61	0	748008..748448	+	146	167644651	-	Caul_0683	-	MarR family transcriptional regulator
679	 70.56	0	748445..749215	+	256	167644652	-	Caul_0684	-	enoyl-CoA hydratase/isomerase
680	 73.19	+1	749217..749630	+	137	167644653	-	Caul_0685	-	hypothetical protein
681	 69.23	0	749666..750640	+	324	167644654	-	Caul_0686	-	oxidoreductase
682	 70.11	0	750637..751158	+	173	167644655	-	Caul_0687	-	hypothetical protein
683	 67.83	0	751155..752012	+	285	167644656	-	Caul_0688	-	short chain dehydrogenase
684	 69.35	0	752157..752417	-	86	167644657	-	Caul_0689	-	TfoX domain-containing protein
685	 66.04	0	752491..752970	+	159	167644658	-	Caul_0690	-	GCN5-related N-acetyltransferase
686	 70.32	0	753120..754406	-	428	167644659	-	Caul_0691	-	major facilitator transporter
687	 73.60	+1	754673..755206	+	177	167644660	-	Caul_0692	-	GCN5-related N-acetyltransferase
688	 69.53	0	755261..755854	+	197	167644661	-	Caul_0693	-	hypothetical protein
689	 70.23	0	755851..756495	+	214	167644662	-	Caul_0694	-	NUDIX hydrolase
690	 69.62	0	756610..757863	+	417	167644663	-	Caul_0695	-	polynucleotide adenylyltransferase region
691	 70.40	0	758224..758919	+	231	167644664	-	Caul_0696	-	glutamine amidotransferase class-I
692	 73.61	+1	758979..759626	+	215	167644665	-	Caul_0697	-	hypothetical protein
693	 70.90	0	759631..760386	-	251	167644666	-	Caul_0698	-	abortive infection protein
694	 66.09	0	760383..761255	-	290	167644667	-	Caul_0699	-	coproporphyrinogen III oxidase
695	 65.18	0	761307..761777	-	156	167644668	-	Caul_0700	-	tRNA/rRNA methyltransferase (SpoU)
696	 67.20	0	761974..762534	+	186	167644669	-	Caul_0701	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
697	 64.17	0	762540..763859	+	439	167644670	-	Caul_0702	-	cytochrome b/b6 domain-containing protein
698	 66.43	0	763865..764719	+	284	167644671	-	Caul_0703	-	cytochrome c1
699	 74.21	+1	764757..765551	-	264	167644672	-	Caul_0704	-	hypothetical protein
700	 71.35	0	765667..766350	-	227	167644673	-	Caul_0705	-	dienelactone hydrolase
701	 70.19	0	766356..767036	-	226	167644674	-	Caul_0706	-	dienelactone hydrolase
702	 70.95	0	767062..767598	-	178	167644675	-	Caul_0707	-	hypothetical protein
703	 66.67	0	767603..768703	-	366	167644676	-	Caul_0708	-	translation-associated GTPase
704	 66.67	0	768955..769194	-	79	167644677	-	Caul_0709	-	hypothetical protein
705	 70.46	0	769298..770404	-	368	167644678	-	Caul_0710	-	hypothetical protein
706	 65.67	0	770494..771501	-	335	167644679	-	Caul_0711	-	cobalt chelatase, pCobS small subunit
707	 67.42	0	771633..772031	-	132	167644680	-	Caul_0712	-	putative secreted protein
708	 72.03	+1	772252..773016	+	254	167644681	-	Caul_0713	-	phosphoesterase PA-phosphatase related
709	 67.59	0	773030..773680	-	216	167644682	-	Caul_0714	-	heat shock protein DnaJ domain-containing protein
710	 69.23	0	773740..774012	+	90	167644683	-	Caul_0715	-	BolA family protein
711	 71.56	0	774118..774546	+	142	167644684	-	Caul_0716	-	cytidine deaminase
712	 69.65	0	774725..775093	-	122	167644685	-	Caul_0717	-	response regulator receiver protein
713	 68.76	0	775353..776639	-	428	167644686	-	Caul_0718	-	hypothetical protein
714	 65.56	0	776923..777285	+	120	167644687	-	Caul_0719	-	response regulator receiver protein
715	 67.31	0	777436..780084	+	882	167644688	-	Caul_0720	-	multi-sensor hybrid histidine kinase
716	 70.54	0	780163..781272	-	369	167644689	-	Caul_0721	-	3-dehydroquinate synthase
717	 71.52	0	781269..781865	-	198	167644690	-	Caul_0722	-	shikimate kinase
718	 76.36	+2	781987..783462	+	491	167644691	-	Caul_0723	-	hypothetical protein
719	 71.63	0	783488..784414	+	308	167644692	-	Caul_0724	-	integrase family protein
720	 62.61	-1	784579..784800	+	73	167644693	-	Caul_0725	-	PhnA protein
721	 64.38	0	784853..785332	-	159	167644694	-	Caul_0726	-	3-demethylubiquinone-9 3-methyltransferase
722	 69.63	0	785495..786643	+	382	167644695	-	Caul_0727	-	aminotransferase class I and II
723	 68.76	0	786838..787839	+	333	167644696	-	Caul_0728	-	aldo/keto reductase
724	 67.62	0	789041..790090	+	349	167644697	-	Caul_0731	-	HpcH/HpaI aldolase
725	 72.71	+1	790234..790647	-	137	167644698	-	Caul_0732	-	OsmC family protein
726	 69.78	0	790842..791066	-	74	167644699	-	Caul_0733	-	hypothetical protein
727	 68.85	0	791326..792288	+	320	167644700	-	Caul_0734	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
728	 69.38	0	792368..792625	+	85	167644701	-	Caul_0735	-	prevent-host-death family protein
729	 68.50	0	792622..793002	+	126	167644702	-	Caul_0736	-	PilT domain-containing protein
730	 68.97	0	793093..793527	+	144	167644703	-	Caul_0737	-	alkylhydroperoxidase
731	 69.12	0	793799..794776	+	325	167644704	-	Caul_0738	-	2-nitropropane dioxygenase NPD
732	 69.20	0	794929..797136	+	735	167644705	-	Caul_0739	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
733	 69.70	0	797229..797657	+	142	167644706	-	Caul_0740	-	resolvase domain-containing protein
734	 71.20	0	797823..798947	+	374	167644707	-	Caul_0741	-	NADH:flavin oxidoreductase/NADH oxidase
735	 72.35	+1	799045..800064	-	339	167644708	-	Caul_0742	-	threonine aldolase
736	 67.94	0	800279..801379	-	366	167644709	-	Caul_0743	-	alcohol dehydrogenase
737	 69.44	0	801568..802035	-	155	167644710	-	Caul_0744	-	CheW protein
738	 68.76	0	802266..802694	+	142	167644711	-	Caul_0745	-	hypothetical protein
739	 68.54	0	802756..803556	-	266	167644712	-	Caul_0746	-	inositol-phosphate phosphatase
740	 70.74	0	803927..804319	+	130	167644713	-	Caul_0747	-	hypothetical protein
741	 69.67	0	804316..805182	+	288	167644714	-	Caul_0748	-	RNA polymerase sigma factor SigJ
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.