IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3086	 69.44	0	3358589..3360967	-	792	167647059	-	Caul_3097	-	DNA ligase, NAD-dependent
3087	 70.24	0	3361653..3362771	+	372	167647060	-	Caul_3098	-	acyltransferase 3
3088	 73.75	+1	3362929..3364623	-	564	167647061	-	Caul_3099	-	DNA repair protein RecN
3089	 64.39	0	3364764..3365684	-	306	167647062	-	Caul_3100	-	outer membrane assembly lipoprotein YfiO
3090	 68.90	0	3365883..3366779	-	298	167647063	-	Caul_3101	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
3091	 67.14	0	3367069..3369171	+	700	167647064	-	Caul_3102	-	peptidase S9 prolyl oligopeptidase
3092	 68.08	0	3369232..3370296	+	354	167647065	-	Caul_3103	-	hypothetical protein
3093	 74.09	+1	3370381..3371121	-	246	167647066	-	Caul_3104	-	hypothetical protein
3094	 62.93	-1	3371302..3371916	-	204	167647067	-	Caul_3105	-	hypothetical protein
3095	 72.55	+1	3372107..3372463	-	118	167647068	-	Caul_3106	-	hypothetical protein
3096	 66.14	0	3372463..3373413	-	316	167647069	-	Caul_3107	-	protein-export membrane protein SecF
3097	 67.10	0	3373422..3375020	-	532	167647070	-	Caul_3108	-	preprotein translocase subunit SecD
3098	 65.37	0	3375094..3375402	-	102	167647071	-	Caul_3109	-	preprotein translocase, YajC subunit
3099	 69.88	0	3375525..3376364	+	279	167647072	-	Caul_3110	-	hypothetical protein
3100	 68.78	0	3376383..3376619	+	78	167647073	-	Caul_3111	-	hypothetical protein
3101	 71.45	0	3376799..3378700	-	633	167647074	-	Caul_3112	-	peptidase M23B
3102	 68.04	0	3378812..3379468	-	218	167647075	-	Caul_3113	-	protein-L-isoaspartate O-methyltransferase
3103	 67.90	0	3379468..3380277	-	269	167647076	-	Caul_3114	-	stationary phase survival protein SurE
3104	 67.30	0	3380447..3381871	-	474	167647077	-	Caul_3115	-	seryl-tRNA synthetase
3105	 72.26	+1	3382237..3382701	+	154	167647078	-	Caul_3116	-	hypothetical protein
3106	 64.23	0	3382884..3383786	-	300	167647079	-	Caul_3117	-	Sec-independent protein translocase, TatC subunit
3107	 67.89	0	3383783..3384355	-	190	167647080	-	Caul_3118	-	twin-arginine translocation protein, TatB subunit
3108	 62.67	-1	3384451..3384675	-	74	167647081	-	Caul_3119	-	twin arginine-targeting protein translocase
3109	 71.12	0	3384792..3385442	-	216	167647082	-	Caul_3120	-	segregation and condensation protein B
3110	 70.30	0	3385564..3386388	-	274	167647083	-	Caul_3121	-	chromosome segregation and condensation protein ScpA
3111	 69.01	0	3386385..3387410	-	341	167647084	-	Caul_3122	-	Beta-N-acetylhexosaminidase
3112	 74.70	+1	3387424..3388245	-	273	167647085	-	Caul_3123	-	sporulation domain-containing protein
3113	 66.75	0	3388378..3389562	-	394	167647086	-	Caul_3124	-	deoxyguanosinetriphosphate triphosphohydrolase
3114	 66.97	0	3389641..3389973	+	110	167647087	-	Caul_3125	-	iron-sulfur cluster assembly accessory protein
3115	 69.32	0	3390514..3390852	-	112	167647088	-	Caul_3126	-	hypothetical protein
3116	 65.40	0	3390888..3391676	+	262	167647089	-	Caul_3127	-	exodeoxyribonuclease III Xth
3117	 71.68	+1	3391734..3392591	+	285	167647090	-	Caul_3128	-	hypothetical protein
3118	 72.57	+1	3392654..3392992	+	112	167647091	-	Caul_3129	-	hypothetical protein
3119	 68.36	0	3393008..3393655	-	215	167647092	-	Caul_3130	-	lysine exporter protein LysE/YggA
3120	 70.19	0	3393664..3395394	-	576	167647093	-	Caul_3131	-	dihydroxy-acid dehydratase
3121	 66.54	0	3395665..3397257	+	530	167647094	-	Caul_3132	-	xylan 1,4-beta-xylosidase
3122	 70.47	0	3397297..3398217	-	306	167647095	-	Caul_3133	-	oxidoreductase domain-containing protein
3123	 66.18	0	3398332..3399357	+	341	167647096	-	Caul_3134	-	alcohol dehydrogenase
3124	 55.45	-2	3399741..3400070	+	109	167647097	-	Caul_3135	-	ATP-dependent Clp protease adaptor protein ClpS
3125	 64.99	0	3400082..3402403	+	773	167647098	-	Caul_3136	-	ATP-dependent Clp protease, ATP-binding subunit clpA
3126	 66.67	0	3402514..3402846	+	110	167647099	-	Caul_3137	-	hypothetical protein
3127	 68.31	0	3402897..3404540	+	547	167647100	-	Caul_3138	-	Na+/H+ antiporter
3128	 64.81	0	3404586..3405017	-	143	167647101	-	Caul_3139	-	histidine triad (HIT) protein
3129	 69.81	0	3405095..3405667	+	190	167647102	-	Caul_3140	-	hypothetical protein
3130	 64.40	0	3405720..3406205	+	161	167647103	-	Caul_3141	-	general stress protein
3131	 67.87	0	3406346..3407506	-	386	167647104	-	Caul_3142	-	hypothetical protein
3132	 67.18	0	3407503..3408276	-	257	167647105	-	Caul_3143	-	glycerophosphoryl diester phosphodiesterase
3133	 64.92	0	3408276..3408734	-	152	167647106	-	Caul_3144	-	endoribonuclease L-PSP
3134	 65.98	0	3408859..3409293	-	144	167647107	-	Caul_3145	-	phasin family protein
3135	 68.81	0	3409598..3410905	+	435	167647108	-	Caul_3146	-	Serine-type D-Ala-D-Ala carboxypeptidase
3136	 70.89	0	3411010..3411435	-	141	167647109	-	Caul_3147	-	heat shock protein DnaJ domain-containing protein
3137	 68.10	0	3411467..3412303	-	278	167647110	-	Caul_3148	-	ATPase MipZ
3138	 70.10	0	3412486..3413358	+	290	167647111	-	Caul_3149	-	pantoate--beta-alanine ligase
3139	 66.92	0	3413505..3413906	-	133	167647112	-	Caul_3150	-	hypothetical protein
3140	 70.31	0	3414085..3416058	-	657	167647113	-	Caul_3151	-	carbamoyl-phosphate synthase L chain ATP-binding
3141	 64.81	0	3416082..3417482	-	466	167647114	-	Caul_3152	-	hypothetical protein
3142	 70.00	0	3417501..3418340	-	279	167647115	-	Caul_3153	-	enoyl-CoA hydratase/isomerase
3143	 68.03	0	3418453..3420060	-	535	167647116	-	Caul_3154	-	propionyl-CoA carboxylase
3144	 69.56	0	3420153..3421952	+	599	167647117	-	Caul_3155	-	cyclic nucleotide-binding protein
3145	 68.85	0	3421930..3422706	-	258	167647118	-	Caul_3156	-	trans-aconitate 2-methyltransferase
3146	 66.84	0	3423342..3424508	-	388	167647119	-	Caul_3157	-	acyl-CoA dehydrogenase domain-containing protein
3147	 69.22	0	3424574..3425827	-	417	167647120	-	Caul_3158	-	glycoside hydrolase family protein
3148	 67.62	0	3426045..3427514	-	489	167647121	-	Caul_3159	-	magnesium transporter
3149	 65.87	0	3427901..3428152	-	83	167647122	-	Caul_3160	-	hypothetical protein
3150	 69.42	0	3428223..3428948	+	241	167647123	-	Caul_3161	-	lipoyltransferase
3151	 67.15	0	3428945..3429355	-	136	167647124	-	Caul_3162	-	hypothetical protein
3152	 67.86	0	3429419..3431428	-	669	167647125	-	Caul_3163	-	carbamoyl-phosphate synthase L chain ATP-binding
3153	 73.85	+1	3431639..3432139	+	166	167647126	-	Caul_3164	-	hypothetical protein
3154	 70.83	0	3432148..3432723	-	191	167647127	-	Caul_3165	-	ThiJ/PfpI domain-containing protein
3155	 68.50	0	3432849..3433340	+	163	167647128	-	Caul_3166	-	methionine sulfoxide reductase B
3156	 69.54	0	3433352..3433768	-	138	167647129	-	Caul_3167	-	hypothetical protein
3157	 66.67	0	3433859..3433963	-	34	167647130	-	Caul_3168	-	hypothetical protein
3158	 73.15	+1	3433960..3434391	-	143	167647131	-	Caul_3169	-	hypothetical protein
3159	 64.55	0	3435212..3436108	+	298	167647132	-	Caul_3170	-	alpha/beta hydrolase fold
3160	 70.99	0	3436227..3437012	-	261	167647133	-	Caul_3171	-	hypothetical protein
3161	 63.56	-1	3437142..3437495	+	117	167647134	-	Caul_3172	-	hypothetical protein
3162	 59.60	-2	3437545..3437898	-	117	167647135	-	Caul_3173	-	hypothetical protein
3163	 74.26	+1	3437992..3439071	-	359	167647136	-	Caul_3174	-	hypothetical protein
3164	 66.34	0	3439154..3440989	-	611	167647137	-	Caul_3175	-	thiamine biosynthesis protein ThiC
3165	 67.63	0	3441276..3441794	+	172	167647138	-	Caul_3176	-	endoribonuclease L-PSP
3166	 69.60	0	3441796..3442647	-	283	167647139	-	Caul_3177	-	protein of unknown function zinc metallopeptidase putative
3167	 70.99	0	3442738..3443130	-	130	167647140	-	Caul_3178	-	hypothetical protein
3168	 66.84	0	3443181..3443744	-	187	167647141	-	Caul_3179	-	TPR repeat-containing protein
3169	 69.76	0	3443909..3444910	+	333	167647142	-	Caul_3180	-	D-cysteine desulfhydrase
3170	 68.78	0	3444903..3445565	+	220	167647143	-	Caul_3181	-	aspartate racemase
3171	 72.80	+1	3445575..3446243	+	222	167647144	-	Caul_3182	-	hypothetical protein
3172	 65.35	0	3446334..3447776	+	480	167647145	-	Caul_3183	-	M6 family peptidase
3173	 69.21	0	3447790..3448419	-	209	167647146	-	Caul_3184	-	uracil phosphoribosyltransferase
3174	 64.75	0	3448510..3449136	-	208	167647147	-	Caul_3185	-	TetR family transcriptional regulator
3175	 71.11	0	3449198..3450706	+	502	167647148	-	Caul_3186	-	RND efflux system outer membrane lipoprotein
3176	 70.92	0	3450759..3451886	+	375	167647149	-	Caul_3187	-	secretion protein HlyD family protein
3177	 66.99	0	3451921..3453486	+	521	167647150	-	Caul_3188	-	EmrB/QacA family drug resistance transporter
3178	 74.31	+1	3453850..3454869	+	339	167647151	-	Caul_3189	-	peptidase S58 DmpA
3179	 73.11	+1	3454824..3455351	-	175	167647152	-	Caul_3190	-	MarR family transcriptional regulator
3180	 66.28	0	3455551..3456318	-	255	167647153	-	Caul_3191	-	hypothetical protein
3181	 66.29	0	3456447..3456713	-	88	167647154	-	Caul_3192	-	hypothetical protein
3182	 64.48	0	3456796..3456978	+	60	167647155	-	Caul_3193	-	hypothetical protein
3183	 71.39	0	3456985..3457407	-	140	167647156	-	Caul_3194	-	hypothetical protein
3184	 66.67	0	3457413..3457667	-	84	167647157	-	Caul_3195	-	glutathione peroxidase
3185	 65.67	0	3457828..3458430	+	200	167647158	-	Caul_3196	-	DedA family protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.