IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2723	 72.87	+1	2969741..2970256	-	171	167646696	-	Caul_2734	-	adenosylcobinamide kinase
2724	 68.69	0	2970604..2972529	+	641	167646697	-	Caul_2735	-	TonB-dependent receptor
2725	 73.25	+1	2972532..2973518	+	328	167646698	-	Caul_2736	-	L-threonine-O-3-phosphate decarboxylase
2726	 64.69	0	2973515..2974120	+	201	167646699	-	Caul_2737	-	cob(I)alamin adenosyltransferase
2727	 71.20	0	2974156..2974971	+	271	167646700	-	Caul_2738	-	periplasmic binding protein
2728	 72.05	+1	2974968..2975951	+	327	167646701	-	Caul_2739	-	transport system permease protein
2729	 74.47	+1	2975948..2976742	+	264	167646702	-	Caul_2740	-	ABC transporter related
2730	 74.32	+1	2976777..2977691	+	304	167646703	-	Caul_2741	-	cobalamin biosynthesis protein CobD
2731	 73.54	+1	2977720..2978766	+	348	167646704	-	Caul_2742	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2732	 73.25	+1	2978766..2979524	+	252	167646705	-	Caul_2743	-	cobalamin 5'-phosphate synthase
2733	 70.96	0	2979521..2980033	+	170	167646706	-	Caul_2744	-	hypothetical protein
2734	 70.88	0	2980111..2981463	+	450	167646707	-	Caul_2745	-	hypothetical protein
2735	 70.15	0	2981572..2983608	+	678	167646708	-	Caul_2746	-	DEAD/DEAH box helicase domain-containing protein
2736	 65.82	0	2984288..2985820	-	510	167646709	-	Caul_2747	-	aldehyde dehydrogenase
2737	 66.76	0	2985921..2986979	+	352	167646710	-	Caul_2748	-	diguanylate cyclase
2738	 69.28	0	2987093..2987896	+	267	167646711	-	Caul_2749	-	enoyl-CoA hydratase
2739	 65.56	0	2987976..2988428	-	150	167646712	-	Caul_2750	-	cyclase/dehydrase
2740	 66.95	0	2988435..2989490	-	351	167646713	-	Caul_2751	-	lipoyl synthase
2741	 71.63	0	2989522..2990589	+	355	167646714	-	Caul_2752	-	lysophospholipase L2, putative
2742	 66.02	0	2990732..2992285	+	517	167646715	-	Caul_2753	-	AMP-dependent synthetase and ligase
2743	 66.92	0	2992415..2992810	+	131	167646716	-	Caul_2754	-	DoxX family protein
2744	 68.24	0	2992886..2994286	-	466	167646717	-	Caul_2755	-	dihydrolipoamide dehydrogenase
2745	 63.10	-1	2994367..2994843	-	158	167646718	-	Caul_2756	-	glutathione peroxidase
2746	 69.79	0	2994963..2996273	-	436	167646719	-	Caul_2757	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
2747	 68.72	0	2996286..2996723	-	145	167646720	-	Caul_2758	-	glutathione-dependent formaldehyde-activating GFA
2748	 67.47	0	2996779..2998143	-	454	167646721	-	Caul_2759	-	pyruvate dehydrogenase subunit beta
2749	 65.79	0	2998140..2999171	-	343	167646722	-	Caul_2760	-	pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
2750	 63.30	-1	2999337..2999633	-	98	167646723	-	Caul_2761	-	septum formation initiator
2751	 64.72	0	2999986..3001266	-	426	167646724	-	Caul_2762	-	phosphopyruvate hydratase
2752	 69.68	0	3001380..3002408	-	342	167646725	-	Caul_2763	-	peptidase A2A
2753	 63.12	-1	3002605..3002745	-	46	167646726	-	Caul_2764	-	ribosomal protein L32
2754	 65.09	0	3002904..3004556	-	550	167646727	-	Caul_2765	-	CTP synthetase
2755	 69.80	0	3004634..3005143	-	169	167646728	-	Caul_2766	-	preprotein translocase, SecG subunit
2756	 68.59	0	3005297..3005815	+	172	167646729	-	Caul_2767	-	GCN5-related N-acetyltransferase
2757	 65.07	0	3006612..3007613	+	333	167646730	-	Caul_2768	-	signal transduction histidine kinase
2758	 71.74	+1	3007714..3008502	-	262	167646731	-	Caul_2769	-	Triose-phosphate isomerase
2759	 70.07	0	3008635..3010602	+	655	167646732	-	Caul_2770	-	rotamase family protein
2760	 70.12	0	3010599..3012134	+	511	167646733	-	Caul_2771	-	anthranilate synthase component I
2761	 70.32	0	3012189..3012407	-	72	167646734	-	Caul_2772	-	hypothetical protein
2762	 63.49	-1	3012434..3012874	-	146	167646735	-	Caul_2773	-	hypothetical protein
2763	 67.78	0	3012871..3013500	-	209	167646736	-	Caul_2774	-	hypothetical protein
2764	 64.87	0	3013481..3014149	-	222	167646737	-	Caul_2775	-	hypothetical protein
2765	 66.67	0	3014280..3014876	+	198	167646738	-	Caul_2776	-	anthranilate synthase component II
2766	 71.65	+1	3014879..3015922	+	347	167646739	-	Caul_2777	-	anthranilate phosphoribosyltransferase
2767	 70.47	0	3015919..3016707	+	262	167646740	-	Caul_2778	-	indole-3-glycerol-phosphate synthase
2768	 69.58	0	3016673..3018010	+	445	167646741	-	Caul_2779	-	beta-lactamase
2769	 67.67	0	3018017..3018616	-	199	167646742	-	Caul_2780	-	isoprenylcysteine carboxyl methyltransferase
2770	 65.67	0	3018785..3019486	-	233	167646743	-	Caul_2781	-	hypothetical protein
2771	 67.94	0	3019759..3020466	+	235	167646744	-	Caul_2782	-	LexA repressor
2772	 69.65	0	3020586..3020987	-	133	167646745	-	Caul_2783	-	glutathione-dependent formaldehyde-activating GFA
2773	 68.33	0	3021019..3021681	-	220	167646746	-	Caul_2784	-	glutathione S-transferase domain-containing protein
2774	 74.05	+1	3021684..3023864	-	726	167646747	-	Caul_2785	-	ComEC/Rec2-related protein
2775	 68.28	0	3023899..3025323	+	474	167646748	-	Caul_2786	-	glutamyl-tRNA synthetase
2776	 63.08	-1	3025391..3026671	+	426	167646749	-	Caul_2787	-	citrate synthase I
2777	 71.43	0	3026728..3027000	-	90	167646750	-	Caul_2788	-	flhB-related protein
2778	 75.03	+1	3026997..3028622	-	541	167646751	-	Caul_2789	-	hypothetical protein
2779	 69.81	0	3028749..3030527	+	592	167646752	-	Caul_2790	-	integral membrane sensor hybrid histidine kinase
2780	 70.83	0	3030531..3031730	-	399	167646753	-	Caul_2791	-	lipid-A-disaccharide synthase
2781	 72.65	+1	3031727..3032578	-	283	167646754	-	Caul_2792	-	hypothetical protein
2782	 66.67	0	3032578..3033372	-	264	167646755	-	Caul_2793	-	UDP-N-acetylglucosamine acyltransferase
2783	 62.40	-1	3033369..3033860	-	163	167646756	-	Caul_2794	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
2784	 71.07	0	3033857..3034879	-	340	167646757	-	Caul_2795	-	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
2785	 68.57	0	3034931..3035560	-	209	167646758	-	Caul_2796	-	outer membrane chaperone Skp (OmpH)
2786	 63.66	-1	3035566..3037923	-	785	167646759	-	Caul_2797	-	outer membrane protein assembly complex, YaeT protein
2787	 67.07	0	3037941..3039425	-	494	167646760	-	Caul_2798	-	membrane-associated zinc metalloprotease
2788	 69.57	0	3039445..3040650	-	401	167646761	-	Caul_2799	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2789	 68.51	0	3040647..3041513	-	288	167646762	-	Caul_2800	-	phosphatidate cytidylyltransferase
2790	 67.31	0	3041491..3042270	-	259	167646763	-	Caul_2801	-	undecaprenyl diphosphate synthase
2791	 62.26	-1	3042317..3042883	-	188	167646764	-	Caul_2802	-	ribosome recycling factor
2792	 65.45	0	3042909..3043646	-	245	167646765	-	Caul_2803	-	uridylate kinase
2793	 67.52	0	3043847..3044785	-	312	167646766	-	Caul_2804	-	elongation factor Ts
2794	 67.09	0	3044945..3045886	-	313	167646767	-	Caul_2805	-	30S ribosomal protein S2
2795	 71.58	0	3046224..3046874	+	216	167646768	-	Caul_2806	-	hypothetical protein
2796	 67.81	0	3046882..3047232	-	116	167646769	-	Caul_2807	-	glutathione-dependent formaldehyde-activating GFA
2797	 67.25	0	3047358..3050789	-	1143	167646770	-	Caul_2808	-	DNA polymerase III subunit alpha
2798	 68.44	0	3051066..3052025	+	319	167646771	-	Caul_2809	-	inosine/uridine-preferring nucleoside hydrolase
2799	 69.84	0	3052044..3052736	-	230	167646772	-	Caul_2810	-	ABC transporter related
2800	 66.12	0	3052729..3054003	-	424	167646773	-	Caul_2811	-	LolC/E family lipoprotein releasing system, transmembrane protein
2801	 67.49	0	3054003..3055340	-	445	167646774	-	Caul_2812	-	prolyl-tRNA synthetase
2802	 64.37	0	3055672..3055932	-	86	167646775	-	Caul_2813	-	hypothetical protein
2803	 62.59	-1	3055932..3056348	-	138	167646776	-	Caul_2814	-	methylmalonyl-CoA epimerase
2804	 68.04	0	3056419..3057144	-	241	167646777	-	Caul_2815	-	rhomboid family protein
2805	 67.85	0	3057152..3058846	-	564	167646778	-	Caul_2816	-	beta-lactamase domain-containing protein
2806	 64.63	0	3058843..3059628	-	261	167646779	-	Caul_2817	-	pantothenate kinase
2807	 72.11	+1	3059628..3060380	-	250	167646780	-	Caul_2818	-	biotin--acetyl-CoA-carboxylase ligase
2808	 69.15	0	3060382..3061833	-	483	167646781	-	Caul_2819	-	NADH dehydrogenase subunit N
2809	 64.31	0	3061842..3063326	-	494	167646782	-	Caul_2820	-	NADH dehydrogenase subunit M
2810	 65.04	0	3063340..3065424	-	694	167646783	-	Caul_2821	-	NADH dehydrogenase subunit L
2811	 61.11	-1	3065430..3065735	-	101	167646784	-	Caul_2822	-	NADH dehydrogenase subunit K
2812	 64.22	0	3065732..3066343	-	203	167646785	-	Caul_2823	-	NADH dehydrogenase subunit J
2813	 64.24	0	3066423..3066917	-	164	167646786	-	Caul_2824	-	NADH dehydrogenase subunit I
2814	 65.08	0	3066914..3067165	-	83	167646787	-	Caul_2825	-	hypothetical protein
2815	 61.82	-1	3067162..3068235	-	357	167646788	-	Caul_2826	-	NADH dehydrogenase subunit H
2816	 67.78	0	3068241..3070301	-	686	167646789	-	Caul_2827	-	NADH dehydrogenase subunit G
2817	 65.53	0	3070308..3071627	-	439	167646790	-	Caul_2828	-	NADH dehydrogenase I subunit F
2818	 64.79	0	3071631..3071897	-	88	167646791	-	Caul_2829	-	hypothetical protein
2819	 66.67	0	3071894..3072010	-	38	167646792	-	Caul_2830	-	hypothetical protein
2820	 63.76	-1	3072010..3072696	-	228	167646793	-	Caul_2831	-	NADH dehydrogenase subunit E
2821	 65.17	0	3072693..3073025	-	110	167646794	-	Caul_2832	-	hypothetical protein
2822	 64.35	0	3073022..3074272	-	416	167646795	-	Caul_2833	-	NADH dehydrogenase subunit D
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.