IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3154	 70.83	0	3432148..3432723	-	191	167647127	-	Caul_3165	-	ThiJ/PfpI domain-containing protein
3155	 68.50	0	3432849..3433340	+	163	167647128	-	Caul_3166	-	methionine sulfoxide reductase B
3156	 69.54	0	3433352..3433768	-	138	167647129	-	Caul_3167	-	hypothetical protein
3157	 66.67	0	3433859..3433963	-	34	167647130	-	Caul_3168	-	hypothetical protein
3158	 73.15	+1	3433960..3434391	-	143	167647131	-	Caul_3169	-	hypothetical protein
3159	 64.55	0	3435212..3436108	+	298	167647132	-	Caul_3170	-	alpha/beta hydrolase fold
3160	 70.99	0	3436227..3437012	-	261	167647133	-	Caul_3171	-	hypothetical protein
3161	 63.56	-1	3437142..3437495	+	117	167647134	-	Caul_3172	-	hypothetical protein
3162	 59.60	-2	3437545..3437898	-	117	167647135	-	Caul_3173	-	hypothetical protein
3163	 74.26	+1	3437992..3439071	-	359	167647136	-	Caul_3174	-	hypothetical protein
3164	 66.34	0	3439154..3440989	-	611	167647137	-	Caul_3175	-	thiamine biosynthesis protein ThiC
3165	 67.63	0	3441276..3441794	+	172	167647138	-	Caul_3176	-	endoribonuclease L-PSP
3166	 69.60	0	3441796..3442647	-	283	167647139	-	Caul_3177	-	protein of unknown function zinc metallopeptidase putative
3167	 70.99	0	3442738..3443130	-	130	167647140	-	Caul_3178	-	hypothetical protein
3168	 66.84	0	3443181..3443744	-	187	167647141	-	Caul_3179	-	TPR repeat-containing protein
3169	 69.76	0	3443909..3444910	+	333	167647142	-	Caul_3180	-	D-cysteine desulfhydrase
3170	 68.78	0	3444903..3445565	+	220	167647143	-	Caul_3181	-	aspartate racemase
3171	 72.80	+1	3445575..3446243	+	222	167647144	-	Caul_3182	-	hypothetical protein
3172	 65.35	0	3446334..3447776	+	480	167647145	-	Caul_3183	-	M6 family peptidase
3173	 69.21	0	3447790..3448419	-	209	167647146	-	Caul_3184	-	uracil phosphoribosyltransferase
3174	 64.75	0	3448510..3449136	-	208	167647147	-	Caul_3185	-	TetR family transcriptional regulator
3175	 71.11	0	3449198..3450706	+	502	167647148	-	Caul_3186	-	RND efflux system outer membrane lipoprotein
3176	 70.92	0	3450759..3451886	+	375	167647149	-	Caul_3187	-	secretion protein HlyD family protein
3177	 66.99	0	3451921..3453486	+	521	167647150	-	Caul_3188	-	EmrB/QacA family drug resistance transporter
3178	 74.31	+1	3453850..3454869	+	339	167647151	-	Caul_3189	-	peptidase S58 DmpA
3179	 73.11	+1	3454824..3455351	-	175	167647152	-	Caul_3190	-	MarR family transcriptional regulator
3180	 66.28	0	3455551..3456318	-	255	167647153	-	Caul_3191	-	hypothetical protein
3181	 66.29	0	3456447..3456713	-	88	167647154	-	Caul_3192	-	hypothetical protein
3182	 64.48	0	3456796..3456978	+	60	167647155	-	Caul_3193	-	hypothetical protein
3183	 71.39	0	3456985..3457407	-	140	167647156	-	Caul_3194	-	hypothetical protein
3184	 66.67	0	3457413..3457667	-	84	167647157	-	Caul_3195	-	glutathione peroxidase
3185	 65.67	0	3457828..3458430	+	200	167647158	-	Caul_3196	-	DedA family protein
3186	 71.12	0	3458427..3459032	+	201	167647159	-	Caul_3197	-	hypothetical protein
3187	 68.63	0	3459034..3459594	+	186	167647160	-	Caul_3198	-	ubiquinone biosynthesis protein COQ7
3188	 65.19	0	3459669..3461498	+	609	167647161	-	Caul_3199	-	peptidase M1 membrane alanine aminopeptidase
3189	 72.41	+1	3461659..3462198	+	179	167647162	-	Caul_3200	-	hypothetical protein
3190	 66.13	0	3462543..3463103	-	186	167647163	-	Caul_3201	-	HNH endonuclease
3191	 72.84	+1	3463280..3463765	-	161	167647164	-	Caul_3202	-	transcription elongation factor regulatory protein
3192	 66.67	0	3464020..3464130	-	36	167647165	-	Caul_3203	-	hypothetical protein
3193	 69.81	0	3464289..3464924	+	211	167647166	-	Caul_3204	-	TetR family transcriptional regulator
3194	 73.69	+1	3465018..3465857	+	279	167647167	-	Caul_3205	-	glutamyl-Q tRNA(Asp) synthetase
3195	 70.87	0	3465947..3467374	+	475	167647168	-	Caul_3206	-	TAP domain-containing protein
3196	 64.90	0	3468661..3469734	-	357	167647169	-	Caul_3207	-	beta-lactamase
3197	 74.76	+1	3470519..3471259	-	246	167647170	-	Caul_3208	-	GCN5-related N-acetyltransferase
3198	 64.22	0	3471332..3471535	-	67	167647171	-	Caul_3209	-	cold-shock DNA-binding domain-containing protein
3199	 66.98	0	3471709..3472338	-	209	167647172	-	Caul_3210	-	redoxin domain-containing protein
3200	 68.57	0	3472396..3473763	+	455	167647173	-	Caul_3211	-	argininosuccinate lyase
3201	 75.49	+2	3473760..3474065	+	101	167647174	-	Caul_3212	-	hypothetical protein
3202	 68.90	0	3474188..3475486	+	432	167647175	-	Caul_3213	-	diaminopimelate decarboxylase
3203	 71.04	0	3475594..3477192	+	532	167647176	-	Caul_3214	-	methyl-accepting chemotaxis sensory transducer
3204	 70.31	0	3477311..3477886	-	191	167647177	-	Caul_3215	-	phosphoribosyltransferase
3205	 70.33	0	3477852..3478778	-	308	167647178	-	Caul_3216	-	Zinc finger-domain-containing protein
3206	 67.69	0	3478836..3479618	+	260	167647179	-	Caul_3217	-	cell division ATP-binding protein FtsE
3207	 73.38	+1	3479615..3480508	+	297	167647180	-	Caul_3218	-	hypothetical protein
3208	 66.99	0	3480505..3481128	+	207	167647181	-	Caul_3219	-	hypothetical protein
3209	 67.09	0	3481125..3481835	+	236	167647182	-	Caul_3220	-	phospholipid/glycerol acyltransferase
3210	 65.98	0	3481976..3482557	-	193	167647183	-	Caul_3221	-	aspartyl/asparaginyl beta-hydroxylase
3211	 71.23	0	3482612..3483772	+	386	167647184	-	Caul_3222	-	aspartyl/asparaginyl beta-hydroxylase
3212	 67.70	0	3483878..3484456	-	192	167647185	-	Caul_3223	-	ChaC family protein
3213	 71.02	0	3484486..3485496	+	336	167647186	-	Caul_3224	-	hypothetical protein
3214	 65.73	0	3485513..3485833	-	106	167647187	-	Caul_3225	-	XRE family plasmid maintenance system antidote protein
3215	 63.19	-1	3485867..3486154	-	95	167647188	-	Caul_3226	-	plasmid maintenance system killer
3216	 73.41	+1	3486387..3487187	+	266	167647189	-	Caul_3227	-	hypothetical protein
3217	 68.79	0	3487393..3488520	+	375	167647190	-	Caul_3228	-	histidinol-phosphate aminotransferase
3218	 68.90	0	3488654..3489592	+	312	167647191	-	Caul_3229	-	cyclohexadienyl dehydrogenase
3219	 69.00	0	3489692..3489991	+	99	167647192	-	Caul_3230	-	signal transduction protein
3220	 60.99	-1	3490101..3490505	+	134	167647193	-	Caul_3231	-	ketosteroid isomerase-like protein
3221	 63.75	-1	3490599..3490907	-	102	167647194	-	Caul_3232	-	hypothetical protein
3222	 64.06	0	3491071..3491415	-	114	167647195	-	Caul_3233	-	hypothetical protein
3223	 70.31	0	3491711..3493741	+	676	167647196	-	Caul_3234	-	glucosyltransferase MdoH
3224	 70.26	0	3493819..3494736	+	305	167647197	-	Caul_3235	-	hypothetical protein
3225	 67.00	0	3494994..3496487	-	497	167647198	-	Caul_3236	-	carboxylesterase type B
3226	 66.55	0	3496489..3497313	-	274	167647199	-	Caul_3237	-	short chain dehydrogenase
3227	 65.90	0	3497409..3498326	+	305	167647200	-	Caul_3238	-	LysR family transcriptional regulator
3228	 68.09	0	3498783..3499979	-	398	167647201	-	Caul_3239	-	acetyl-CoA acetyltransferase
3229	 69.82	0	3499991..3501448	-	485	167647202	-	Caul_3240	-	hypothetical protein
3230	 67.76	0	3501445..3502356	-	303	167647203	-	Caul_3241	-	short-chain dehydrogenase/reductase SDR
3231	 67.00	0	3502507..3503412	+	301	167647204	-	Caul_3242	-	LysR family transcriptional regulator
3232	 66.50	0	3503570..3505927	-	785	167647205	-	Caul_3243	-	TonB-dependent receptor
3233	 70.59	0	3506283..3507761	+	492	167647206	-	Caul_3244	-	aldehyde dehydrogenase
3234	 69.43	0	3507830..3509455	-	541	167647207	-	Caul_3245	-	glucose-methanol-choline oxidoreductase
3235	 68.01	0	3509529..3510572	-	347	167647208	-	Caul_3246	-	vanillate monooxygenase
3236	 66.27	0	3511019..3512512	+	497	167647209	-	Caul_3247	-	AMP-dependent synthetase and ligase
3237	 69.15	0	3512638..3513441	+	267	167647210	-	Caul_3248	-	enoyl-CoA hydratase/isomerase
3238	 67.18	0	3513489..3514265	+	258	167647211	-	Caul_3249	-	short-chain dehydrogenase/reductase SDR
3239	 67.67	0	3514359..3515660	-	433	167647212	-	Caul_3250	-	major facilitator transporter
3240	 69.20	0	3515922..3517619	-	565	167647213	-	Caul_3251	-	tannase and feruloyl esterase
3241	 65.54	0	3517697..3520093	-	798	167647214	-	Caul_3252	-	TonB-dependent receptor plug
3242	 70.95	0	3520350..3521726	-	458	167647215	-	Caul_3253	-	MATE efflux family protein
3243	 67.39	0	3522057..3522890	+	277	167647216	-	Caul_3254	-	flagellin domain-containing protein
3244	 68.94	0	3522926..3523321	+	131	167647217	-	Caul_3255	-	glyoxalase/bleomycin resistance protein/dioxygenase
3245	 70.36	0	3523325..3524380	+	351	167647218	-	Caul_3256	-	hypothetical protein
3246	 75.17	+1	3524388..3524963	-	191	167647219	-	Caul_3257	-	hypothetical protein
3247	 71.84	+1	3524960..3525307	-	115	167647220	-	Caul_3258	-	hypothetical protein
3248	 65.43	0	3525444..3525767	+	107	167647221	-	Caul_3259	-	hypothetical protein
3249	 70.92	0	3525764..3526210	-	148	167647222	-	Caul_3260	-	NUDIX hydrolase
3250	 66.67	0	3526216..3527262	-	348	167647223	-	Caul_3261	-	hypothetical protein
3251	 66.67	0	3527627..3528121	+	164	167647224	-	Caul_3262	-	3D domain-containing protein
3252	 65.96	0	3528186..3528611	-	141	167647225	-	Caul_3263	-	response regulator receiver protein
3253	 65.64	0	3528611..3529000	-	129	167647226	-	Caul_3264	-	hypothetical protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.