IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2839	 73.39	+1	3090762..3092219	-	485	167646812	-	Caul_2850	-	carbohydrate kinase, YjeF related protein
2840	 71.05	0	3092232..3092801	-	189	167646813	-	Caul_2851	-	phosphoglycerate mutase
2841	 60.47	-1	3093307..3093645	+	112	167646814	-	Caul_2852	-	nitrogen regulatory protein P-II
2842	 62.55	-1	3093685..3095094	+	469	167646815	-	Caul_2853	-	glutamine synthetase, type I
2843	 69.26	0	3095634..3098291	-	885	167646816	-	Caul_2854	-	erythromycin esterase
2844	 65.45	0	3098288..3098863	-	191	167646817	-	Caul_2855	-	nitroreductase
2845	 67.71	0	3099156..3099923	+	255	167646818	-	Caul_2856	-	short-chain dehydrogenase/reductase SDR
2846	 62.26	-1	3100068..3100544	-	158	167646819	-	Caul_2857	-	heat shock protein Hsp20
2847	 62.67	-1	3101205..3102356	+	383	167646820	-	Caul_2858	-	AraC family transcriptional regulator
2848	 66.89	0	3102719..3105427	+	902	167646821	-	Caul_2859	-	TonB-dependent receptor
2849	 67.60	0	3105588..3107195	+	535	167646822	-	Caul_2860	-	AMP-dependent synthetase and ligase
2850	 67.59	0	3107176..3108042	+	288	167646823	-	Caul_2861	-	3-hydroxybutyryl-CoA dehydrogenase
2851	 65.33	0	3108039..3109385	+	448	167646824	-	Caul_2862	-	major facilitator transporter
2852	 67.21	0	3109385..3111046	+	553	167646825	-	Caul_2863	-	carboxylesterase type B
2853	 62.02	-1	3111311..3111826	-	171	167646826	-	Caul_2864	-	cupin 2 domain-containing protein
2854	 69.36	0	3111926..3112333	-	135	167646827	-	Caul_2865	-	antibiotic biosynthesis monooxygenase
2855	 71.16	0	3112521..3112898	-	125	167646828	-	Caul_2866	-	proteinase inhibitor I1 Kazal
2856	 68.83	0	3113058..3115181	+	707	167646829	-	Caul_2867	-	DNA topoisomerase IV subunit B
2857	 68.11	0	3115943..3116497	-	184	167646830	-	Caul_2868	-	TetR family transcriptional regulator
2858	 66.14	0	3116676..3117428	+	250	167646831	-	Caul_2869	-	short-chain dehydrogenase/reductase SDR
2859	 65.24	0	3117523..3118011	-	162	167646832	-	Caul_2870	-	pantetheine-phosphate adenylyltransferase
2860	 67.53	0	3118052..3120820	-	922	167646833	-	Caul_2871	-	DNA gyrase subunit A
2861	 73.92	+1	3120944..3121453	+	169	167646834	-	Caul_2872	-	superoxide dismutase copper/zinc binding
2862	 71.01	0	3121646..3122542	-	298	167646835	-	Caul_2873	-	hypothetical protein
2863	 71.25	0	3122555..3123841	-	428	167646836	-	Caul_2874	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2864	 72.22	+1	3123916..3125067	+	383	167646837	-	Caul_2875	-	8-amino-7-oxononanoate synthase
2865	 72.29	+1	3125067..3125759	+	230	167646838	-	Caul_2876	-	dethiobiotin synthase
2866	 72.82	+1	3125756..3126649	+	297	167646839	-	Caul_2877	-	oxidoreductase domain-containing protein
2867	 68.86	0	3126692..3127786	-	364	167646840	-	Caul_2878	-	fatty acid desaturase
2868	 68.27	0	3128130..3128627	-	165	167646841	-	Caul_2879	-	single-strand binding protein
2869	 65.89	0	3128767..3129153	-	128	167646842	-	Caul_2880	-	hypothetical protein
2870	 72.02	+1	3129175..3129846	-	223	167646843	-	Caul_2881	-	hypothetical protein
2871	 67.30	0	3129939..3132791	-	950	167646844	-	Caul_2882	-	regulatory protein FlaEY
2872	 69.73	0	3132872..3133426	-	184	167646845	-	Caul_2883	-	GCN5-related N-acetyltransferase
2873	 64.76	0	3133486..3134325	-	279	167646846	-	Caul_2884	-	flagellin domain-containing protein
2874	 66.96	0	3134499..3134834	-	111	167646847	-	Caul_2885	-	hypothetical protein
2875	 62.17	-1	3134942..3135763	-	273	167646848	-	Caul_2886	-	flagellin domain-containing protein
2876	 60.56	-1	3136085..3136903	-	272	167646849	-	Caul_2887	-	flagellin domain-containing protein
2877	 66.12	0	3137150..3137512	-	120	167646850	-	Caul_2888	-	flagellar biosynthesis regulatory protein FlaF
2878	 59.85	-2	3137502..3137897	-	131	167646851	-	Caul_2889	-	flagellar biosynthesis repressor FlbT
2879	 68.17	0	3138082..3139881	+	599	167646852	-	Caul_2890	-	TPR repeat-containing protein
2880	 68.75	0	3139968..3140687	+	239	167646853	-	Caul_2891	-	acylneuraminate cytidylyltransferase
2881	 67.17	0	3140684..3141277	+	197	167646854	-	Caul_2892	-	GCN5-related N-acetyltransferase
2882	 64.55	0	3141490..3141867	+	125	167646855	-	Caul_2893	-	hypothetical protein
2883	 64.94	0	3142144..3143013	+	289	167646856	-	Caul_2894	-	ATPase
2884	 70.86	0	3143093..3143950	+	285	167646857	-	Caul_2895	-	hypothetical protein
2885	 69.09	0	3144096..3144467	-	123	167646858	-	Caul_2896	-	hypothetical protein
2886	 70.97	0	3144495..3145307	-	270	167646859	-	Caul_2897	-	UspA domain-containing protein
2887	 67.67	0	3145519..3146115	+	198	167646860	-	Caul_2898	-	metal dependent phosphohydrolase
2888	 75.10	+1	3146112..3147119	+	335	167646861	-	Caul_2899	-	hypothetical protein
2889	 56.78	-2	3147327..3147761	-	144	167646862	-	Caul_2900	-	hypothetical protein
2890	 65.95	0	3147803..3148783	-	326	167646863	-	Caul_2901	-	fatty acid hydroxylase
2891	 74.63	+1	3148780..3149181	-	133	167646864	-	Caul_2902	-	hypothetical protein
2892	 67.05	0	3149322..3149846	-	174	167646865	-	Caul_2903	-	hypothetical protein
2893	 65.41	0	3150163..3151278	+	371	167646866	-	Caul_2904	-	3-oxoacyl-(acyl carrier protein) synthase III
2894	 64.23	0	3151286..3151696	-	136	167646867	-	Caul_2905	-	hypothetical protein
2895	 67.49	0	3151693..3151935	-	80	167646868	-	Caul_2906	-	hypothetical protein
2896	 68.53	0	3151982..3153163	-	393	167646869	-	Caul_2907	-	peptidase M48 Ste24p
2897	 67.42	0	3153337..3154134	+	265	167646870	-	Caul_2908	-	cystine transporter subunit
2898	 68.95	0	3154287..3154943	+	218	167646871	-	Caul_2909	-	polar amino acid ABC transporter, inner membrane subunit
2899	 66.94	0	3154940..3155680	+	246	167646872	-	Caul_2910	-	ABC transporter related
2900	 63.37	-1	3155744..3156046	+	100	167646873	-	Caul_2911	-	hypothetical protein
2901	 71.58	0	3156199..3158274	+	691	167646874	-	Caul_2912	-	DEAD/DEAH box helicase domain-containing protein
2902	 73.52	+1	3158308..3159285	+	325	167646875	-	Caul_2913	-	aminoglycoside phosphotransferase
2903	 73.77	+1	3159282..3159647	+	121	167646876	-	Caul_2914	-	hypothetical protein
2904	 71.43	0	3159813..3160946	-	377	167646877	-	Caul_2915	-	hypothetical protein
2905	 68.83	0	3160998..3162200	-	400	167646878	-	Caul_2916	-	acetyl-CoA acetyltransferase
2906	 68.75	0	3162211..3163698	-	495	167646879	-	Caul_2917	-	hypothetical protein
2907	 64.77	0	3163903..3164904	-	333	167646880	-	Caul_2918	-	ADP-L-glycero-D-manno-heptose-6-epimerase
2908	 69.94	0	3164981..3166417	+	478	167646881	-	Caul_2919	-	deoxyribodipyrimidine photo-lyase
2909	 67.07	0	3166505..3167740	+	411	167646882	-	Caul_2920	-	cyclopropane-fatty-acyl-phospholipid synthase
2910	 66.31	0	3167826..3168107	+	93	167646883	-	Caul_2921	-	hypothetical protein
2911	 67.16	0	3168224..3169234	+	336	167646884	-	Caul_2922	-	cysteine synthase A
2912	 64.92	0	3169344..3169916	+	190	167646885	-	Caul_2923	-	N-acetylmuramoyl-L-alanine amidase
2913	 70.18	0	3169968..3170906	-	312	167646886	-	Caul_2924	-	transposase IS116/IS110/IS902 family protein
2914	 70.89	0	3171287..3172138	+	283	167646887	-	Caul_2925	-	rhodanese domain-containing protein
2915	 69.07	0	3172386..3173552	+	388	167646888	-	Caul_2926	-	cystathionine beta-lyase
2916	 69.43	0	3173760..3174302	+	180	167646889	-	Caul_2927	-	hypothetical protein
2917	 68.29	0	3174396..3174764	+	122	167646890	-	Caul_2928	-	CopY family transcriptional regulator
2918	 73.43	+1	3174754..3176526	+	590	167646891	-	Caul_2929	-	peptidase M56 BlaR1
2919	 70.20	0	3176569..3178125	+	518	167646892	-	Caul_2930	-	glucose-methanol-choline oxidoreductase
2920	 75.50	+2	3178122..3178472	+	116	167646893	-	Caul_2931	-	hypothetical protein
2921	 69.36	0	3178575..3179909	-	444	167646894	-	Caul_2932	-	hypothetical protein
2922	 69.23	0	3180094..3181656	+	520	167646895	-	Caul_2933	-	hypothetical protein
2923	 68.49	0	3181653..3182696	+	347	167646896	-	Caul_2934	-	hypothetical protein
2924	 71.69	+1	3182724..3183320	+	198	167646897	-	Caul_2935	-	hypothetical protein
2925	 70.18	0	3183423..3184361	-	312	167646898	-	Caul_2936	-	transposase IS116/IS110/IS902 family protein
2926	 67.37	0	3184661..3186796	-	711	167646899	-	Caul_2937	-	glucose-methanol-choline oxidoreductase
2927	 72.07	+1	3186928..3187815	+	295	167646900	-	Caul_2938	-	stearoyl-CoA 9-desaturase
2928	 71.87	+1	3187801..3189414	-	537	167646901	-	Caul_2939	-	hypothetical protein
2929	 66.03	0	3189411..3189722	-	103	167646902	-	Caul_2940	-	phosphopantetheine-binding
2930	 66.96	0	3189898..3190926	+	342	167646903	-	Caul_2941	-	fatty acid desaturase
2931	 68.39	0	3190923..3191444	+	173	167646904	-	Caul_2942	-	hypothetical protein
2932	 69.74	0	3191441..3192643	+	400	167646905	-	Caul_2943	-	aminotransferase class I and II
2933	 72.72	+1	3192640..3193515	+	291	167646906	-	Caul_2944	-	short-chain dehydrogenase/reductase SDR
2934	 65.59	0	3193512..3193790	+	92	167646907	-	Caul_2945	-	phosphopantetheine-binding
2935	 72.51	+1	3193774..3196647	+	957	167646908	-	Caul_2946	-	aminotransferase class-III
2936	 71.58	0	3196644..3198839	+	731	167646909	-	Caul_2947	-	molydopterin dinucleotide-binding region
2937	 67.47	0	3198848..3200098	+	416	167646910	-	Caul_2948	-	acyl-CoA dehydrogenase domain-containing protein
2938	 64.55	0	3200144..3200521	+	125	167646911	-	Caul_2949	-	hypothetical protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.