IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2803	 62.59	-1	3055932..3056348	-	138	167646776	-	Caul_2814	-	methylmalonyl-CoA epimerase
2804	 68.04	0	3056419..3057144	-	241	167646777	-	Caul_2815	-	rhomboid family protein
2805	 67.85	0	3057152..3058846	-	564	167646778	-	Caul_2816	-	beta-lactamase domain-containing protein
2806	 64.63	0	3058843..3059628	-	261	167646779	-	Caul_2817	-	pantothenate kinase
2807	 72.11	+1	3059628..3060380	-	250	167646780	-	Caul_2818	-	biotin--acetyl-CoA-carboxylase ligase
2808	 69.15	0	3060382..3061833	-	483	167646781	-	Caul_2819	-	NADH dehydrogenase subunit N
2809	 64.31	0	3061842..3063326	-	494	167646782	-	Caul_2820	-	NADH dehydrogenase subunit M
2810	 65.04	0	3063340..3065424	-	694	167646783	-	Caul_2821	-	NADH dehydrogenase subunit L
2811	 61.11	-1	3065430..3065735	-	101	167646784	-	Caul_2822	-	NADH dehydrogenase subunit K
2812	 64.22	0	3065732..3066343	-	203	167646785	-	Caul_2823	-	NADH dehydrogenase subunit J
2813	 64.24	0	3066423..3066917	-	164	167646786	-	Caul_2824	-	NADH dehydrogenase subunit I
2814	 65.08	0	3066914..3067165	-	83	167646787	-	Caul_2825	-	hypothetical protein
2815	 61.82	-1	3067162..3068235	-	357	167646788	-	Caul_2826	-	NADH dehydrogenase subunit H
2816	 67.78	0	3068241..3070301	-	686	167646789	-	Caul_2827	-	NADH dehydrogenase subunit G
2817	 65.53	0	3070308..3071627	-	439	167646790	-	Caul_2828	-	NADH dehydrogenase I subunit F
2818	 64.79	0	3071631..3071897	-	88	167646791	-	Caul_2829	-	hypothetical protein
2819	 66.67	0	3071894..3072010	-	38	167646792	-	Caul_2830	-	hypothetical protein
2820	 63.76	-1	3072010..3072696	-	228	167646793	-	Caul_2831	-	NADH dehydrogenase subunit E
2821	 65.17	0	3072693..3073025	-	110	167646794	-	Caul_2832	-	hypothetical protein
2822	 64.35	0	3073022..3074272	-	416	167646795	-	Caul_2833	-	NADH dehydrogenase subunit D
2823	 65.58	0	3074276..3074920	-	214	167646796	-	Caul_2834	-	NADH dehydrogenase subunit C
2824	 66.50	0	3074917..3075507	-	196	167646797	-	Caul_2835	-	NADH dehydrogenase subunit B
2825	 60.32	-1	3075504..3075881	-	125	167646798	-	Caul_2836	-	NADH dehydrogenase subunit A
2826	 62.75	-1	3076524..3076829	-	101	167646799	-	Caul_2837	-	hypothetical protein
2827	 70.40	0	3076955..3077971	+	338	167646800	-	Caul_2838	-	luciferase family protein
2828	 69.91	0	3078070..3079302	-	410	167646801	-	Caul_2839	-	glycosyl transferase group 1
2829	 71.23	0	3079364..3079582	-	72	167646802	-	Caul_2840	-	hypothetical protein
2830	 66.55	0	3079586..3080467	-	293	167646803	-	Caul_2841	-	band 7 protein
2831	 69.11	0	3080572..3081840	+	422	167646804	-	Caul_2842	-	glycosyl transferase family protein
2832	 57.39	-2	3081926..3082324	-	132	167646805	-	Caul_2843	-	hypothetical protein
2833	 63.80	-1	3082436..3082714	-	92	167646806	-	Caul_2844	-	histone family protein DNA-binding protein
2834	 63.79	-1	3082861..3085260	-	799	167646807	-	Caul_2845	-	ATP-dependent protease La
2835	 63.34	-1	3085645..3086907	-	420	167646808	-	Caul_2846	-	ATP-dependent protease ATP-binding subunit
2836	 68.27	0	3087273..3087959	+	228	167646809	-	Caul_2847	-	HAD family hydrolase
2837	 62.20	-1	3088041..3088667	-	208	167646810	-	Caul_2848	-	endopeptidase Clp
2838	 65.64	0	3088846..3090210	-	454	167646811	-	Caul_2849	-	trigger factor
2839	 73.39	+1	3090762..3092219	-	485	167646812	-	Caul_2850	-	carbohydrate kinase, YjeF related protein
2840	 71.05	0	3092232..3092801	-	189	167646813	-	Caul_2851	-	phosphoglycerate mutase
2841	 60.47	-1	3093307..3093645	+	112	167646814	-	Caul_2852	-	nitrogen regulatory protein P-II
2842	 62.55	-1	3093685..3095094	+	469	167646815	-	Caul_2853	-	glutamine synthetase, type I
2843	 69.26	0	3095634..3098291	-	885	167646816	-	Caul_2854	-	erythromycin esterase
2844	 65.45	0	3098288..3098863	-	191	167646817	-	Caul_2855	-	nitroreductase
2845	 67.71	0	3099156..3099923	+	255	167646818	-	Caul_2856	-	short-chain dehydrogenase/reductase SDR
2846	 62.26	-1	3100068..3100544	-	158	167646819	-	Caul_2857	-	heat shock protein Hsp20
2847	 62.67	-1	3101205..3102356	+	383	167646820	-	Caul_2858	-	AraC family transcriptional regulator
2848	 66.89	0	3102719..3105427	+	902	167646821	-	Caul_2859	-	TonB-dependent receptor
2849	 67.60	0	3105588..3107195	+	535	167646822	-	Caul_2860	-	AMP-dependent synthetase and ligase
2850	 67.59	0	3107176..3108042	+	288	167646823	-	Caul_2861	-	3-hydroxybutyryl-CoA dehydrogenase
2851	 65.33	0	3108039..3109385	+	448	167646824	-	Caul_2862	-	major facilitator transporter
2852	 67.21	0	3109385..3111046	+	553	167646825	-	Caul_2863	-	carboxylesterase type B
2853	 62.02	-1	3111311..3111826	-	171	167646826	-	Caul_2864	-	cupin 2 domain-containing protein
2854	 69.36	0	3111926..3112333	-	135	167646827	-	Caul_2865	-	antibiotic biosynthesis monooxygenase
2855	 71.16	0	3112521..3112898	-	125	167646828	-	Caul_2866	-	proteinase inhibitor I1 Kazal
2856	 68.83	0	3113058..3115181	+	707	167646829	-	Caul_2867	-	DNA topoisomerase IV subunit B
2857	 68.11	0	3115943..3116497	-	184	167646830	-	Caul_2868	-	TetR family transcriptional regulator
2858	 66.14	0	3116676..3117428	+	250	167646831	-	Caul_2869	-	short-chain dehydrogenase/reductase SDR
2859	 65.24	0	3117523..3118011	-	162	167646832	-	Caul_2870	-	pantetheine-phosphate adenylyltransferase
2860	 67.53	0	3118052..3120820	-	922	167646833	-	Caul_2871	-	DNA gyrase subunit A
2861	 73.92	+1	3120944..3121453	+	169	167646834	-	Caul_2872	-	superoxide dismutase copper/zinc binding
2862	 71.01	0	3121646..3122542	-	298	167646835	-	Caul_2873	-	hypothetical protein
2863	 71.25	0	3122555..3123841	-	428	167646836	-	Caul_2874	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2864	 72.22	+1	3123916..3125067	+	383	167646837	-	Caul_2875	-	8-amino-7-oxononanoate synthase
2865	 72.29	+1	3125067..3125759	+	230	167646838	-	Caul_2876	-	dethiobiotin synthase
2866	 72.82	+1	3125756..3126649	+	297	167646839	-	Caul_2877	-	oxidoreductase domain-containing protein
2867	 68.86	0	3126692..3127786	-	364	167646840	-	Caul_2878	-	fatty acid desaturase
2868	 68.27	0	3128130..3128627	-	165	167646841	-	Caul_2879	-	single-strand binding protein
2869	 65.89	0	3128767..3129153	-	128	167646842	-	Caul_2880	-	hypothetical protein
2870	 72.02	+1	3129175..3129846	-	223	167646843	-	Caul_2881	-	hypothetical protein
2871	 67.30	0	3129939..3132791	-	950	167646844	-	Caul_2882	-	regulatory protein FlaEY
2872	 69.73	0	3132872..3133426	-	184	167646845	-	Caul_2883	-	GCN5-related N-acetyltransferase
2873	 64.76	0	3133486..3134325	-	279	167646846	-	Caul_2884	-	flagellin domain-containing protein
2874	 66.96	0	3134499..3134834	-	111	167646847	-	Caul_2885	-	hypothetical protein
2875	 62.17	-1	3134942..3135763	-	273	167646848	-	Caul_2886	-	flagellin domain-containing protein
2876	 60.56	-1	3136085..3136903	-	272	167646849	-	Caul_2887	-	flagellin domain-containing protein
2877	 66.12	0	3137150..3137512	-	120	167646850	-	Caul_2888	-	flagellar biosynthesis regulatory protein FlaF
2878	 59.85	-2	3137502..3137897	-	131	167646851	-	Caul_2889	-	flagellar biosynthesis repressor FlbT
2879	 68.17	0	3138082..3139881	+	599	167646852	-	Caul_2890	-	TPR repeat-containing protein
2880	 68.75	0	3139968..3140687	+	239	167646853	-	Caul_2891	-	acylneuraminate cytidylyltransferase
2881	 67.17	0	3140684..3141277	+	197	167646854	-	Caul_2892	-	GCN5-related N-acetyltransferase
2882	 64.55	0	3141490..3141867	+	125	167646855	-	Caul_2893	-	hypothetical protein
2883	 64.94	0	3142144..3143013	+	289	167646856	-	Caul_2894	-	ATPase
2884	 70.86	0	3143093..3143950	+	285	167646857	-	Caul_2895	-	hypothetical protein
2885	 69.09	0	3144096..3144467	-	123	167646858	-	Caul_2896	-	hypothetical protein
2886	 70.97	0	3144495..3145307	-	270	167646859	-	Caul_2897	-	UspA domain-containing protein
2887	 67.67	0	3145519..3146115	+	198	167646860	-	Caul_2898	-	metal dependent phosphohydrolase
2888	 75.10	+1	3146112..3147119	+	335	167646861	-	Caul_2899	-	hypothetical protein
2889	 56.78	-2	3147327..3147761	-	144	167646862	-	Caul_2900	-	hypothetical protein
2890	 65.95	0	3147803..3148783	-	326	167646863	-	Caul_2901	-	fatty acid hydroxylase
2891	 74.63	+1	3148780..3149181	-	133	167646864	-	Caul_2902	-	hypothetical protein
2892	 67.05	0	3149322..3149846	-	174	167646865	-	Caul_2903	-	hypothetical protein
2893	 65.41	0	3150163..3151278	+	371	167646866	-	Caul_2904	-	3-oxoacyl-(acyl carrier protein) synthase III
2894	 64.23	0	3151286..3151696	-	136	167646867	-	Caul_2905	-	hypothetical protein
2895	 67.49	0	3151693..3151935	-	80	167646868	-	Caul_2906	-	hypothetical protein
2896	 68.53	0	3151982..3153163	-	393	167646869	-	Caul_2907	-	peptidase M48 Ste24p
2897	 67.42	0	3153337..3154134	+	265	167646870	-	Caul_2908	-	cystine transporter subunit
2898	 68.95	0	3154287..3154943	+	218	167646871	-	Caul_2909	-	polar amino acid ABC transporter, inner membrane subunit
2899	 66.94	0	3154940..3155680	+	246	167646872	-	Caul_2910	-	ABC transporter related
2900	 63.37	-1	3155744..3156046	+	100	167646873	-	Caul_2911	-	hypothetical protein
2901	 71.58	0	3156199..3158274	+	691	167646874	-	Caul_2912	-	DEAD/DEAH box helicase domain-containing protein
2902	 73.52	+1	3158308..3159285	+	325	167646875	-	Caul_2913	-	aminoglycoside phosphotransferase
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.