IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
293	 72.81	+1	327313..329835	+	840	167644266	-	Caul_0294	-	phosphoenolpyruvate-protein phosphotransferase
294	 70.54	0	329841..331646	+	601	167644267	-	Caul_0295	-	PTS system, N-acetylglucosamine-specific IIBC subunit
295	 67.81	0	331678..333252	+	524	167644268	-	Caul_0296	-	tryptophan halogenase
296	 67.98	0	333249..334847	+	532	167644269	-	Caul_0297	-	tryptophan halogenase
297	 71.85	+1	334844..335596	+	250	167644270	-	Caul_0298	-	hypothetical protein
298	 66.57	0	335734..336765	+	343	167644271	-	Caul_0299	-	alpha/beta hydrolase fold
299	 66.67	0	336868..337638	+	256	167644272	-	Caul_0300	-	prolipoprotein diacylglyceryl transferase
300	 64.87	0	337544..338989	+	481	167644273	-	Caul_0301	-	radical SAM domain-containing protein
301	 65.02	0	338986..339228	+	80	167644274	-	Caul_0302	-	hypothetical protein
302	 67.50	0	339215..340888	-	557	167644275	-	Caul_0303	-	alpha amylase catalytic region
303	 70.42	0	340981..341940	-	319	167644276	-	Caul_0304	-	inosine/uridine-preferring nucleoside hydrolase
304	 70.35	0	341937..342587	-	216	167644277	-	Caul_0305	-	hypothetical protein
305	 74.26	+1	342698..343606	+	302	167644278	-	Caul_0306	-	ribokinase-like domain-containing protein
306	 68.10	0	343629..344888	-	419	167644279	-	Caul_0307	-	Na+ dependent nucleoside transporter
307	 67.05	0	345170..347545	+	791	167644280	-	Caul_0308	-	TonB-dependent receptor
308	 69.78	0	347677..348705	+	342	167644281	-	Caul_0309	-	LacI family transcription regulator
309	 68.59	0	348777..349814	+	345	167644282	-	Caul_0310	-	hypothetical protein
310	 70.86	0	349911..351008	-	365	167644283	-	Caul_0311	-	phospho-2-dehydro-3-deoxyheptonate aldolase
311	 65.16	0	351521..352315	+	264	167644284	-	Caul_0312	-	DeoR family transcriptional regulator
312	 67.29	0	352321..354231	-	636	167644285	-	Caul_0313	-	Alpha-galactosidase
313	 63.24	-1	354246..355355	-	369	167644286	-	Caul_0314	-	amidohydrolase 2
314	 66.47	0	355491..357575	+	694	167644287	-	Caul_0315	-	glycoside hydrolase clan GH-D
315	 65.23	0	357572..358477	+	301	167644288	-	Caul_0316	-	hypothetical protein
316	 66.82	0	358649..359947	+	432	167644289	-	Caul_0317	-	D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
317	 66.07	0	359940..361103	+	387	167644290	-	Caul_0318	-	sugar isomerase (SIS)
318	 68.81	0	361103..362080	+	325	167644291	-	Caul_0319	-	ATPase BadF/BadG/BcrA/BcrD type
319	 68.46	0	362073..362798	+	241	167644292	-	Caul_0320	-	HAD family hydrolase
320	 64.60	0	363036..365840	+	934	167644293	-	Caul_0321	-	TonB-dependent receptor
321	 67.22	0	366020..367459	+	479	167644294	-	Caul_0322	-	hypothetical protein
322	 55.47	-2	367848..369329	-	493	167644295	-	Caul_0323	-	hypothetical protein
323	 51.77	-2	369308..371281	-	657	167644296	-	Caul_0324	-	N-6 DNA methylase
324	 67.10	0	371588..372277	-	229	167644297	-	Caul_0325	-	hypothetical protein
325	 69.43	0	372287..375145	-	952	167644298	-	Caul_0326	-	Ti-type conjugative transfer relaxase TraA
326	 64.42	0	375317..375583	+	88	167644299	-	Caul_0327	-	putative conjugal transfert protein, TraC
327	 67.96	0	375567..375875	+	102	167644300	-	Caul_0328	-	conjugal transfer TraD family protein
328	 63.18	-1	375896..376411	-	171	167644301	-	Caul_0329	-	XRE family transcriptional regulator
329	 60.14	-1	376484..376759	+	91	167644302	-	Caul_0330	-	hypothetical protein
330	 66.67	0	377404..377898	-	164	167644303	-	Caul_0331	-	hypothetical protein
331	 65.50	0	377891..378232	-	113	167644304	-	Caul_0332	-	ECF subfamily RNA polymerase sigma-24 factor
332	 67.32	0	378232..378693	-	153	167644305	-	Caul_0333	-	hypothetical protein
333	 68.27	0	378690..379187	-	165	167644306	-	Caul_0334	-	hypothetical protein
334	 58.52	-2	379256..379525	+	89	167644307	-	Caul_0335	-	DNA-binding protein
335	 62.19	-1	379731..379931	+	66	167644308	-	Caul_0336	-	phage transcriptional regulator, AlpA
336	 63.45	-1	379976..380566	-	196	167644309	-	Caul_0337	-	hypothetical protein
337	 62.12	-1	380570..381031	-	153	167644310	-	Caul_0338	-	DNA binding domain-containing protein
338	 66.98	0	381331..381645	+	104	167644311	-	Caul_0339	-	transposase IS3/IS911 family protein
339	 67.83	0	381642..382502	+	286	167644312	-	Caul_0340	-	integrase catalytic region
340	 64.30	0	382624..383934	-	436	167644313	-	Caul_0341	-	integrase family protein
341	 70.78	0	384311..384772	-	153	167644314	-	Caul_0342	-	thioesterase superfamily protein
342	 72.72	+1	384864..385706	-	280	167644315	-	Caul_0343	-	beta-lactamase domain-containing protein
343	 73.09	+1	385805..386551	-	248	167644316	-	Caul_0344	-	hypothetical protein
344	 73.11	+1	386647..387702	-	351	167644317	-	Caul_0345	-	RluA family pseudouridine synthase
345	 67.30	0	387801..390311	+	836	167644318	-	Caul_0346	-	TonB-dependent receptor
346	 65.02	0	390364..390666	-	100	167644319	-	Caul_0347	-	hypothetical protein
347	 70.43	0	390744..392468	+	574	167644320	-	Caul_0348	-	alkaline phosphatase
348	 74.29	+1	392520..393149	-	209	167644321	-	Caul_0349	-	lysine exporter protein LysE/YggA
349	 70.01	0	393189..393995	-	268	167644322	-	Caul_0350	-	hypothetical protein
350	 66.67	0	394153..394557	-	134	167644323	-	Caul_0351	-	phosphoribosyl-AMP cyclohydrolase
351	 61.90	-1	394647..394940	-	97	167644324	-	Caul_0352	-	transcriptional modulator of MazE/toxin, MazF
352	 65.56	0	394958..395227	-	89	167644325	-	Caul_0353	-	transcriptional regulator/antitoxin, MazE
353	 67.58	0	395262..396800	-	512	167644326	-	Caul_0354	-	UbiD family decarboxylase
354	 69.34	0	396932..398686	+	584	167644327	-	Caul_0355	-	hypothetical protein
355	 70.18	0	398818..400608	-	596	167644328	-	Caul_0356	-	ABC transporter related
356	 72.89	+1	400629..400901	-	90	167644329	-	Caul_0357	-	hypothetical protein
357	 70.09	0	401617..401850	-	77	167644330	-	Caul_0358	-	hypothetical protein
358	 71.14	0	402074..403012	+	312	167644331	-	Caul_0359	-	4-hydroxybenzoate polyprenyl transferase
359	 68.08	0	403168..403521	-	117	167644332	-	Caul_0360	-	hypothetical protein
360	 68.08	0	403574..404566	+	330	167644333	-	Caul_0361	-	fatty acid desaturase
361	 65.51	0	404572..405003	-	143	167644334	-	Caul_0362	-	translation initiation factor 2, gamma subunit, GTPase
362	 67.56	0	405103..405774	+	223	167644335	-	Caul_0363	-	hypothetical protein
363	 67.54	0	405818..406162	+	114	167644336	-	Caul_0364	-	glyoxalase/bleomycin resistance protein/dioxygenase
364	 66.86	0	406244..406765	+	173	167644337	-	Caul_0365	-	hypothetical protein
365	 70.96	0	406866..407750	-	294	167644338	-	Caul_0366	-	NAD-dependent epimerase/dehydratase
366	 64.62	0	407797..408138	+	113	167644339	-	Caul_0367	-	hypothetical protein
367	 68.57	0	408255..409094	+	279	167644340	-	Caul_0368	-	aldo/keto reductase
368	 66.93	0	409098..409859	-	253	167644341	-	Caul_0369	-	hypothetical protein
369	 70.85	0	409906..410622	+	238	167644342	-	Caul_0370	-	hypothetical protein
370	 67.59	0	410630..411823	-	397	167644343	-	Caul_0371	-	hypothetical protein
371	 65.71	0	412119..413477	+	452	167644344	-	Caul_0372	-	glutamate--cysteine ligase
372	 66.31	0	413763..414320	-	185	167644345	-	Caul_0373	-	hypothetical protein
373	 65.07	0	414507..416390	+	627	167644346	-	Caul_0374	-	amino acid/peptide transporter
374	 65.88	0	416478..416858	+	126	167644347	-	Caul_0375	-	putative transposase of insertion sequence ISRm2011-2, orfA protein
375	 63.10	-1	416920..417423	+	167	167644348	-	Caul_0376	-	transposase and inactivated derivatives-like protein
376	 69.46	0	417519..417983	-	154	167644349	-	Caul_0377	-	hypothetical protein
377	 67.60	0	417980..418726	-	248	167644350	-	Caul_0378	-	hydroxyacylglutathione hydrolase
378	 71.58	0	418808..419641	+	277	167644351	-	Caul_0379	-	methyltransferase type 11
379	 67.83	0	419656..420000	+	114	167644352	-	Caul_0380	-	nitrogen regulatory protein P-II
380	 68.98	0	420005..421561	-	518	167644353	-	Caul_0381	-	major facilitator transporter
381	 67.97	0	421654..423186	+	510	167644354	-	Caul_0382	-	phospholipase D/transphosphatidylase
382	 66.17	0	423119..423919	-	266	167644355	-	Caul_0383	-	endonuclease/exonuclease/phosphatase
383	 70.55	0	423916..424584	-	222	167644356	-	Caul_0384	-	methionine biosynthesis protein MetW
384	 68.40	0	424650..425801	-	383	167644357	-	Caul_0385	-	homoserine O-acetyltransferase
385	 70.96	0	425879..426391	+	170	167644358	-	Caul_0386	-	putative phosphohistidine phosphatase, SixA
386	 66.96	0	426388..426732	+	114	167644359	-	Caul_0387	-	hypothetical protein
387	 70.61	0	426729..427793	+	354	167644360	-	Caul_0388	-	dihydroorotate dehydrogenase 2
388	 68.43	0	427790..428527	+	245	167644361	-	Caul_0389	-	SNARE associated Golgi protein
389	 70.44	0	428537..430045	+	502	167644362	-	Caul_0390	-	integral membrane sensor signal transduction histidine kinase
390	 70.22	0	430098..431816	-	572	167644363	-	Caul_0391	-	gamma-glutamyltransferase
391	 58.90	-2	432277..432585	+	102	167644364	-	Caul_0392	-	hypothetical protein
392	 54.55	-2	432971..433300	+	109	167644365	-	Caul_0393	-	hypothetical protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.