IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4090	 68.08	0	4458525..4458950	+	141	167648063	-	Caul_4104	-	hypothetical protein
4091	 67.68	0	4459107..4459796	-	229	167648064	-	Caul_4105	-	hypothetical protein
4092	 69.37	0	4459880..4462282	-	800	167648065	-	Caul_4106	-	filamentous haemagglutinin outer membrane protein
4093	 68.95	0	4462335..4463999	-	554	167648066	-	Caul_4107	-	polypeptide-transport-associated domain-containing protein
4094	 67.74	0	4464748..4466052	+	434	167648067	-	Caul_4108	-	sodium:dicarboxylate symporter
4095	 69.78	0	4466173..4467327	+	384	167648068	-	Caul_4109	-	signal transduction histidine kinase
4096	 69.27	0	4467324..4467707	+	127	167648069	-	Caul_4110	-	response regulator receiver protein
4097	 66.37	0	4467778..4468110	-	110	167648070	-	Caul_4111	-	glutathione-dependent formaldehyde-activating GFA
4098	 64.52	0	4468264..4468776	-	170	167648071	-	Caul_4112	-	CarD family transcriptional regulator
4099	 58.19	-2	4469078..4469419	-	113	167648072	-	Caul_4113	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
4100	 68.21	0	4469664..4471742	+	692	167648073	-	Caul_4114	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
4101	 73.30	+1	4471843..4472445	+	200	167648074	-	Caul_4115	-	hypothetical protein
4102	 70.18	0	4472683..4473792	+	369	167648075	-	Caul_4116	-	beta-lactamase-like protein
4103	 74.00	+1	4474025..4474324	-	99	167648076	-	Caul_4117	-	RNA-binding S4 domain-containing protein
4104	 72.93	+1	4474321..4476876	-	851	167648077	-	Caul_4118	-	helicase domain-containing protein
4105	 60.26	-1	4477280..4477669	-	129	167648078	-	Caul_4119	-	hypothetical protein
4106	 55.56	-2	4478045..4478179	-	44	167648079	-	Caul_4120	-	transposase, IS4 family protein
4107	 63.48	-1	4478736..4479866	+	376	167648080	-	Caul_4121	-	acyltransferase 3
4108	 65.51	0	4479948..4480466	-	172	167648081	-	Caul_4122	-	hypothetical protein
4109	 71.25	0	4480603..4480842	+	79	167648082	-	Caul_4123	-	VapB family protein
4110	 68.99	0	4480839..4481225	+	128	167648083	-	Caul_4124	-	PilT domain-containing protein
4111	 71.80	+1	4481356..4482990	-	544	167648084	-	Caul_4125	-	amidohydrolase 3
4112	 72.60	+1	4483246..4483818	+	190	167648085	-	Caul_4126	-	methylated-DNA--protein-cysteine methyltransferase
4113	 68.90	0	4483973..4484419	-	148	167648086	-	Caul_4127	-	hypothetical protein
4114	 67.32	0	4484638..4484943	+	101	167648087	-	Caul_4128	-	ribosomal protein L28
4115	 70.62	0	4485152..4485505	+	117	167648088	-	Caul_4129	-	hypothetical protein
4116	 72.38	+1	4485508..4486224	+	238	167648089	-	Caul_4130	-	hypothetical protein
4117	 58.22	-2	4486243..4486467	-	74	167648090	-	Caul_4131	-	hypothetical protein
4118	 49.04	-2	4486776..4487297	-	173	167648091	-	Caul_4132	-	hypothetical protein
4119	 55.56	-2	4487294..4487527	-	77	167648092	-	Caul_4133	-	hypothetical protein
4120	 61.39	-1	4488096..4489100	-	334	167648093	-	Caul_4134	-	putative transposase
4121	 59.26	-2	4489267..4489563	+	98	167648094	-	Caul_4135	-	hypothetical protein
4122	 66.67	0	4489544..4489780	-	78	167648095	-	Caul_4136	-	XRE family transcriptional regulator
4123	 62.59	-1	4489840..4490403	+	187	167648096	-	Caul_4137	-	hypothetical protein
4124	 52.85	-2	4491471..4492295	+	274	167648097	-	Caul_4138	-	hypothetical protein
4125	 58.59	-2	4492938..4493234	-	98	167648098	-	Caul_4139	-	hypothetical protein
4126	 60.61	-1	4493578..4494039	-	153	167648099	-	Caul_4140	-	hypothetical protein
4127	 68.38	0	4494354..4494644	-	96	167648100	-	Caul_4141	-	hypothetical protein
4128	 67.00	0	4494986..4495285	-	99	167648101	-	Caul_4142	-	hypothetical protein
4129	 71.75	+1	4495611..4496672	-	353	167648102	-	Caul_4143	-	hypothetical protein
4130	 70.94	0	4496669..4498612	-	647	167648103	-	Caul_4144	-	cobalt chelatase, pCobT subunit
4131	 63.06	-1	4498689..4498910	+	73	167648104	-	Caul_4145	-	hypothetical protein
4132	 68.30	0	4499065..4500228	-	387	167648105	-	Caul_4146	-	hypothetical protein
4133	 72.38	+1	4500457..4500771	-	104	167648106	-	Caul_4147	-	hypothetical protein
4134	 62.79	-1	4500837..4500965	-	42	167648107	-	Caul_4148	-	hypothetical protein
4135	 64.53	0	4501094..4501327	-	77	167648108	-	Caul_4149	-	hypothetical protein
4136	 65.09	0	4501482..4503128	-	548	167648109	-	Caul_4150	-	chaperonin GroEL
4137	 61.51	-1	4503186..4503476	-	96	167648110	-	Caul_4151	-	co-chaperonin GroES
4138	 73.93	+1	4503698..4504096	+	132	167648111	-	Caul_4152	-	hypothetical protein
4139	 70.42	0	4504096..4504521	+	141	167648112	-	Caul_4153	-	glyoxalase/bleomycin resistance protein/dioxygenase
4140	 73.29	+1	4504544..4504996	+	150	167648113	-	Caul_4154	-	hypothetical protein
4141	 68.84	0	4505027..4505533	-	168	167648114	-	Caul_4155	-	hypothetical protein
4142	 72.69	+1	4505874..4506554	+	226	167648115	-	Caul_4156	-	peptidyl-prolyl cis-trans isomerase cyclophilin type
4143	 65.43	0	4507044..4508342	+	432	167648116	-	Caul_4157	-	integrase family protein
4144	 64.28	0	4508728..4512324	-	1198	167648117	-	Caul_4158	-	YD repeat-containing protein
4145	 69.68	0	4512321..4512851	-	176	167648118	-	Caul_4159	-	putative transposase
4146	 66.67	0	4512848..4513162	-	104	167648119	-	Caul_4160	-	transposase IS3/IS911 family protein
4147	 65.78	0	4513597..4514163	-	188	167648120	-	Caul_4161	-	RTX toxin-activating protein C
4148	 63.74	-1	4514164..4528227	-	4687	167648121	-	Caul_4162	-	outer membrane adhesin like proteiin
4149	 48.13	-2	4528224..4529000	-	258	167648122	-	Caul_4163	-	hypothetical protein
4150	 70.43	0	4528997..4530406	-	469	167648123	-	Caul_4164	-	HlyD family type I secretion membrane fusion protein
4151	 68.68	0	4530403..4532583	-	726	167648124	-	Caul_4165	-	type I secretion system ATPase
4152	 57.38	-2	4532986..4533459	-	157	167648125	-	Caul_4166	-	hypothetical protein
4153	 60.47	-1	4533468..4534193	-	241	167648126	-	Caul_4167	-	hypothetical protein
4154	 62.66	-1	4534338..4535036	-	232	167648127	-	Caul_4168	-	hypothetical protein
4155	 63.98	0	4535039..4535410	-	123	167648128	-	Caul_4169	-	hypothetical protein
4156	 55.46	-2	4536096..4536443	-	115	167648129	-	Caul_4170	-	hypothetical protein
4157	 60.83	-1	4536825..4537184	-	119	167648130	-	Caul_4171	-	hypothetical protein
4158	 66.67	0	4537364..4538092	-	242	167648131	-	Caul_4172	-	IstB ATP binding domain-containing protein
4159	 68.06	0	4538079..4539587	-	502	167648132	-	Caul_4173	-	integrase catalytic region
4160	 57.79	-2	4539670..4540401	-	243	167648133	-	Caul_4174	-	serine/threonine protein kinase
4161	 58.02	-2	4540401..4540874	-	157	167648134	-	Caul_4175	-	hypothetical protein
4162	 58.55	-2	4540946..4541869	-	307	167648135	-	Caul_4176	-	hypothetical protein
4163	 50.78	-2	4541919..4542239	-	106	167648136	-	Caul_4177	-	XRE family transcriptional regulator
4164	 59.57	-2	4543285..4543707	-	140	167648137	-	Caul_4178	-	hypothetical protein
4165	 59.50	-2	4544433..4544711	-	92	167648138	-	Caul_4179	-	XRE family transcriptional regulator
4166	 67.62	0	4544801..4545322	+	173	167648139	-	Caul_4180	-	hypothetical protein
4167	 67.17	0	4545425..4545622	+	65	167648140	-	Caul_4181	-	hypothetical protein
4168	 64.08	0	4545638..4547377	+	579	167648141	-	Caul_4182	-	resolvase domain-containing protein
4169	 68.26	0	4547550..4548866	-	438	167648142	-	Caul_4183	-	xanthine/uracil/vitamin C permease
4170	 70.31	0	4548869..4549939	-	356	167648143	-	Caul_4184	-	purine nucleoside permease
4171	 67.71	0	4550198..4551160	-	320	167648144	-	Caul_4185	-	ABC transporter related
4172	 74.83	+1	4551305..4551598	+	97	167648145	-	Caul_4186	-	hypothetical protein
4173	 71.69	+1	4551608..4552045	+	145	167648146	-	Caul_4187	-	thioesterase superfamily protein
4174	 66.57	0	4552217..4553203	-	328	167648147	-	Caul_4188	-	type II secretion system protein
4175	 66.46	0	4553215..4554192	-	325	167648148	-	Caul_4189	-	type II secretion system protein
4176	 67.92	0	4554196..4555710	-	504	167648149	-	Caul_4190	-	type II secretion system protein E
4177	 72.15	+1	4555715..4557301	-	528	167648150	-	Caul_4191	-	pilus assembly protein CpaE
4178	 72.06	+1	4557301..4558005	-	234	167648151	-	Caul_4192	-	pilus biogenesis lipoprotein CpaD
4179	 68.56	0	4558016..4559653	-	545	167648152	-	Caul_4193	-	type II and III secretion system protein
4180	 71.04	0	4559650..4560540	-	296	167648153	-	Caul_4194	-	Flp pilus assembly protein CpaB
4181	 69.98	0	4560739..4561251	-	170	167648154	-	Caul_4195	-	peptidase A24A prepilin type IV
4182	 62.37	-1	4561420..4561605	-	61	167648155	-	Caul_4196	-	Flp/Fap pilin component
4183	 72.73	+1	4561916..4562311	+	131	167648156	-	Caul_4197	-	hypothetical protein
4184	 67.19	0	4562420..4562995	+	191	167648157	-	Caul_4198	-	TadE family protein
4185	 67.02	0	4562986..4563552	+	188	167648158	-	Caul_4199	-	hypothetical protein
4186	 75.00	+1	4563549..4564316	-	255	167648159	-	Caul_4200	-	aminotransferase class IV
4187	 73.43	+1	4564313..4565701	-	462	167648160	-	Caul_4201	-	para-aminobenzoate synthase component I
4188	 69.44	0	4565729..4567168	-	479	167648161	-	Caul_4202	-	hypothetical protein
4189	 69.90	0	4567274..4568047	-	257	167648162	-	Caul_4203	-	protein tyrosine/serine phosphatase
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.