IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3883	 69.75	0	4217743..4218423	-	226	167647856	-	Caul_3896	-	two component transcriptional regulator
3884	 73.90	+1	4218443..4218760	-	105	167647857	-	Caul_3897	-	peptidase
3885	 68.77	0	4218944..4219276	-	110	167647858	-	Caul_3898	-	toxin ChpA
3886	 62.50	-1	4219276..4219539	-	87	167647859	-	Caul_3899	-	transcriptional regulator/antitoxin, MazE
3887	 71.66	+1	4219589..4220530	-	313	167647860	-	Caul_3900	-	heat shock protein DnaJ domain-containing protein
3888	 74.56	+1	4220611..4224450	-	1279	167647861	-	Caul_3901	-	gene transfer agent (GTA) orfg15, like protein
3889	 71.85	+1	4224462..4225040	-	192	167647862	-	Caul_3902	-	NlpC/P60 family phage cell wall peptidase
3890	 72.50	+1	4225037..4225687	-	216	167647863	-	Caul_3903	-	hypothetical protein
3891	 74.72	+1	4225687..4226319	-	210	167647864	-	Caul_3904	-	hypothetical protein
3892	 68.41	0	4226608..4227066	+	152	167647865	-	Caul_3905	-	hypothetical protein
3893	 58.92	-2	4227133..4227558	+	141	167647866	-	Caul_3906	-	excinuclease ABC subunit C
3894	 77.02	+2	4227575..4228105	-	176	167647867	-	Caul_3907	-	hypothetical protein
3895	 75.24	+1	4228105..4228314	-	69	167647868	-	Caul_3908	-	hypothetical protein
3896	 74.43	+1	4228301..4228609	-	102	167647869	-	Caul_3909	-	hypothetical protein
3897	 72.90	+1	4228658..4229074	-	138	167647870	-	Caul_3910	-	TP901-1 family phage major tail protein
3898	 75.06	+1	4229237..4229641	-	134	167647871	-	Caul_3911	-	hypothetical protein
3899	 76.30	+2	4229638..4229907	-	89	167647872	-	Caul_3912	-	uncharacterized phage protein
3900	 69.60	0	4230066..4231292	-	408	167647873	-	Caul_3913	-	HK97 family phage major capsid protein
3901	 73.33	+1	4231459..4231878	-	139	167647874	-	Caul_3914	-	HK97 family phage prohead protease
3902	 77.37	+2	4232021..4232263	-	80	167647875	-	Caul_3915	-	hypothetical protein
3903	 73.33	+1	4232397..4233551	-	384	167647876	-	Caul_3916	-	HK97 family phage portal protein
3904	 64.09	0	4233672..4234136	+	154	167647877	-	Caul_3917	-	hypothetical protein
3905	 71.82	+1	4234138..4235457	-	439	167647878	-	Caul_3918	-	hypothetical protein
3906	 64.18	0	4236069..4236632	+	187	167647879	-	Caul_3919	-	hypothetical protein
3907	 63.39	-1	4236776..4237264	-	162	167647880	-	Caul_3920	-	hypothetical protein
3908	 71.06	0	4237332..4239470	+	712	167647881	-	Caul_3921	-	1A family penicillin-binding protein
3909	 65.93	0	4240152..4242998	+	948	167647882	-	Caul_3922	-	TonB-dependent receptor
3910	 68.63	0	4243251..4245083	+	610	167647883	-	Caul_3923	-	ABC transporter related
3911	 69.52	0	4245340..4245549	+	69	167647884	-	Caul_3924	-	hypothetical protein
3912	 69.13	0	4245641..4246573	+	310	167647885	-	Caul_3925	-	hypothetical protein
3913	 69.06	0	4246622..4248547	-	641	167647886	-	Caul_3926	-	K potassium transporter
3914	 65.67	0	4248728..4248928	+	66	167647887	-	Caul_3927	-	hypothetical protein
3915	 72.52	+1	4249598..4250503	+	301	167647888	-	Caul_3928	-	hypothetical protein
3916	 70.46	0	4250541..4251173	-	210	167647889	-	Caul_3929	-	TetR family transcriptional regulator
3917	 76.11	+2	4251421..4252479	+	352	167647890	-	Caul_3930	-	RND family efflux transporter MFP subunit
3918	 70.46	0	4252718..4255798	+	1026	167647891	-	Caul_3931	-	acriflavin resistance protein
3919	 69.07	0	4256058..4256597	-	179	167647892	-	Caul_3932	-	TetR family transcriptional regulator
3920	 66.36	0	4256709..4257353	+	214	167647893	-	Caul_3933	-	glutathione S-transferase domain-containing protein
3921	 68.97	0	4257557..4259206	+	549	167647894	-	Caul_3934	-	FAD dependent oxidoreductase
3922	 67.62	0	4259376..4260533	+	385	167647895	-	Caul_3935	-	Rieske (2Fe-2S) domain-containing protein
3923	 75.76	+2	4260678..4261271	+	197	167647896	-	Caul_3936	-	TetR family transcriptional regulator
3924	 69.29	0	4261268..4261801	+	177	167647897	-	Caul_3937	-	GCN5-related N-acetyltransferase
3925	 71.25	0	4261798..4262037	-	79	167647898	-	Caul_3938	-	hypothetical protein
3926	 64.52	0	4262297..4262482	-	61	167647899	-	Caul_3939	-	hypothetical protein
3927	 70.35	0	4262541..4263923	-	460	167647900	-	Caul_3940	-	amino acid permease-associated region
3928	 64.73	0	4264170..4266548	-	792	167647901	-	Caul_3941	-	TonB-dependent receptor
3929	 71.32	0	4266675..4268696	-	673	167647902	-	Caul_3942	-	sulfotransferase
3930	 71.87	+1	4268876..4270162	-	428	167647903	-	Caul_3943	-	FAD dependent oxidoreductase
3931	 66.95	0	4270301..4271701	-	466	167647904	-	Caul_3944	-	glutamate--putrescine ligase
3932	 65.86	0	4271736..4271984	+	82	167647905	-	Caul_3945	-	hypothetical protein
3933	 67.67	0	4272088..4273488	-	466	167647906	-	Caul_3946	-	putative aminotransferase
3934	 70.74	0	4273606..4274391	-	261	167647907	-	Caul_3947	-	peptidase C26
3935	 68.17	0	4274546..4275679	-	377	167647908	-	Caul_3948	-	spermidine/putrescine ABC transporter ATPase subunit
3936	 67.25	0	4275809..4276672	-	287	167647909	-	Caul_3949	-	ornithine carbamoyltransferase
3937	 65.99	0	4276827..4277714	-	295	167647910	-	Caul_3950	-	binding-protein-dependent transport systems inner membrane component
3938	 62.22	-1	4277860..4278960	-	366	167647911	-	Caul_3951	-	extracellular solute-binding protein
3939	 69.42	0	4279190..4280569	-	459	167647912	-	Caul_3952	-	glutamine synthetase catalytic region
3940	 71.78	+1	4280757..4282124	-	455	167647913	-	Caul_3953	-	aminotransferase
3941	 69.50	0	4282315..4283760	-	481	167647914	-	Caul_3954	-	succinic semialdehyde dehydrogenase
3942	 69.96	0	4283766..4285253	-	495	167647915	-	Caul_3955	-	aldehyde dehydrogenase
3943	 74.60	+1	4285497..4286177	-	226	167647916	-	Caul_3956	-	GntR family transcriptional regulator
3944	 70.19	0	4286353..4287687	+	444	167647917	-	Caul_3957	-	beta alanine--pyruvate transaminase
3945	 67.59	0	4287848..4288279	+	143	167647918	-	Caul_3958	-	hypothetical protein
3946	 69.49	0	4288328..4289107	+	259	167647919	-	Caul_3959	-	peptidase M50
3947	 69.47	0	4289104..4290207	-	367	167647920	-	Caul_3960	-	methyl-accepting chemotaxis sensory transducer
3948	 71.01	0	4290654..4291919	+	421	167647921	-	Caul_3961	-	chorismate synthase
3949	 64.79	0	4291954..4292166	-	70	167647922	-	Caul_3962	-	hypothetical protein
3950	 67.26	0	4292503..4293009	+	168	167647923	-	Caul_3963	-	response regulator receiver protein
3951	 69.26	0	4293144..4293374	+	76	167647924	-	Caul_3964	-	hypothetical protein
3952	 67.76	0	4293384..4293749	-	121	167647925	-	Caul_3965	-	DGPFAETKE family protein
3953	 70.07	0	4293874..4294812	-	312	167647926	-	Caul_3966	-	transposase IS116/IS110/IS902 family protein
3954	 55.15	-2	4295366..4296529	-	387	167647927	-	Caul_3967	-	hypothetical protein
3955	 75.02	+1	4296608..4298188	-	526	167647928	-	Caul_3968	-	integral membrane sensor signal transduction histidine kinase
3956	 72.13	+1	4298185..4298916	-	243	167647929	-	Caul_3969	-	two component transcriptional regulator
3957	 69.22	0	4299033..4300049	-	338	167647930	-	Caul_3970	-	AraC family transcriptional regulator
3958	 72.03	+1	4300434..4301366	-	310	167647931	-	Caul_3971	-	galactose 1-dehydrogenase
3959	 71.34	0	4301584..4303875	-	763	167647932	-	Caul_3972	-	glycoside hydrolase family 3 protein
3960	 69.26	0	4303991..4304221	+	76	167647933	-	Caul_3973	-	hypothetical protein
3961	 72.71	+1	4304358..4305251	-	297	167647934	-	Caul_3974	-	hypothetical protein
3962	 70.24	0	4305420..4307012	-	530	167647935	-	Caul_3975	-	acyl-CoA synthetase
3963	 69.93	0	4307157..4307615	-	152	167647936	-	Caul_3976	-	hypothetical protein
3964	 75.67	+2	4307715..4308014	-	99	167647937	-	Caul_3977	-	outer membrane protein
3965	 71.11	0	4308206..4309939	+	577	167647938	-	Caul_3978	-	signal transduction histidine kinase
3966	 66.67	0	4310089..4310790	+	233	167647939	-	Caul_3979	-	isochorismatase hydrolase
3967	 64.87	0	4310914..4311303	+	129	167647940	-	Caul_3980	-	endoribonuclease L-PSP
3968	 68.65	0	4311303..4312109	+	268	167647941	-	Caul_3981	-	alpha/beta hydrolase fold
3969	 66.57	0	4312263..4313327	+	354	167647942	-	Caul_3982	-	luciferase family protein
3970	 70.20	0	4313480..4313989	-	169	167647943	-	Caul_3983	-	peptidylprolyl isomerase FKBP-type
3971	 69.44	0	4314147..4314722	+	191	167647944	-	Caul_3984	-	TetR family transcriptional regulator
3972	 71.31	0	4314749..4315804	+	351	167647945	-	Caul_3985	-	NAD-dependent epimerase/dehydratase
3973	 66.67	0	4315946..4317880	-	644	167647946	-	Caul_3986	-	peptidase M61 domain-containing protein
3974	 69.38	0	4318093..4318461	-	122	167647947	-	Caul_3987	-	response regulator receiver protein
3975	 68.70	0	4318636..4319322	+	228	167647948	-	Caul_3988	-	PepSY-associated TM helix domain-containing protein
3976	 71.00	0	4319334..4319864	+	176	167647949	-	Caul_3989	-	hypothetical protein
3977	 70.83	0	4319894..4320781	+	295	167647950	-	Caul_3990	-	hypothetical protein
3978	 75.34	+1	4321004..4322029	+	341	167647951	-	Caul_3991	-	ApbE family lipoprotein
3979	 74.20	+1	4322026..4323591	+	521	167647952	-	Caul_3992	-	flavodoxin/nitric oxide synthase
3980	 75.63	+2	4323634..4324191	-	185	167647953	-	Caul_3993	-	hypothetical protein
3981	 66.84	0	4324196..4324774	-	192	167647954	-	Caul_3994	-	hypothetical protein
3982	 71.10	0	4324861..4325919	+	352	167647955	-	Caul_3995	-	LacI family transcription regulator
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.