IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3671	 65.65	0	3976714..3978195	+	493	167647644	-	Caul_3682	-	FAD dependent oxidoreductase
3672	 68.65	0	3978400..3979056	-	218	167647645	-	Caul_3683	-	hypothetical protein
3673	 69.75	0	3979059..3979868	-	269	167647646	-	Caul_3684	-	enoyl-CoA hydratase
3674	 65.16	0	3980141..3980539	+	132	167647647	-	Caul_3685	-	response regulator receiver protein
3675	 70.10	0	3980594..3981205	+	203	167647648	-	Caul_3686	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
3676	 58.04	-2	3981304..3981732	-	142	167647649	-	Caul_3687	-	TraR/DksA family transcriptional regulator
3677	 72.03	+1	3981909..3982337	-	142	167647650	-	Caul_3688	-	flagellar assembly regulator FliX
3678	 68.01	0	3982570..3983685	+	371	167647651	-	Caul_3689	-	flagellar basal body P-ring protein
3679	 62.58	-1	3983685..3984002	+	105	167647652	-	Caul_3690	-	chemotactic signal-response protein CheL
3680	 71.81	+1	3984006..3984452	+	148	167647653	-	Caul_3691	-	flagellar basal-body protein FlbY
3681	 61.29	-1	3984665..3985873	+	402	167647654	-	Caul_3692	-	acyltransferase 3
3682	 70.37	0	3986099..3987907	+	602	167647655	-	Caul_3693	-	integral membrane sensor hybrid histidine kinase
3683	 68.89	0	3988018..3988692	+	224	167647656	-	Caul_3694	-	hypothetical protein
3684	 66.67	0	3988770..3988952	-	60	167647657	-	Caul_3695	-	hypothetical protein
3685	 70.60	0	3989121..3989603	+	160	167647658	-	Caul_3696	-	hypothetical protein
3686	 67.15	0	3989747..3992656	+	969	167647659	-	Caul_3697	-	excinuclease ABC subunit A
3687	 66.56	0	3992825..3993745	-	306	167647660	-	Caul_3698	-	hypothetical protein
3688	 69.43	0	3993916..3994530	+	204	167647661	-	Caul_3699	-	glutathione S-transferase domain-containing protein
3689	 68.51	0	3994605..3995474	-	289	167647662	-	Caul_3700	-	hypothetical protein
3690	 72.91	+1	3995471..3996271	-	266	167647663	-	Caul_3701	-	hypothetical protein
3691	 68.88	0	3996464..3997906	+	480	167647664	-	Caul_3702	-	tRNA (uracil-5-)-methyltransferase Gid
3692	 69.61	0	3998037..3999158	+	373	167647665	-	Caul_3703	-	MscS mechanosensitive ion channel
3693	 72.78	+1	3999119..3999985	-	288	167647666	-	Caul_3704	-	hypothetical protein
3694	 70.89	0	4000253..4001554	+	433	167647667	-	Caul_3705	-	allantoate amidohydrolase
3695	 68.65	0	4001577..4002887	+	436	167647668	-	Caul_3706	-	Serine--pyruvate transaminase
3696	 66.56	0	4003018..4003935	+	305	167647669	-	Caul_3707	-	urate catabolism protein
3697	 67.62	0	4004126..4004647	+	173	167647670	-	Caul_3708	-	hypothetical protein
3698	 65.57	0	4004649..4005833	+	394	167647671	-	Caul_3709	-	hypothetical protein
3699	 64.90	0	4005830..4006510	+	226	167647672	-	Caul_3710	-	TetR family transcriptional regulator
3700	 69.51	0	4006657..4007604	-	315	167647673	-	Caul_3711	-	acetamidase/formamidase
3701	 72.22	+1	4007838..4008053	+	71	167647674	-	Caul_3712	-	hypothetical protein
3702	 73.69	+1	4008050..4009459	+	469	167647675	-	Caul_3713	-	amidase
3703	 64.18	0	4009456..4009857	+	133	167647676	-	Caul_3714	-	hypothetical protein
3704	 64.62	0	4010073..4012268	+	731	167647677	-	Caul_3715	-	TonB-dependent receptor
3705	 66.77	0	4012405..4013364	+	319	167647678	-	Caul_3716	-	inosine/uridine-preferring nucleoside hydrolase
3706	 68.60	0	4013466..4014755	-	429	167647679	-	Caul_3717	-	guanine deaminase
3707	 71.20	0	4014742..4015755	-	337	167647680	-	Caul_3718	-	xanthine dehydrogenase accessory protein XdhC
3708	 69.27	0	4015928..4018267	-	779	167647681	-	Caul_3719	-	xanthine dehydrogenase, molybdopterin binding subunit
3709	 69.10	0	4018260..4019741	-	493	167647682	-	Caul_3720	-	xanthine dehydrogenase, small subunit
3710	 67.24	0	4019743..4020090	-	115	167647683	-	Caul_3721	-	hydroxyisourate hydrolase
3711	 68.88	0	4020469..4022769	+	766	167647684	-	Caul_3722	-	malic enzyme
3712	 68.52	0	4022942..4023481	-	179	167647685	-	Caul_3723	-	cold-shock DNA-binding domain-containing protein
3713	 69.39	0	4037204..4037644	+	146	167647686	-	Caul_3724	-	BadM/Rrf2 family transcriptional regulator
3714	 67.36	0	4037728..4038159	-	143	167647687	-	Caul_3725	-	signal-transduction protein
3715	 62.63	-1	4038384..4038854	+	156	167647688	-	Caul_3726	-	HfaA protein
3716	 67.06	0	4038844..4039854	+	336	167647689	-	Caul_3727	-	HfaB protein
3717	 69.20	0	4039832..4041013	+	393	167647690	-	Caul_3728	-	hypothetical protein
3718	 60.54	-1	4041881..4042468	-	195	167647691	-	Caul_3729	-	hypothetical protein
3719	 67.94	0	4042695..4043555	-	286	167647692	-	Caul_3730	-	integrase catalytic region
3720	 66.67	0	4043552..4043866	-	104	167647693	-	Caul_3731	-	transposase IS3/IS911 family protein
3721	 74.94	+1	4044568..4044978	+	136	167647694	-	Caul_3732	-	CopY family transcriptional regulator
3722	 76.38	+2	4044975..4046765	+	596	167647695	-	Caul_3733	-	peptidase M56 BlaR1
3723	 70.12	0	4046903..4049827	+	974	167647696	-	Caul_3734	-	peptidase M16 domain-containing protein
3724	 72.97	+1	4050195..4051130	+	311	167647697	-	Caul_3735	-	LysR family transcriptional regulator
3725	 60.48	-1	4051217..4051426	+	69	167647698	-	Caul_3736	-	hypothetical protein
3726	 68.41	0	4051692..4052378	+	228	167647699	-	Caul_3737	-	GCN5-related N-acetyltransferase
3727	 69.63	0	4052590..4054578	-	662	167647700	-	Caul_3738	-	OPT family oligopeptide transporter
3728	 65.37	0	4054723..4055031	-	102	167647701	-	Caul_3739	-	hypothetical protein
3729	 66.67	0	4055130..4055435	-	101	167647702	-	Caul_3740	-	hypothetical protein
3730	 66.67	0	4055587..4056360	-	257	167647703	-	Caul_3741	-	PhoH family protein
3731	 61.96	-1	4056705..4057235	+	176	167647704	-	Caul_3742	-	transferase family protein
3732	 72.97	+1	4057280..4059454	+	724	167647705	-	Caul_3743	-	integral membrane sensor hybrid histidine kinase
3733	 68.65	0	4059489..4061153	+	554	167647706	-	Caul_3744	-	choline dehydrogenase
3734	 69.42	0	4061365..4062309	+	314	167647707	-	Caul_3745	-	aldo/keto reductase
3735	 69.40	0	4062619..4063167	-	182	167647708	-	Caul_3746	-	hypothetical protein
3736	 71.06	0	4063353..4064285	+	310	167647709	-	Caul_3747	-	hypothetical protein
3737	 63.43	-1	4064393..4064608	+	71	167647710	-	Caul_3748	-	hypothetical protein
3738	 64.03	0	4064648..4065292	+	214	167647711	-	Caul_3749	-	glyoxalase/bleomycin resistance protein/dioxygenase
3739	 63.22	-1	4065379..4065639	+	86	167647712	-	Caul_3750	-	prevent-host-death family protein
3740	 67.36	0	4065643..4066077	+	144	167647713	-	Caul_3751	-	hypothetical protein
3741	 69.32	0	4066185..4067051	-	288	167647714	-	Caul_3752	-	serine O-acetyltransferase
3742	 67.95	0	4067100..4067720	-	206	167647715	-	Caul_3753	-	NUDIX hydrolase
3743	 71.04	0	4067878..4068495	+	205	167647716	-	Caul_3754	-	nitroreductase
3744	 69.06	0	4068771..4071608	+	945	167647717	-	Caul_3755	-	TonB-dependent receptor plug
3745	 68.20	0	4071851..4072306	-	151	167647718	-	Caul_3756	-	7-cyano-7-deazaguanine reductase
3746	 72.76	+1	4072399..4073202	+	267	167647719	-	Caul_3757	-	short-chain dehydrogenase/reductase SDR
3747	 63.22	-1	4073457..4074182	+	241	167647720	-	Caul_3758	-	hypothetical protein
3748	 70.65	0	4074248..4075501	-	417	167647721	-	Caul_3759	-	major facilitator transporter
3749	 67.12	0	4075691..4078099	-	802	167647722	-	Caul_3760	-	TonB-dependent receptor
3750	 71.91	+1	4078372..4079115	-	247	167647723	-	Caul_3761	-	GntR family transcriptional regulator
3751	 66.38	0	4079383..4080444	+	353	167647724	-	Caul_3762	-	signal transduction histidine kinase
3752	 68.86	0	4080561..4081061	+	166	167647725	-	Caul_3763	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
3753	 65.04	0	4081058..4081855	-	265	167647726	-	Caul_3764	-	NLPA lipoprotein
3754	 67.45	0	4082014..4082268	+	84	167647727	-	Caul_3765	-	hypothetical protein
3755	 67.49	0	4082299..4082661	-	120	167647728	-	Caul_3766	-	hypothetical protein
3756	 69.37	0	4082823..4083488	-	221	167647729	-	Caul_3767	-	binding-protein-dependent transport systems inner membrane component
3757	 70.48	0	4083485..4084480	-	331	167647730	-	Caul_3768	-	ABC transporter related
3758	 70.23	0	4084595..4086727	-	710	167647731	-	Caul_3769	-	multi-sensor hybrid histidine kinase
3759	 64.62	0	4087257..4088186	-	309	167647732	-	Caul_3770	-	amidohydrolase 2
3760	 71.63	0	4088199..4088984	-	261	167647733	-	Caul_3771	-	HpcH/HpaI aldolase
3761	 68.51	0	4088984..4089904	-	306	167647734	-	Caul_3772	-	hypothetical protein
3762	 64.43	0	4089934..4090380	-	148	167647735	-	Caul_3773	-	hypothetical protein
3763	 68.30	0	4090480..4091766	-	428	167647736	-	Caul_3774	-	major facilitator transporter
3764	 71.39	0	4091939..4092784	-	281	167647737	-	Caul_3775	-	amidohydrolase 2
3765	 70.19	0	4092820..4093557	-	245	167647738	-	Caul_3776	-	short-chain dehydrogenase/reductase SDR
3766	 66.35	0	4093606..4094541	-	311	167647739	-	Caul_3777	-	hypothetical protein
3767	 70.41	0	4094551..4096020	-	489	167647740	-	Caul_3778	-	aldehyde dehydrogenase
3768	 67.65	0	4096200..4097219	-	339	167647741	-	Caul_3779	-	AraC family transcriptional regulator
3769	 68.02	0	4097351..4098088	-	245	167647742	-	Caul_3780	-	GntR family transcriptional regulator
3770	 70.77	0	4098346..4099539	+	397	167647743	-	Caul_3781	-	iron-containing alcohol dehydrogenase
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.