IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
561	 68.46	0	615348..616853	-	501	167644534	-	Caul_0566	-	integrase catalytic region
562	 60.36	-1	616905..617126	-	73	167644535	-	Caul_0567	-	hypothetical protein
563	 63.98	0	617676..618158	-	160	167644536	-	Caul_0568	-	hypothetical protein
564	 68.82	0	618326..618418	+	30	167644537	-	Caul_0569	-	hypothetical protein
565	 61.35	-1	618488..619804	-	438	167644538	-	Caul_0570	-	beta-lactamase
566	 64.46	0	620098..621318	-	406	167644539	-	Caul_0571	-	beta-lactamase
567	 59.95	-2	621332..623608	-	758	167644540	-	Caul_0572	-	TonB-dependent receptor
568	 64.88	0	623795..624577	-	260	167644541	-	Caul_0573	-	short-chain dehydrogenase/reductase SDR
569	 63.36	-1	624677..625582	+	301	167644542	-	Caul_0574	-	LysR family transcriptional regulator
570	 64.95	0	625900..626715	-	271	167644543	-	Caul_0575	-	shikimate dehydrogenase substrate binding subunit
571	 63.06	-1	626940..628076	-	378	167644544	-	Caul_0576	-	hypothetical protein
572	 64.91	0	628301..629041	-	246	167644545	-	Caul_0577	-	short-chain dehydrogenase/reductase SDR
573	 64.45	0	629193..630005	+	270	167644546	-	Caul_0578	-	IclR family transcriptional regulator
574	 63.73	-1	630437..632002	+	521	167644547	-	Caul_0579	-	AMP-dependent synthetase and ligase
575	 63.34	-1	632054..633496	-	480	167644548	-	Caul_0580	-	succinic semialdehyde dehydrogenase
576	 61.62	-1	633516..634763	-	415	167644549	-	Caul_0581	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
577	 63.64	-1	634781..636925	-	714	167644550	-	Caul_0582	-	dehydrogenase E1 component
578	 62.88	-1	637112..638512	-	466	167644551	-	Caul_0583	-	citrate transporter
579	 67.11	0	638674..640257	-	527	167644552	-	Caul_0584	-	carboxylesterase type B
580	 66.97	0	640273..641901	-	542	167644553	-	Caul_0585	-	major facilitator transporter
581	 59.19	-2	641898..642218	-	106	167644554	-	Caul_0586	-	NIPSNAP family protein
582	 66.81	0	642215..644257	-	680	167644555	-	Caul_0587	-	dehydrogenase E1 component
583	 61.37	-1	644893..645723	-	276	167644556	-	Caul_0588	-	TetR family transcriptional regulator
584	 63.63	-1	646375..647691	+	438	167644557	-	Caul_0589	-	beta-lactamase
585	 64.90	0	648327..649685	+	452	167644558	-	Caul_0590	-	beta-lactamase
586	 62.73	-1	650054..653152	+	1032	167644559	-	Caul_0591	-	TonB-dependent receptor
587	 63.76	-1	653273..654202	+	309	167644560	-	Caul_0592	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
588	 63.77	-1	654195..655853	+	552	167644561	-	Caul_0593	-	feruloyl esterase
589	 60.34	-1	656144..656380	-	78	167644562	-	Caul_0594	-	transposase, IS4
590	 68.23	0	656533..657108	+	191	167644563	-	Caul_0595	-	protein tyrosine phosphatase-like protein
591	 62.73	-1	657118..658665	-	515	167644564	-	Caul_0596	-	integrase family protein
592	 58.90	-2	659079..659387	+	102	167644565	-	Caul_0597	-	hypothetical protein
593	 59.79	-2	660200..661522	+	440	167644566	-	Caul_0598	-	DNA-cytosine methyltransferase
594	 54.07	-2	661526..662605	+	359	167644567	-	Caul_0599	-	hypothetical protein
595	 47.31	-2	662618..663118	-	166	167644568	-	Caul_0600	-	hypothetical protein
596	 49.11	-2	663118..664245	-	375	167644569	-	Caul_0601	-	hypothetical protein
597	 53.24	-2	664446..665294	+	282	167644570	-	Caul_0602	-	cobyrinic acid ac-diamide synthase
598	 61.60	-1	666626..666862	-	78	167644571	-	Caul_0603	-	XRE family transcriptional regulator
599	 65.32	0	666994..667512	+	172	167644572	-	Caul_0604	-	hypothetical protein
600	 64.68	0	667549..667800	+	83	167644573	-	Caul_0605	-	hypothetical protein
601	 67.98	0	667789..669306	-	505	167644574	-	Caul_0606	-	hypothetical protein
602	 62.03	-1	670289..670762	-	157	167644575	-	Caul_0607	-	resolvase domain-containing protein
603	 68.53	0	671152..672333	+	393	167644576	-	Caul_0608	-	two component transcriptional regulator
604	 68.50	0	672419..672799	+	126	167644577	-	Caul_0609	-	hypothetical protein
605	 66.67	0	673277..673603	+	108	167644578	-	Caul_0610	-	sulfate transporter/antisigma-factor antagonist STAS
606	 66.12	0	673600..673965	+	121	167644579	-	Caul_0611	-	response regulator receiver protein
607	 69.98	0	673962..675920	+	652	167644580	-	Caul_0612	-	CheA signal transduction histidine kinase
608	 66.48	0	675920..676447	+	175	167644581	-	Caul_0613	-	CheW protein
609	 67.86	0	676464..678146	+	560	167644582	-	Caul_0614	-	methyl-accepting chemotaxis sensory transducer
610	 68.33	0	678195..679994	+	599	167644583	-	Caul_0615	-	methyl-accepting chemotaxis sensory transducer
611	 68.50	0	679994..680485	+	163	167644584	-	Caul_0616	-	CheW protein
612	 64.45	0	680528..681385	+	285	167644585	-	Caul_0617	-	MCP methyltransferase, CheR-type
613	 69.98	0	681390..682505	+	371	167644586	-	Caul_0618	-	response regulator receiver modulated CheB methylesterase
614	 71.26	0	682588..684327	-	579	167644587	-	Caul_0619	-	hypothetical protein
615	 69.20	0	684376..686313	-	645	167644588	-	Caul_0620	-	PAS/PAC sensor hybrid histidine kinase
616	 68.86	0	686521..687159	-	212	167644589	-	Caul_0621	-	two component LuxR family transcriptional regulator
617	 68.90	0	687161..690202	-	1013	167644590	-	Caul_0622	-	histidine kinase
618	 72.88	+1	690364..690717	+	117	167644591	-	Caul_0623	-	hypothetical protein
619	 71.33	0	690822..691721	+	299	167644592	-	Caul_0624	-	AraC family transcriptional regulator
620	 69.99	0	691725..692747	-	340	167644593	-	Caul_0625	-	gluconolactonase
621	 71.53	0	693630..694781	-	383	167644594	-	Caul_0626	-	L-carnitine dehydratase/bile acid-inducible protein F
622	 70.27	0	694778..695941	-	387	167644595	-	Caul_0627	-	L-carnitine dehydratase/bile acid-inducible protein F
623	 72.32	+1	696090..696938	+	282	167644596	-	Caul_0628	-	aldose 1-epimerase
624	 71.60	0	697169..697816	-	215	167644597	-	Caul_0629	-	transcriptional regulator FixK
625	 70.41	0	697952..698566	-	204	167644598	-	Caul_0630	-	response regulator FixJ
626	 70.58	0	698559..700064	-	501	167644599	-	Caul_0631	-	multi-sensor signal transduction histidine kinase
627	 75.36	+1	700071..701783	-	570	167644600	-	Caul_0632	-	ABC transporter related
628	 76.28	+2	701780..703423	-	547	167644601	-	Caul_0633	-	cysteine ABC transporter permease/ATP-binding protein
629	 65.15	0	703547..705127	+	526	167644602	-	Caul_0634	-	cytochrome bd ubiquinol oxidase subunit I
630	 68.76	0	705140..706285	+	381	167644603	-	Caul_0635	-	cytochrome d ubiquinol oxidase, subunit II
631	 59.35	-2	706298..706420	+	40	167644604	-	Caul_0636	-	cyd operon protein YbgT
632	 67.11	0	706750..707202	+	150	167644605	-	Caul_0637	-	CheW protein
633	 68.88	0	707426..707923	-	165	167644606	-	Caul_0638	-	hypothetical protein
634	 67.75	0	708164..708808	-	214	167644607	-	Caul_0639	-	GTPase EngB
635	 64.45	0	708808..710700	-	630	167644608	-	Caul_0640	-	putative inner membrane protein translocase component YidC
636	 67.11	0	710708..711154	-	148	167644609	-	Caul_0641	-	ribonuclease P protein component
637	 68.15	0	711271..711405	-	44	167644610	-	Caul_0642	-	ribosomal protein L34
638	 67.22	0	711588..712130	+	180	167644611	-	Caul_0643	-	hypothetical protein
639	 71.49	0	712127..713122	-	331	167644612	-	Caul_0644	-	alcohol dehydrogenase
640	 71.90	+1	713267..714316	-	349	167644613	-	Caul_0645	-	alpha/beta hydrolase domain-containing protein
641	 69.16	0	714434..715075	-	213	167644614	-	Caul_0646	-	TetR family transcriptional regulator
642	 66.74	0	715283..716665	-	460	167644615	-	Caul_0647	-	flavin-containing monooxygenase FMO
643	 73.79	+1	716756..717064	-	102	167644616	-	Caul_0648	-	hypothetical protein
644	 72.41	+1	717234..718139	-	301	167644617	-	Caul_0649	-	LysR family transcriptional regulator
645	 70.81	0	718229..719242	+	337	167644618	-	Caul_0650	-	NAD-dependent epimerase/dehydratase
646	 63.77	-1	719373..720131	-	252	167644619	-	Caul_0651	-	hypothetical protein
647	 65.04	0	720298..720666	+	122	167644620	-	Caul_0652	-	RelE-like cytotoxic translational repressor of toxin-antitoxin stability system
648	 68.33	0	720671..720970	+	99	167644621	-	Caul_0653	-	XRE family transcriptional regulator
649	 71.56	0	721018..722406	-	462	167644622	-	Caul_0654	-	L-serine dehydratase 1
650	 67.57	0	722576..724228	-	550	167644623	-	Caul_0655	-	peptidase M28
651	 70.76	0	724414..725391	-	325	167644624	-	Caul_0656	-	pyridoxal-5'-phosphate-dependent protein beta subunit
652	 65.85	0	725491..726099	+	202	167644625	-	Caul_0657	-	hypothetical protein
653	 67.91	0	726220..727506	+	428	167644626	-	Caul_0658	-	adenylosuccinate synthetase
654	 70.34	0	727609..729321	+	570	167644627	-	Caul_0659	-	integral membrane sensor hybrid histidine kinase
655	 66.50	0	729346..730521	+	391	167644628	-	Caul_0660	-	hypothetical protein
656	 70.44	0	730611..731405	+	264	167644629	-	Caul_0661	-	response regulator receiver protein
657	 63.29	-1	731489..732376	-	295	167644630	-	Caul_0662	-	RNA polymerase factor sigma-32
658	 58.16	-2	732367..732648	-	93	167644631	-	Caul_0663	-	hypothetical protein
659	 68.35	0	732683..733039	+	118	167644632	-	Caul_0664	-	membrane protein of unknown function
660	 72.24	+1	733069..733803	-	244	167644633	-	Caul_0665	-	tetratricopeptide TPR_4
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.