IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3716	 67.06	0	4038844..4039854	+	336	167647689	-	Caul_3727	-	HfaB protein
3717	 69.20	0	4039832..4041013	+	393	167647690	-	Caul_3728	-	hypothetical protein
3718	 60.54	-1	4041881..4042468	-	195	167647691	-	Caul_3729	-	hypothetical protein
3719	 67.94	0	4042695..4043555	-	286	167647692	-	Caul_3730	-	integrase catalytic region
3720	 66.67	0	4043552..4043866	-	104	167647693	-	Caul_3731	-	transposase IS3/IS911 family protein
3721	 74.94	+1	4044568..4044978	+	136	167647694	-	Caul_3732	-	CopY family transcriptional regulator
3722	 76.38	+2	4044975..4046765	+	596	167647695	-	Caul_3733	-	peptidase M56 BlaR1
3723	 70.12	0	4046903..4049827	+	974	167647696	-	Caul_3734	-	peptidase M16 domain-containing protein
3724	 72.97	+1	4050195..4051130	+	311	167647697	-	Caul_3735	-	LysR family transcriptional regulator
3725	 60.48	-1	4051217..4051426	+	69	167647698	-	Caul_3736	-	hypothetical protein
3726	 68.41	0	4051692..4052378	+	228	167647699	-	Caul_3737	-	GCN5-related N-acetyltransferase
3727	 69.63	0	4052590..4054578	-	662	167647700	-	Caul_3738	-	OPT family oligopeptide transporter
3728	 65.37	0	4054723..4055031	-	102	167647701	-	Caul_3739	-	hypothetical protein
3729	 66.67	0	4055130..4055435	-	101	167647702	-	Caul_3740	-	hypothetical protein
3730	 66.67	0	4055587..4056360	-	257	167647703	-	Caul_3741	-	PhoH family protein
3731	 61.96	-1	4056705..4057235	+	176	167647704	-	Caul_3742	-	transferase family protein
3732	 72.97	+1	4057280..4059454	+	724	167647705	-	Caul_3743	-	integral membrane sensor hybrid histidine kinase
3733	 68.65	0	4059489..4061153	+	554	167647706	-	Caul_3744	-	choline dehydrogenase
3734	 69.42	0	4061365..4062309	+	314	167647707	-	Caul_3745	-	aldo/keto reductase
3735	 69.40	0	4062619..4063167	-	182	167647708	-	Caul_3746	-	hypothetical protein
3736	 71.06	0	4063353..4064285	+	310	167647709	-	Caul_3747	-	hypothetical protein
3737	 63.43	-1	4064393..4064608	+	71	167647710	-	Caul_3748	-	hypothetical protein
3738	 64.03	0	4064648..4065292	+	214	167647711	-	Caul_3749	-	glyoxalase/bleomycin resistance protein/dioxygenase
3739	 63.22	-1	4065379..4065639	+	86	167647712	-	Caul_3750	-	prevent-host-death family protein
3740	 67.36	0	4065643..4066077	+	144	167647713	-	Caul_3751	-	hypothetical protein
3741	 69.32	0	4066185..4067051	-	288	167647714	-	Caul_3752	-	serine O-acetyltransferase
3742	 67.95	0	4067100..4067720	-	206	167647715	-	Caul_3753	-	NUDIX hydrolase
3743	 71.04	0	4067878..4068495	+	205	167647716	-	Caul_3754	-	nitroreductase
3744	 69.06	0	4068771..4071608	+	945	167647717	-	Caul_3755	-	TonB-dependent receptor plug
3745	 68.20	0	4071851..4072306	-	151	167647718	-	Caul_3756	-	7-cyano-7-deazaguanine reductase
3746	 72.76	+1	4072399..4073202	+	267	167647719	-	Caul_3757	-	short-chain dehydrogenase/reductase SDR
3747	 63.22	-1	4073457..4074182	+	241	167647720	-	Caul_3758	-	hypothetical protein
3748	 70.65	0	4074248..4075501	-	417	167647721	-	Caul_3759	-	major facilitator transporter
3749	 67.12	0	4075691..4078099	-	802	167647722	-	Caul_3760	-	TonB-dependent receptor
3750	 71.91	+1	4078372..4079115	-	247	167647723	-	Caul_3761	-	GntR family transcriptional regulator
3751	 66.38	0	4079383..4080444	+	353	167647724	-	Caul_3762	-	signal transduction histidine kinase
3752	 68.86	0	4080561..4081061	+	166	167647725	-	Caul_3763	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
3753	 65.04	0	4081058..4081855	-	265	167647726	-	Caul_3764	-	NLPA lipoprotein
3754	 67.45	0	4082014..4082268	+	84	167647727	-	Caul_3765	-	hypothetical protein
3755	 67.49	0	4082299..4082661	-	120	167647728	-	Caul_3766	-	hypothetical protein
3756	 69.37	0	4082823..4083488	-	221	167647729	-	Caul_3767	-	binding-protein-dependent transport systems inner membrane component
3757	 70.48	0	4083485..4084480	-	331	167647730	-	Caul_3768	-	ABC transporter related
3758	 70.23	0	4084595..4086727	-	710	167647731	-	Caul_3769	-	multi-sensor hybrid histidine kinase
3759	 64.62	0	4087257..4088186	-	309	167647732	-	Caul_3770	-	amidohydrolase 2
3760	 71.63	0	4088199..4088984	-	261	167647733	-	Caul_3771	-	HpcH/HpaI aldolase
3761	 68.51	0	4088984..4089904	-	306	167647734	-	Caul_3772	-	hypothetical protein
3762	 64.43	0	4089934..4090380	-	148	167647735	-	Caul_3773	-	hypothetical protein
3763	 68.30	0	4090480..4091766	-	428	167647736	-	Caul_3774	-	major facilitator transporter
3764	 71.39	0	4091939..4092784	-	281	167647737	-	Caul_3775	-	amidohydrolase 2
3765	 70.19	0	4092820..4093557	-	245	167647738	-	Caul_3776	-	short-chain dehydrogenase/reductase SDR
3766	 66.35	0	4093606..4094541	-	311	167647739	-	Caul_3777	-	hypothetical protein
3767	 70.41	0	4094551..4096020	-	489	167647740	-	Caul_3778	-	aldehyde dehydrogenase
3768	 67.65	0	4096200..4097219	-	339	167647741	-	Caul_3779	-	AraC family transcriptional regulator
3769	 68.02	0	4097351..4098088	-	245	167647742	-	Caul_3780	-	GntR family transcriptional regulator
3770	 70.77	0	4098346..4099539	+	397	167647743	-	Caul_3781	-	iron-containing alcohol dehydrogenase
3771	 68.49	0	4099640..4100188	-	182	167647744	-	Caul_3782	-	hypothetical protein
3772	 66.50	0	4100419..4103382	-	987	167647745	-	Caul_3783	-	TonB-dependent receptor plug
3773	 71.38	0	4103794..4104705	+	303	167647746	-	Caul_3784	-	hypothetical protein
3774	 67.12	0	4104732..4105829	+	365	167647747	-	Caul_3785	-	oxidoreductase domain-containing protein
3775	 65.28	0	4105890..4106393	-	167	167647748	-	Caul_3786	-	hypothetical protein
3776	 72.81	+1	4106437..4106778	-	113	167647749	-	Caul_3787	-	hypothetical protein
3777	 65.83	0	4106997..4107353	-	118	167647750	-	Caul_3788	-	hypothetical protein
3778	 66.92	0	4107840..4108229	+	129	167647751	-	Caul_3790	-	XRE family transcriptional regulator
3779	 70.07	0	4108280..4109044	-	254	167647752	-	Caul_3791	-	molybdopterin binding domain-containing protein
3780	 66.53	0	4109096..4109809	+	237	167647753	-	Caul_3792	-	sugar fermentation stimulation protein
3781	 67.15	0	4109820..4110650	+	276	167647754	-	Caul_3793	-	methionine aminopeptidase, type I
3782	 67.68	0	4110754..4111344	+	196	167647755	-	Caul_3794	-	DNA repair protein RadC
3783	 60.47	-1	4111503..4112744	+	413	167647756	-	Caul_3795	-	integrase family protein
3784	 62.38	-1	4112741..4113160	+	139	167647757	-	Caul_3796	-	hypothetical protein
3785	 54.92	-2	4113202..4113567	+	121	167647758	-	Caul_3797	-	hypothetical protein
3786	 60.75	-1	4113572..4113943	+	123	167647759	-	Caul_3798	-	helix-turn-helix domain-containing protein
3787	 61.67	-1	4113940..4115259	+	439	167647760	-	Caul_3799	-	hypothetical protein
3788	 58.76	-2	4115259..4115789	+	176	167647761	-	Caul_3800	-	hypothetical protein
3789	 62.76	-1	4115786..4117834	+	682	167647762	-	Caul_3801	-	SMC domain-containing protein
3790	 59.81	-2	4117831..4120149	+	772	167647763	-	Caul_3802	-	hypothetical protein
3791	 57.83	-2	4120364..4123894	+	1176	167647764	-	Caul_3803	-	helicase-like protein
3792	 60.00	-2	4124317..4125441	-	374	167647765	-	Caul_3804	-	TIR protein
3793	 59.78	-2	4125487..4126110	-	207	167647766	-	Caul_3805	-	hypothetical protein
3794	 60.72	-1	4126107..4127873	-	588	167647767	-	Caul_3806	-	DNA helicase II
3795	 59.44	-2	4127866..4129941	-	691	167647768	-	Caul_3807	-	hypothetical protein
3796	 65.37	0	4130621..4132705	+	694	167647769	-	Caul_3808	-	nuclease
3797	 65.28	0	4132925..4133356	+	143	167647770	-	Caul_3809	-	hypothetical protein
3798	 64.42	0	4134020..4134331	+	103	167647771	-	Caul_3810	-	hypothetical protein
3799	 64.32	0	4134716..4135906	+	396	167647772	-	Caul_3811	-	hypothetical protein
3800	 58.23	-2	4136085..4136321	-	78	167647773	-	Caul_3812	-	XRE family transcriptional regulator
3801	 64.39	0	4136508..4136771	+	87	167647774	-	Caul_3813	-	hypothetical protein
3802	 61.69	-1	4136898..4137098	+	66	167647775	-	Caul_3814	-	hypothetical protein
3803	 67.47	0	4137235..4137609	+	124	167647776	-	Caul_3815	-	hypothetical protein
3804	 68.79	0	4137748..4138029	+	93	167647777	-	Caul_3816	-	putative transcriptional regulator
3805	 67.34	0	4138041..4138925	+	294	167647778	-	Caul_3817	-	putative plasmid replication protein A
3806	 70.42	0	4139137..4139775	+	212	167647779	-	Caul_3818	-	cobyrinic acid ac-diamide synthase
3807	 67.84	0	4139772..4140026	+	84	167647780	-	Caul_3819	-	hypothetical protein
3808	 67.62	0	4140023..4140544	+	173	167647781	-	Caul_3820	-	hypothetical protein
3809	 66.67	0	4140541..4141086	+	181	167647782	-	Caul_3821	-	putative conjugal transfer protein precursor
3810	 65.48	0	4141132..4141467	+	111	167647783	-	Caul_3822	-	hypothetical protein
3811	 66.77	0	4141472..4142404	+	310	167647784	-	Caul_3823	-	lytic transglycosylase catalytic
3812	 68.51	0	4142649..4144388	+	579	167647785	-	Caul_3824	-	hypothetical protein
3813	 65.27	0	4144420..4146420	+	666	167647786	-	Caul_3825	-	TRAG family protein
3814	 68.05	0	4146428..4146862	+	144	167647787	-	Caul_3826	-	hypothetical protein
3815	 69.05	0	4147079..4148044	+	321	167647788	-	Caul_3827	-	P-type conjugative transfer ATPase TrbB
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.