IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2593	 71.43	0	2824704..2825711	+	335	167646566	-	Caul_2604	-	NifR3 family TIM-barrel protein
2594	 70.65	0	2825708..2826838	+	376	167646567	-	Caul_2605	-	signal transduction histidine kinase, nitrogen specific, NtrB
2595	 70.11	0	2826835..2828256	+	473	167646568	-	Caul_2606	-	nitrogen metabolism transcriptional regulator, NtrC, Fis family
2596	 69.96	0	2828399..2830642	+	747	167646569	-	Caul_2607	-	multi-sensor signal transduction histidine kinase
2597	 68.97	0	2830639..2832027	+	462	167646570	-	Caul_2608	-	two component, sigma54 specific, Fis family transcriptional regulator
2598	 69.21	0	2832194..2833057	+	287	167646571	-	Caul_2609	-	D-amino acid aminotransferase
2599	 57.03	-2	2833194..2833442	+	82	167646572	-	Caul_2610	-	RNA-binding protein Hfq
2600	 67.79	0	2833491..2834831	+	446	167646573	-	Caul_2611	-	GTP-binding proten HflX
2601	 68.67	0	2834898..2835446	+	182	167646574	-	Caul_2612	-	glycoside hydrolase family protein
2602	 67.33	0	2835465..2836220	-	251	167646575	-	Caul_2613	-	nucleoside triphosphate pyrophosphohydrolase
2603	 68.68	0	2836267..2837658	-	463	167646576	-	Caul_2614	-	major facilitator transporter
2604	 70.16	0	2837765..2838250	-	161	167646577	-	Caul_2615	-	hypothetical protein
2605	 68.37	0	2838317..2839492	-	391	167646578	-	Caul_2616	-	Na+/H+ antiporter NhaA
2606	 72.35	+1	2839706..2841166	-	486	167646579	-	Caul_2617	-	cobyric acid synthase
2607	 63.61	-1	2841249..2841542	+	97	167646580	-	Caul_2618	-	hypothetical protein
2608	 68.31	0	2841693..2845160	+	1155	167646581	-	Caul_2619	-	transcription-repair coupling factor
2609	 69.21	0	2845359..2845751	+	130	167646582	-	Caul_2620	-	hypothetical protein
2610	 67.59	0	2845859..2846182	+	107	167646583	-	Caul_2621	-	ArsR family transcriptional regulator
2611	 65.17	0	2846179..2846646	+	155	167646584	-	Caul_2622	-	activator of Hsp90 ATPase 1 family protein
2612	 64.89	0	2846643..2846867	+	74	167646585	-	Caul_2623	-	hypothetical protein
2613	 65.28	0	2846873..2847304	+	143	167646586	-	Caul_2624	-	hypothetical protein
2614	 67.27	0	2847319..2847648	-	109	167646587	-	Caul_2625	-	hypothetical protein
2615	 63.64	-1	2847813..2848241	+	142	167646588	-	Caul_2626	-	hypothetical protein
2616	 69.17	0	2848317..2849474	+	385	167646589	-	Caul_2627	-	sulphate transporter
2617	 70.09	0	2849649..2849882	+	77	167646590	-	Caul_2628	-	XRE family transcriptional regulator
2618	 65.33	0	2849908..2850579	-	223	167646591	-	Caul_2629	-	hypothetical protein
2619	 70.06	0	2850785..2851726	-	313	167646592	-	Caul_2630	-	copper resistance B precursor
2620	 67.09	0	2851723..2853393	-	556	167646593	-	Caul_2631	-	CopA family copper resistance protein
2621	 63.19	-1	2853390..2853677	-	95	167646594	-	Caul_2632	-	hypothetical protein
2622	 68.78	0	2853741..2856104	+	787	167646595	-	Caul_2633	-	copper-translocating P-type ATPase
2623	 68.91	0	2856181..2856894	-	237	167646596	-	Caul_2634	-	N-formylglutamate amidohydrolase
2624	 65.60	0	2856968..2857903	+	311	167646597	-	Caul_2635	-	transglutaminase domain-containing protein
2625	 65.30	0	2858025..2858903	+	292	167646598	-	Caul_2636	-	transglutaminase domain-containing protein
2626	 68.35	0	2859032..2862307	+	1091	167646599	-	Caul_2637	-	transglutaminase domain-containing protein
2627	 68.88	0	2862297..2864828	+	843	167646600	-	Caul_2638	-	hypothetical protein
2628	 67.67	0	2864825..2865724	+	299	167646601	-	Caul_2639	-	transglutaminase domain-containing protein
2629	 68.08	0	2865893..2866882	+	329	167646602	-	Caul_2640	-	AraC family transcriptional regulator
2630	 69.72	0	2866876..2867562	-	228	167646603	-	Caul_2641	-	ThiJ/PfpI domain-containing protein
2631	 67.07	0	2867577..2868806	-	409	167646604	-	Caul_2642	-	di-haem cytochrome c peroxidase
2632	 66.45	0	2868803..2869258	-	151	167646605	-	Caul_2643	-	hypothetical protein
2633	 67.83	0	2869683..2870111	+	142	167646606	-	Caul_2644	-	hypothetical protein
2634	 69.70	0	2870291..2871412	+	373	167646607	-	Caul_2645	-	ThiJ/PfpI domain-containing protein
2635	 65.20	0	2871511..2873826	-	771	167646608	-	Caul_2646	-	TonB-dependent receptor plug
2636	 68.16	0	2873929..2876472	-	847	167646609	-	Caul_2647	-	TonB-dependent receptor
2637	 61.43	-1	2876748..2877320	+	190	167646610	-	Caul_2648	-	ECF subfamily RNA polymerase sigma-24 factor
2638	 69.29	0	2877274..2878302	+	342	167646611	-	Caul_2649	-	anti-FecI sigma factor, FecR
2639	 66.20	0	2878378..2881173	-	931	167646612	-	Caul_2650	-	hypothetical protein
2640	 67.81	0	2881383..2882864	+	493	167646613	-	Caul_2651	-	amidohydrolase
2641	 66.67	0	2882961..2883173	+	70	167646614	-	Caul_2652	-	hypothetical protein
2642	 64.52	0	2883225..2884202	+	325	167646615	-	Caul_2653	-	sodium:dicarboxylate symporter
2643	 63.66	-1	2884683..2885981	+	432	167646616	-	Caul_2654	-	integrase catalytic region
2644	 60.81	-1	2887266..2887538	-	90	167646617	-	Caul_2655	-	hypothetical protein
2645	 71.58	0	2888391..2889224	-	277	167646618	-	Caul_2656	-	LysR family transcriptional regulator
2646	 69.63	0	2889368..2890177	+	269	167646619	-	Caul_2657	-	binding-protein-dependent transport systems inner membrane component
2647	 72.43	+1	2890180..2890995	+	271	167646620	-	Caul_2658	-	ABC transporter related
2648	 71.01	0	2890992..2892164	+	390	167646621	-	Caul_2659	-	acyl-CoA dehydrogenase type 2
2649	 71.61	0	2892161..2893111	+	316	167646622	-	Caul_2660	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
2650	 68.21	0	2893123..2893965	+	280	167646623	-	Caul_2661	-	class II aldolase/adducin family protein
2651	 68.67	0	2893965..2894963	+	332	167646624	-	Caul_2662	-	extracellular solute-binding protein
2652	 66.03	0	2895087..2897273	+	728	167646625	-	Caul_2663	-	TonB-dependent receptor
2653	 69.23	0	2897278..2897901	+	207	167646626	-	Caul_2664	-	cysteine dioxygenase type I
2654	 72.05	+1	2897898..2899475	+	525	167646627	-	Caul_2665	-	rhodanese domain-containing protein
2655	 69.42	0	2899487..2900140	+	217	167646628	-	Caul_2666	-	glutathione S-transferase domain-containing protein
2656	 69.22	0	2900235..2901329	+	364	167646629	-	Caul_2667	-	alkanesulfonate monooxygenase
2657	 71.26	0	2901334..2901921	+	195	167646630	-	Caul_2668	-	flavin reductase domain-containing protein
2658	 65.48	0	2901975..2902565	-	196	167646631	-	Caul_2669	-	hypothetical protein
2659	 71.32	0	2902650..2903744	-	364	167646632	-	Caul_2670	-	ribonuclease Z
2660	 67.99	0	2903852..2904760	+	302	167646633	-	Caul_2671	-	haloalkane dehalogenase
2661	 65.47	0	2904774..2905190	+	138	167646634	-	Caul_2672	-	hypothetical protein
2662	 71.12	0	2905289..2906344	-	351	167646635	-	Caul_2673	-	hypothetical protein
2663	 65.77	0	2906332..2908011	-	559	167646636	-	Caul_2674	-	sulfatase
2664	 67.95	0	2908103..2908492	-	129	167646637	-	Caul_2675	-	hypothetical protein
2665	 66.67	0	2908599..2909276	+	225	167646638	-	Caul_2676	-	DSBA oxidoreductase
2666	 65.09	0	2909504..2911783	+	759	167646639	-	Caul_2677	-	TonB-dependent receptor plug
2667	 72.39	+1	2911780..2912967	+	395	167646640	-	Caul_2678	-	putative MFS transporter
2668	 66.38	0	2913036..2913737	+	233	167646641	-	Caul_2679	-	TetR family transcriptional regulator
2669	 67.84	0	2913779..2915053	+	424	167646642	-	Caul_2680	-	FAD-linked oxidoreductase
2670	 70.31	0	2915067..2916218	+	383	167646643	-	Caul_2681	-	alanine racemase domain-containing protein
2671	 67.31	0	2916229..2916846	-	205	167646644	-	Caul_2682	-	hypothetical protein
2672	 69.28	0	2916985..2917674	-	229	167646645	-	Caul_2683	-	ECF subfamily RNA polymerase sigma-24 factor
2673	 63.97	0	2918067..2918660	-	197	167646646	-	Caul_2684	-	twin-arginine translocation pathway signal
2674	 63.08	-1	2919004..2919672	+	222	167646647	-	Caul_2685	-	two component LuxR family transcriptional regulator
2675	 60.57	-1	2919952..2920197	-	81	167646648	-	Caul_2686	-	hypothetical protein
2676	 70.79	0	2920448..2921416	-	322	167646649	-	Caul_2687	-	LysR family transcriptional regulator
2677	 70.35	0	2921565..2922650	+	361	167646650	-	Caul_2688	-	secretion protein HlyD family protein
2678	 64.97	0	2922647..2924182	+	511	167646651	-	Caul_2689	-	EmrB/QacA family drug resistance transporter
2679	 73.05	+1	2924166..2925623	+	485	167646652	-	Caul_2690	-	RND efflux system outer membrane lipoprotein
2680	 69.86	0	2925835..2926053	+	72	167646653	-	Caul_2691	-	hypothetical protein
2681	 61.75	-1	2926050..2926232	+	60	167646654	-	Caul_2692	-	hypothetical protein
2682	 65.17	0	2926233..2926433	+	66	167646655	-	Caul_2693	-	hypothetical protein
2683	 67.09	0	2926487..2927194	-	235	167646656	-	Caul_2694	-	two component transcriptional regulator
2684	 70.82	0	2927202..2929895	-	897	167646657	-	Caul_2695	-	osmosensitive K+ channel signal transduction histidine kinase
2685	 68.90	0	2930025..2930831	-	268	167646658	-	Caul_2696	-	hypothetical protein
2686	 67.04	0	2930828..2931622	-	264	167646659	-	Caul_2697	-	TatD family hydrolase
2687	 72.14	+1	2931627..2932631	-	334	167646660	-	Caul_2698	-	DNA polymerase III, delta prime subunit
2688	 71.61	0	2932634..2933260	-	208	167646661	-	Caul_2699	-	dTMP kinase
2689	 69.59	0	2933315..2934271	-	318	167646662	-	Caul_2700	-	rare lipoprotein A
2690	 65.68	0	2934574..2936199	+	541	167646663	-	Caul_2701	-	zinc finger SWIM domain-containing protein
2691	 64.83	0	2936171..2936713	-	180	167646664	-	Caul_2702	-	hypothetical protein
2692	 70.15	0	2936867..2937784	+	305	167646665	-	Caul_2703	-	methyltransferase small
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.