IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3192	 66.67	0	3464020..3464130	-	36	167647165	-	Caul_3203	-	hypothetical protein
3193	 69.81	0	3464289..3464924	+	211	167647166	-	Caul_3204	-	TetR family transcriptional regulator
3194	 73.69	+1	3465018..3465857	+	279	167647167	-	Caul_3205	-	glutamyl-Q tRNA(Asp) synthetase
3195	 70.87	0	3465947..3467374	+	475	167647168	-	Caul_3206	-	TAP domain-containing protein
3196	 64.90	0	3468661..3469734	-	357	167647169	-	Caul_3207	-	beta-lactamase
3197	 74.76	+1	3470519..3471259	-	246	167647170	-	Caul_3208	-	GCN5-related N-acetyltransferase
3198	 64.22	0	3471332..3471535	-	67	167647171	-	Caul_3209	-	cold-shock DNA-binding domain-containing protein
3199	 66.98	0	3471709..3472338	-	209	167647172	-	Caul_3210	-	redoxin domain-containing protein
3200	 68.57	0	3472396..3473763	+	455	167647173	-	Caul_3211	-	argininosuccinate lyase
3201	 75.49	+2	3473760..3474065	+	101	167647174	-	Caul_3212	-	hypothetical protein
3202	 68.90	0	3474188..3475486	+	432	167647175	-	Caul_3213	-	diaminopimelate decarboxylase
3203	 71.04	0	3475594..3477192	+	532	167647176	-	Caul_3214	-	methyl-accepting chemotaxis sensory transducer
3204	 70.31	0	3477311..3477886	-	191	167647177	-	Caul_3215	-	phosphoribosyltransferase
3205	 70.33	0	3477852..3478778	-	308	167647178	-	Caul_3216	-	Zinc finger-domain-containing protein
3206	 67.69	0	3478836..3479618	+	260	167647179	-	Caul_3217	-	cell division ATP-binding protein FtsE
3207	 73.38	+1	3479615..3480508	+	297	167647180	-	Caul_3218	-	hypothetical protein
3208	 66.99	0	3480505..3481128	+	207	167647181	-	Caul_3219	-	hypothetical protein
3209	 67.09	0	3481125..3481835	+	236	167647182	-	Caul_3220	-	phospholipid/glycerol acyltransferase
3210	 65.98	0	3481976..3482557	-	193	167647183	-	Caul_3221	-	aspartyl/asparaginyl beta-hydroxylase
3211	 71.23	0	3482612..3483772	+	386	167647184	-	Caul_3222	-	aspartyl/asparaginyl beta-hydroxylase
3212	 67.70	0	3483878..3484456	-	192	167647185	-	Caul_3223	-	ChaC family protein
3213	 71.02	0	3484486..3485496	+	336	167647186	-	Caul_3224	-	hypothetical protein
3214	 65.73	0	3485513..3485833	-	106	167647187	-	Caul_3225	-	XRE family plasmid maintenance system antidote protein
3215	 63.19	-1	3485867..3486154	-	95	167647188	-	Caul_3226	-	plasmid maintenance system killer
3216	 73.41	+1	3486387..3487187	+	266	167647189	-	Caul_3227	-	hypothetical protein
3217	 68.79	0	3487393..3488520	+	375	167647190	-	Caul_3228	-	histidinol-phosphate aminotransferase
3218	 68.90	0	3488654..3489592	+	312	167647191	-	Caul_3229	-	cyclohexadienyl dehydrogenase
3219	 69.00	0	3489692..3489991	+	99	167647192	-	Caul_3230	-	signal transduction protein
3220	 60.99	-1	3490101..3490505	+	134	167647193	-	Caul_3231	-	ketosteroid isomerase-like protein
3221	 63.75	-1	3490599..3490907	-	102	167647194	-	Caul_3232	-	hypothetical protein
3222	 64.06	0	3491071..3491415	-	114	167647195	-	Caul_3233	-	hypothetical protein
3223	 70.31	0	3491711..3493741	+	676	167647196	-	Caul_3234	-	glucosyltransferase MdoH
3224	 70.26	0	3493819..3494736	+	305	167647197	-	Caul_3235	-	hypothetical protein
3225	 67.00	0	3494994..3496487	-	497	167647198	-	Caul_3236	-	carboxylesterase type B
3226	 66.55	0	3496489..3497313	-	274	167647199	-	Caul_3237	-	short chain dehydrogenase
3227	 65.90	0	3497409..3498326	+	305	167647200	-	Caul_3238	-	LysR family transcriptional regulator
3228	 68.09	0	3498783..3499979	-	398	167647201	-	Caul_3239	-	acetyl-CoA acetyltransferase
3229	 69.82	0	3499991..3501448	-	485	167647202	-	Caul_3240	-	hypothetical protein
3230	 67.76	0	3501445..3502356	-	303	167647203	-	Caul_3241	-	short-chain dehydrogenase/reductase SDR
3231	 67.00	0	3502507..3503412	+	301	167647204	-	Caul_3242	-	LysR family transcriptional regulator
3232	 66.50	0	3503570..3505927	-	785	167647205	-	Caul_3243	-	TonB-dependent receptor
3233	 70.59	0	3506283..3507761	+	492	167647206	-	Caul_3244	-	aldehyde dehydrogenase
3234	 69.43	0	3507830..3509455	-	541	167647207	-	Caul_3245	-	glucose-methanol-choline oxidoreductase
3235	 68.01	0	3509529..3510572	-	347	167647208	-	Caul_3246	-	vanillate monooxygenase
3236	 66.27	0	3511019..3512512	+	497	167647209	-	Caul_3247	-	AMP-dependent synthetase and ligase
3237	 69.15	0	3512638..3513441	+	267	167647210	-	Caul_3248	-	enoyl-CoA hydratase/isomerase
3238	 67.18	0	3513489..3514265	+	258	167647211	-	Caul_3249	-	short-chain dehydrogenase/reductase SDR
3239	 67.67	0	3514359..3515660	-	433	167647212	-	Caul_3250	-	major facilitator transporter
3240	 69.20	0	3515922..3517619	-	565	167647213	-	Caul_3251	-	tannase and feruloyl esterase
3241	 65.54	0	3517697..3520093	-	798	167647214	-	Caul_3252	-	TonB-dependent receptor plug
3242	 70.95	0	3520350..3521726	-	458	167647215	-	Caul_3253	-	MATE efflux family protein
3243	 67.39	0	3522057..3522890	+	277	167647216	-	Caul_3254	-	flagellin domain-containing protein
3244	 68.94	0	3522926..3523321	+	131	167647217	-	Caul_3255	-	glyoxalase/bleomycin resistance protein/dioxygenase
3245	 70.36	0	3523325..3524380	+	351	167647218	-	Caul_3256	-	hypothetical protein
3246	 75.17	+1	3524388..3524963	-	191	167647219	-	Caul_3257	-	hypothetical protein
3247	 71.84	+1	3524960..3525307	-	115	167647220	-	Caul_3258	-	hypothetical protein
3248	 65.43	0	3525444..3525767	+	107	167647221	-	Caul_3259	-	hypothetical protein
3249	 70.92	0	3525764..3526210	-	148	167647222	-	Caul_3260	-	NUDIX hydrolase
3250	 66.67	0	3526216..3527262	-	348	167647223	-	Caul_3261	-	hypothetical protein
3251	 66.67	0	3527627..3528121	+	164	167647224	-	Caul_3262	-	3D domain-containing protein
3252	 65.96	0	3528186..3528611	-	141	167647225	-	Caul_3263	-	response regulator receiver protein
3253	 65.64	0	3528611..3529000	-	129	167647226	-	Caul_3264	-	hypothetical protein
3254	 70.91	0	3529109..3529885	-	258	167647227	-	Caul_3265	-	phosphoadenosine phosphosulfate reductase
3255	 69.36	0	3529885..3530403	-	172	167647228	-	Caul_3266	-	hypothetical protein
3256	 66.97	0	3530387..3532045	-	552	167647229	-	Caul_3267	-	nitrite/sulfite reductase hemoprotein beta subunit
3257	 69.40	0	3532051..3532416	-	121	167647230	-	Caul_3268	-	hypothetical protein
3258	 71.49	0	3532413..3533366	-	317	167647231	-	Caul_3269	-	uroporphyrin-III C-methyltransferase
3259	 70.53	0	3533588..3534544	+	318	167647232	-	Caul_3270	-	LysR family transcriptional regulator
3260	 68.18	0	3534551..3534880	+	109	167647233	-	Caul_3271	-	chorismate mutase
3261	 68.84	0	3535055..3535882	-	275	167647234	-	Caul_3272	-	hypothetical protein
3262	 66.96	0	3536126..3536464	-	112	167647235	-	Caul_3273	-	hypothetical protein
3263	 67.83	0	3537108..3537968	-	286	167647236	-	Caul_3274	-	integrase catalytic region
3264	 66.67	0	3537965..3538279	-	104	167647237	-	Caul_3275	-	transposase IS3/IS911 family protein
3265	 64.34	0	3538344..3539549	+	401	167647238	-	Caul_3276	-	carbohydrate-binding family 6 protein
3266	 65.64	0	3539579..3542503	+	974	167647239	-	Caul_3277	-	glycoside hydrolase family protein
3267	 65.06	0	3543259..3544815	-	518	167647240	-	Caul_3278	-	tryptophan halogenase
3268	 70.97	0	3544868..3546937	-	689	167647241	-	Caul_3279	-	putative lipoprotein
3269	 64.57	0	3547012..3549783	-	923	167647242	-	Caul_3280	-	TonB-dependent receptor
3270	 70.24	0	3549892..3550842	-	316	167647243	-	Caul_3281	-	anti-FecI sigma factor, FecR
3271	 65.81	0	3550817..3551401	-	194	167647244	-	Caul_3282	-	ECF subfamily RNA polymerase sigma-24 factor
3272	 71.08	0	3551646..3552575	-	309	167647245	-	Caul_3283	-	esterase/lipase-like protein
3273	 69.76	0	3552572..3552991	-	139	167647246	-	Caul_3284	-	signal transduction protein
3274	 71.81	+1	3553063..3553470	-	135	167647247	-	Caul_3285	-	hypothetical protein
3275	 72.92	+1	3553627..3554346	+	239	167647248	-	Caul_3286	-	two component transcriptional regulator
3276	 72.36	+1	3554349..3555788	+	479	167647249	-	Caul_3287	-	integral membrane sensor signal transduction histidine kinase
3277	 67.99	0	3556015..3558207	-	730	167647250	-	Caul_3288	-	Beta-glucosidase
3278	 64.22	0	3558401..3561175	-	924	167647251	-	Caul_3289	-	TonB-dependent receptor
3279	 67.60	0	3561450..3563486	-	678	167647252	-	Caul_3290	-	putative D-(-)-3-hydroxybutyrate oligomer hydrolase
3280	 64.22	0	3563479..3563805	-	108	167647253	-	Caul_3291	-	hypothetical protein
3281	 69.98	0	3563802..3565160	-	452	167647254	-	Caul_3292	-	hypothetical protein
3282	 68.04	0	3565157..3566464	-	435	167647255	-	Caul_3293	-	CitMHS family citrate/H+ symporter
3283	 64.97	0	3566610..3567494	-	294	167647256	-	Caul_3294	-	LysR family transcriptional regulator
3284	 66.41	0	3567735..3568502	-	255	167647257	-	Caul_3295	-	hypothetical protein
3285	 61.24	-1	3569063..3569320	-	85	167647258	-	Caul_3296	-	transglycosylase-associated protein
3286	 68.88	0	3569529..3570611	-	360	167647259	-	Caul_3297	-	hypothetical protein
3287	 67.57	0	3570748..3573516	-	922	167647260	-	Caul_3298	-	PAS/PAC sensor hybrid histidine kinase
3288	 65.09	0	3573560..3574195	-	211	167647261	-	Caul_3299	-	CheC, inhibitor of MCP methylation
3289	 67.19	0	3574192..3574575	-	127	167647262	-	Caul_3300	-	response regulator receiver protein
3290	 68.95	0	3574881..3576803	-	640	167647263	-	Caul_3301	-	CheA signal transduction histidine kinase
3291	 63.52	-1	3576800..3577624	-	274	167647264	-	Caul_3302	-	MCP methyltransferase, CheR-type
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.