IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4225	 68.65	0	4609791..4611860	-	689	167648198	-	Caul_4241	-	K+-transporting ATPase, B subunit
4226	 67.84	0	4611880..4613589	-	569	167648199	-	Caul_4242	-	potassium-transporting ATPase subunit A
4227	 64.78	0	4613692..4614009	-	105	167648200	-	Caul_4243	-	hypothetical protein
4228	 60.21	-1	4614775..4615161	-	128	167648201	-	Caul_4244	-	transposase IS4 family protein
4229	 63.14	-1	4615158..4615526	-	122	167648202	-	Caul_4245	-	transposase and inactivated derivative
4230	 66.17	0	4615650..4617269	-	539	167648203	-	Caul_4246	-	hemolysin-type calcium-binding region
4231	 55.21	-2	4618176..4618463	-	95	167648204	-	Caul_4248	-	hypothetical protein
4232	 66.67	0	4618500..4618814	+	104	167648205	-	Caul_4249	-	transposase IS3/IS911 family protein
4233	 67.71	0	4618811..4619671	+	286	167648206	-	Caul_4250	-	integrase catalytic region
4234	 66.46	0	4619932..4620408	-	158	167648207	-	Caul_4251	-	activator of Hsp90 ATPase 1 family protein
4235	 65.81	0	4620401..4620751	-	116	167648208	-	Caul_4252	-	ArsR family transcriptional regulator
4236	 67.24	0	4620942..4623227	+	761	167648209	-	Caul_4253	-	excinuclease ABC subunit B
4237	 72.52	+1	4623565..4623957	+	130	167648210	-	Caul_4254	-	hypothetical protein
4238	 48.90	-2	4624046..4625722	+	558	167648211	-	Caul_4255	-	hypothetical protein
4239	 69.13	0	4627212..4627820	-	202	167648212	-	Caul_4256	-	hypothetical protein
4240	 74.22	+1	4627910..4628425	+	171	167648213	-	Caul_4257	-	hypothetical protein
4241	 74.12	+1	4628485..4629021	+	178	167648214	-	Caul_4258	-	hypothetical protein
4242	 70.19	0	4629152..4629463	+	103	167648215	-	Caul_4259	-	hypothetical protein
4243	 70.18	0	4629529..4630611	+	360	167648216	-	Caul_4260	-	glycerophosphoryl diester phosphodiesterase
4244	 69.96	0	4630673..4631734	-	353	167648217	-	Caul_4261	-	hypothetical protein
4245	 70.01	0	4631931..4632827	+	298	167648218	-	Caul_4262	-	hypothetical protein
4246	 70.98	0	4633112..4635037	+	641	167648219	-	Caul_4263	-	DNA primase
4247	 58.68	-2	4635219..4635506	-	95	167648220	-	Caul_4264	-	excinuclease ABC subunit C
4248	 64.67	0	4636092..4638041	+	649	167648221	-	Caul_4265	-	RNA polymerase sigma factor RpoD
4249	 77.30	+2	4638181..4639026	-	281	167648222	-	Caul_4266	-	hypothetical protein
4250	 75.04	+1	4639121..4640410	-	429	167648223	-	Caul_4267	-	peptidase S8 and S53 subtilisin kexin sedolisin
4251	 69.46	0	4640542..4641042	+	166	167648224	-	Caul_4268	-	ECF subfamily RNA polymerase sigma-24 factor
4252	 74.76	+1	4641039..4641866	+	275	167648225	-	Caul_4269	-	putative transmembrane anti-sigma factor
4253	 65.38	0	4641951..4642184	-	77	167648226	-	Caul_4270	-	hypothetical protein
4254	 73.63	+1	4642343..4642543	-	66	167648227	-	Caul_4271	-	hypothetical protein
4255	 67.87	0	4642819..4644477	+	552	167648228	-	Caul_4272	-	peptidase M28
4256	 71.82	+1	4644573..4645232	+	219	167648229	-	Caul_4273	-	hypothetical protein
4257	 65.72	0	4645297..4645929	-	210	167648230	-	Caul_4274	-	hypothetical protein
4258	 59.60	-2	4645978..4646274	+	98	167648231	-	Caul_4275	-	hypothetical protein
4259	 58.06	-2	4646271..4646549	+	92	167648232	-	Caul_4276	-	plasmid stabilization system protein
4260	 67.87	0	4646569..4648473	+	634	167648233	-	Caul_4277	-	excinuclease ABC subunit C
4261	 70.87	0	4648596..4649762	-	388	167648234	-	Caul_4278	-	saccharopine dehydrogenase
4262	 70.80	0	4649886..4651166	-	426	167648235	-	Caul_4279	-	major facilitator transporter
4263	 62.27	-1	4651408..4652454	+	348	167648236	-	Caul_4280	-	TonB family protein
4264	 67.64	0	4652488..4653105	+	205	167648237	-	Caul_4281	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
4265	 71.25	0	4653505..4653744	-	79	167648238	-	Caul_4282	-	hypothetical protein
4266	 62.32	-1	4654054..4654260	+	68	167648239	-	Caul_4283	-	cold-shock DNA-binding domain-containing protein
4267	 71.93	+1	4654453..4655649	+	398	167648240	-	Caul_4284	-	patatin
4268	 67.66	0	4655976..4659293	+	1105	167648241	-	Caul_4285	-	carbamoyl phosphate synthase large subunit
4269	 73.48	+1	4659590..4659985	+	131	167648242	-	Caul_4286	-	hypothetical protein
4270	 71.35	0	4660164..4661039	-	291	167648243	-	Caul_4287	-	restriction endonuclease
4271	 69.98	0	4664272..4664724	+	150	167648244	-	Caul_4289	-	hypothetical protein
4272	 68.17	0	4664804..4665466	+	220	167648245	-	Caul_4290	-	glutathione S-transferase domain-containing protein
4273	 78.84	+2	4665618..4665962	+	114	167648246	-	Caul_4291	-	hypothetical protein
4274	 71.89	+1	4665962..4667569	+	535	167648247	-	Caul_4292	-	methyl-accepting chemotaxis sensory transducer
4275	 64.14	0	4667716..4668189	+	157	167648248	-	Caul_4293	-	transcription elongation factor GreA
4276	 71.85	+1	4668262..4669632	+	456	167648249	-	Caul_4294	-	hypothetical protein
4277	 65.85	0	4669662..4670393	+	243	167648250	-	Caul_4295	-	hypothetical protein
4278	 67.62	0	4670550..4670759	+	69	167648251	-	Caul_4296	-	hypothetical protein
4279	 64.58	0	4670762..4670857	+	31	167648252	-	Caul_4297	-	hypothetical protein
4280	 74.51	+1	4670878..4671591	+	237	167648253	-	Caul_4298	-	acylneuraminate cytidylyltransferase
4281	 74.16	+1	4671764..4672804	+	346	167648254	-	Caul_4299	-	flagellin modification protein FlmD
4282	 71.45	0	4673047..4673904	+	285	167648255	-	Caul_4300	-	short-chain dehydrogenase/reductase SDR
4283	 73.53	+1	4674298..4675404	+	368	167648256	-	Caul_4301	-	PHB depolymerase family esterase
4284	 64.92	0	4675532..4676047	+	171	167648257	-	Caul_4302	-	hemerythrin HHE cation binding domain-containing protein
4285	 70.17	0	4676064..4677149	-	361	167648258	-	Caul_4303	-	N-acetylneuraminate synthase
4286	 67.56	0	4677383..4678390	+	335	167648259	-	Caul_4304	-	thioredoxin reductase
4287	 72.40	+1	4678398..4679636	-	412	167648260	-	Caul_4305	-	cell wall hydrolase SleB
4288	 65.83	0	4679653..4680132	-	159	167648261	-	Caul_4306	-	Ferritin Dps family protein
4289	 71.62	0	4680208..4682628	+	806	167648262	-	Caul_4307	-	multi-sensor hybrid histidine kinase
4290	 67.49	0	4682908..4684005	+	365	167648263	-	Caul_4308	-	quinolinate synthetase
4291	 77.12	+2	4684167..4685687	+	506	167648264	-	Caul_4309	-	L-aspartate oxidase
4292	 59.76	-2	4685717..4686310	+	197	167648265	-	Caul_4310	-	hypothetical protein
4293	 72.14	+1	4686307..4687164	+	285	167648266	-	Caul_4311	-	nicotinate-nucleotide pyrophosphorylase
4294	 62.46	-1	4687295..4687888	+	197	167648267	-	Caul_4312	-	response regulator receiver protein
4295	 67.08	0	4687885..4688364	+	159	167648268	-	Caul_4313	-	hypothetical protein
4296	 69.79	0	4688424..4689608	-	394	167648269	-	Caul_4314	-	acyltransferase 3
4297	 71.71	+1	4689841..4690614	+	257	167648270	-	Caul_4315	-	extradiol ring-cleavage dioxygenase class III protein subunit B
4298	 70.57	0	4690668..4691384	+	238	167648271	-	Caul_4316	-	glutathione S-transferase-like protein
4299	 67.80	0	4691706..4692146	-	146	167648272	-	Caul_4317	-	hypothetical protein
4300	 72.39	+1	4692313..4693011	-	232	167648273	-	Caul_4318	-	ThiJ/PfpI domain-containing protein
4301	 74.56	+1	4693100..4694074	+	324	167648274	-	Caul_4319	-	AraC family transcriptional regulator
4302	 66.67	0	4694129..4694704	-	191	167648275	-	Caul_4320	-	hypothetical protein
4303	 57.22	-2	4694852..4695031	+	59	167648276	-	Caul_4321	-	hypothetical protein
4304	 69.75	0	4695225..4696034	+	269	167648277	-	Caul_4322	-	short chain dehydrogenase
4305	 71.99	+1	4695994..4697121	-	375	167648278	-	Caul_4323	-	cell wall hydrolase SleB
4306	 70.77	0	4697652..4698674	-	340	167648279	-	Caul_4324	-	hypothetical protein
4307	 66.36	0	4698690..4699019	-	109	167648280	-	Caul_4325	-	PadR-like family transcriptional regulator
4308	 69.80	0	4699157..4700719	+	520	167648281	-	Caul_4326	-	tetratricopeptide TPR_4
4309	 69.68	0	4701048..4701479	-	143	167648282	-	Caul_4327	-	AsnC family transcriptional regulator
4310	 73.11	+1	4701593..4703020	+	475	167648283	-	Caul_4328	-	D-lactate dehydrogenase (cytochrome)
4311	 70.29	0	4703104..4704123	+	339	167648284	-	Caul_4329	-	hypothetical protein
4312	 65.89	0	4704139..4704522	-	127	167648285	-	Caul_4330	-	response regulator receiver protein
4313	 65.38	0	4704519..4706156	-	545	167648286	-	Caul_4331	-	signal transduction histidine kinase
4314	 68.33	0	4706731..4707330	-	199	167648287	-	Caul_4332	-	flavoprotein WrbA
4315	 66.52	0	4707394..4708092	-	232	167648288	-	Caul_4333	-	pirin domain-containing protein
4316	 69.75	0	4708297..4709205	+	302	167648289	-	Caul_4334	-	LysR family transcriptional regulator
4317	 64.30	0	4709212..4709928	-	238	167648290	-	Caul_4335	-	hypothetical protein
4318	 64.29	0	4710030..4710155	-	41	167648291	-	Caul_4336	-	hypothetical protein
4319	 70.01	0	4710284..4711720	-	478	167648292	-	Caul_4337	-	hypothetical protein
4320	 66.55	0	4711993..4714587	+	864	167648293	-	Caul_4338	-	TonB-dependent receptor
4321	 73.57	+1	4714758..4717205	+	815	167648294	-	Caul_4339	-	peptidase M28
4322	 70.26	0	4717292..4719154	-	620	167648295	-	Caul_4340	-	acyl-CoA synthetase
4323	 67.78	0	4719436..4720875	-	479	167648296	-	Caul_4341	-	aldehyde dehydrogenase
4324	 69.85	0	4720987..4721457	-	156	167648297	-	Caul_4342	-	NUDIX hydrolase
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.