IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2962	 69.94	0	3229372..3231903	+	843	167646935	-	Caul_2973	-	magnesium-translocating P-type ATPase
2963	 68.79	0	3232045..3232845	-	266	167646936	-	Caul_2974	-	UspA domain-containing protein
2964	 67.42	0	3233120..3233782	+	220	167646937	-	Caul_2975	-	Crp/FNR family transcriptional regulator
2965	 68.42	0	3233966..3234421	-	151	167646938	-	Caul_2976	-	hypothetical protein
2966	 74.30	+1	3234496..3235701	+	401	167646939	-	Caul_2977	-	RND family efflux transporter MFP subunit
2967	 69.60	0	3235698..3236957	+	419	167646940	-	Caul_2978	-	hypothetical protein
2968	 69.90	0	3236954..3237634	+	226	167646941	-	Caul_2979	-	ABC transporter related
2969	 69.65	0	3237783..3238352	+	189	167646942	-	Caul_2980	-	nitroreductase
2970	 66.35	0	3238595..3239866	+	423	167646943	-	Caul_2981	-	putative manganese transport protein
2971	 69.17	0	3239983..3240822	-	279	167646944	-	Caul_2982	-	UspA domain-containing protein
2972	 69.46	0	3241080..3241937	+	285	167646945	-	Caul_2983	-	UspA domain-containing protein
2973	 67.92	0	3241956..3242993	+	345	167646946	-	Caul_2984	-	hypothetical protein
2974	 67.72	0	3243034..3244359	-	441	167646947	-	Caul_2985	-	hypothetical protein
2975	 66.39	0	3244462..3245178	-	238	167646948	-	Caul_2986	-	GntR family transcriptional regulator
2976	 69.25	0	3245363..3247489	+	708	167646949	-	Caul_2987	-	phospholipase C, phosphocholine-specific
2977	 69.24	0	3247522..3248103	+	193	167646950	-	Caul_2988	-	hypothetical protein
2978	 71.96	+1	3248158..3248970	-	270	167646951	-	Caul_2989	-	phosphonoacetaldehyde hydrolase
2979	 70.37	0	3248967..3250100	-	377	167646952	-	Caul_2990	-	FAD dependent oxidoreductase
2980	 67.49	0	3250106..3251080	-	324	167646953	-	Caul_2991	-	aspartyl/asparaginyl beta-hydroxylase
2981	 67.40	0	3251084..3252988	-	634	167646954	-	Caul_2992	-	sulfotransferase
2982	 68.73	0	3252985..3253614	-	209	167646955	-	Caul_2993	-	hypothetical protein
2983	 65.41	0	3253611..3254249	-	212	167646956	-	Caul_2994	-	hypothetical protein
2984	 62.03	-1	3254322..3257123	-	933	167646957	-	Caul_2995	-	TonB-dependent receptor
2985	 70.73	0	3257580..3259328	-	582	167646958	-	Caul_2996	-	acid phosphatase
2986	 68.89	0	3259583..3261697	+	704	167646959	-	Caul_2997	-	phospholipase C, phosphocholine-specific
2987	 67.65	0	3261698..3263122	-	474	167646960	-	Caul_2998	-	XRE family transcriptional regulator
2988	 66.41	0	3263261..3264793	+	510	167646961	-	Caul_2999	-	carboxyl transferase
2989	 67.91	0	3264802..3266811	+	669	167646962	-	Caul_3000	-	carbamoyl-phosphate synthase L chain ATP-binding
2990	 67.25	0	3266808..3267317	+	169	167646963	-	Caul_3001	-	MerR family transcriptional regulator
2991	 71.64	+1	3267664..3269070	+	468	167646964	-	Caul_3002	-	FAD linked oxidase domain-containing protein
2992	 72.84	+1	3269067..3270605	+	512	167646965	-	Caul_3003	-	hypothetical protein
2993	 72.59	+1	3270739..3271278	+	179	167646966	-	Caul_3004	-	putative lipid carrier protein-like protein
2994	 70.49	0	3271278..3272270	+	330	167646967	-	Caul_3005	-	peptidase U32
2995	 71.29	0	3272267..3273175	+	302	167646968	-	Caul_3006	-	peptidase U32
2996	 72.65	+1	3273172..3274374	+	400	167646969	-	Caul_3007	-	FAD dependent oxidoreductase
2997	 66.67	0	3274578..3274883	-	101	167646970	-	Caul_3008	-	ETC complex I subunit region
2998	 68.80	0	3275070..3275585	-	171	167646971	-	Caul_3009	-	hypothetical protein
2999	 66.50	0	3275697..3276302	-	201	167646972	-	Caul_3010	-	cold-shock DNA-binding domain-containing protein
3000	 70.63	0	3276749..3278566	-	605	167646973	-	Caul_3011	-	single-stranded-DNA-specific exonuclease RecJ
3001	 65.75	0	3278995..3280527	+	510	167646974	-	Caul_3012	-	hemolysin-type calcium-binding region
3002	 68.11	0	3280689..3281657	-	322	167646975	-	Caul_3013	-	fructose-1,6-bisphosphatase
3003	 68.87	0	3281705..3282658	-	317	167646976	-	Caul_3014	-	fructose 1,6-bisphosphatase II
3004	 69.84	0	3282712..3284001	-	429	167646977	-	Caul_3015	-	homoserine dehydrogenase
3005	 65.68	0	3284059..3285279	-	406	167646978	-	Caul_3016	-	aminotransferase
3006	 70.32	0	3285389..3285853	-	154	167646979	-	Caul_3017	-	hypothetical protein
3007	 66.42	0	3285949..3287961	+	670	167646980	-	Caul_3018	-	poly(R)-hydroxyalkanoic acid synthase, class I
3008	 70.48	0	3288014..3288223	+	69	167646981	-	Caul_3019	-	hypothetical protein
3009	 69.07	0	3288208..3288747	+	179	167646982	-	Caul_3020	-	HlyD family secretion protein
3010	 62.68	-1	3288795..3289823	+	342	167646983	-	Caul_3021	-	hypothetical protein
3011	 62.12	-1	3289990..3290253	+	87	167646984	-	Caul_3022	-	SpoVT/AbrB domain-containing protein
3012	 61.24	-1	3290250..3290636	+	128	167646985	-	Caul_3023	-	PilT domain-containing protein
3013	 68.67	0	3290650..3291597	-	315	167646986	-	Caul_3024	-	N-acetyl-gamma-glutamyl-phosphate reductase
3014	 66.46	0	3291688..3292161	-	157	167646987	-	Caul_3025	-	30S ribosomal protein S9
3015	 62.66	-1	3292165..3292638	-	157	167646988	-	Caul_3026	-	50S ribosomal protein L13
3016	 69.79	0	3292851..3294356	-	501	167646989	-	Caul_3027	-	alkaline phosphatase
3017	 69.48	0	3294444..3295475	-	343	167646990	-	Caul_3028	-	cytochrome oxidase assembly
3018	 64.02	0	3295631..3295894	+	87	167646991	-	Caul_3029	-	transglycosylase-associated protein
3019	 65.32	0	3295891..3296112	+	73	167646992	-	Caul_3030	-	hypothetical protein
3020	 69.93	0	3296494..3296922	-	142	167646993	-	Caul_3031	-	MerR family transcriptional regulator
3021	 66.01	0	3296937..3297239	-	100	167646994	-	Caul_3032	-	integration host factor, alpha subunit
3022	 69.73	0	3297430..3298407	-	325	167646995	-	Caul_3033	-	3-oxoacyl-(acyl carrier protein) synthase III
3023	 68.54	0	3298404..3299471	-	355	167646996	-	Caul_3034	-	putative glycerol-3-phosphate acyltransferase PlsX
3024	 69.78	0	3299614..3300159	-	181	167646997	-	Caul_3035	-	hypothetical protein
3025	 69.49	0	3300156..3300686	-	176	167646998	-	Caul_3036	-	hypothetical protein
3026	 65.64	0	3300807..3301295	+	162	167646999	-	Caul_3037	-	SmpA/OmlA domain-containing protein
3027	 64.94	0	3301460..3301981	+	173	167647000	-	Caul_3038	-	response regulator receiver protein
3028	 68.63	0	3301991..3303775	-	594	167647001	-	Caul_3039	-	TrkA domain-containing protein
3029	 69.72	0	3303974..3304333	+	119	167647002	-	Caul_3040	-	hypothetical protein
3030	 67.41	0	3304562..3306700	-	712	167647003	-	Caul_3041	-	membrane-bound proton-translocating pyrophosphatase
3031	 68.95	0	3307093..3307617	-	174	167647004	-	Caul_3042	-	hypothetical protein
3032	 73.56	+1	3307670..3308743	-	357	167647005	-	Caul_3043	-	thiamine-monophosphate kinase
3033	 68.18	0	3308727..3309188	-	153	167647006	-	Caul_3044	-	transcription antitermination protein NusB
3034	 66.23	0	3309185..3309646	-	153	167647007	-	Caul_3045	-	67-dimethyl-8-ribityllumazine synthase
3035	 64.98	0	3309765..3310238	-	157	167647008	-	Caul_3046	-	transcriptional regulator NrdR
3036	 68.20	0	3310270..3311574	-	434	167647009	-	Caul_3047	-	glycine hydroxymethyltransferase
3037	 64.58	0	3311775..3312206	+	143	167647010	-	Caul_3048	-	MucR family transcriptional regulator
3038	 66.83	0	3312252..3313478	-	408	167647011	-	Caul_3049	-	5-aminolevulinate synthase
3039	 70.68	0	3313659..3314555	-	298	167647012	-	Caul_3050	-	3-hydroxyisobutyrate dehydrogenase
3040	 69.78	0	3314726..3315529	-	267	167647013	-	Caul_3051	-	hypothetical protein
3041	 67.05	0	3315587..3316639	-	350	167647014	-	Caul_3052	-	enoyl-CoA hydratase/isomerase
3042	 65.26	0	3316636..3317061	-	141	167647015	-	Caul_3053	-	PilT domain-containing protein
3043	 69.93	0	3317058..3317333	-	91	167647016	-	Caul_3054	-	prevent-host-death family protein
3044	 67.11	0	3317375..3318514	-	379	167647017	-	Caul_3055	-	acyl-CoA dehydrogenase domain-containing protein
3045	 65.05	0	3318725..3319156	+	143	167647018	-	Caul_3056	-	hypothetical protein
3046	 69.45	0	3319232..3320236	+	334	167647019	-	Caul_3057	-	delta-aminolevulinic acid dehydratase
3047	 70.62	0	3320233..3320637	+	134	167647020	-	Caul_3058	-	NUDIX hydrolase
3048	 62.64	-1	3320712..3320984	+	90	167647021	-	Caul_3059	-	hypothetical protein
3049	 70.06	0	3321694..3322548	-	284	167647022	-	Caul_3060	-	6-phosphogluconate dehydrogenase NAD-binding
3050	 67.00	0	3322665..3323564	+	299	167647023	-	Caul_3061	-	OmpA/MotB domain-containing protein
3051	 69.60	0	3323689..3324540	+	283	167647024	-	Caul_3062	-	arginyl-tRNA-protein transferase
3052	 67.57	0	3324549..3325319	-	256	167647025	-	Caul_3063	-	short-chain dehydrogenase/reductase SDR
3053	 68.27	0	3325332..3326267	-	311	167647026	-	Caul_3064	-	2-nitropropane dioxygenase NPD
3054	 68.00	0	3326264..3327241	-	325	167647027	-	Caul_3065	-	alcohol dehydrogenase
3055	 66.29	0	3327287..3328603	-	438	167647028	-	Caul_3066	-	beta-lactamase
3056	 64.20	0	3328938..3331649	-	903	167647029	-	Caul_3067	-	TonB-dependent receptor
3057	 63.41	-1	3331850..3332494	+	214	167647030	-	Caul_3068	-	TetR family transcriptional regulator
3058	 65.33	0	3332510..3332734	-	74	167647031	-	Caul_3069	-	hypothetical protein
3059	 67.98	0	3333307..3333762	+	151	167647032	-	Caul_3070	-	hypothetical protein
3060	 64.30	0	3333759..3334181	+	140	167647033	-	Caul_3071	-	hypothetical protein
3061	 62.34	-1	3334247..3334777	+	176	167647034	-	Caul_3072	-	GCN5-related N-acetyltransferase
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.