IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2457	 70.08	0	2686567..2686947	+	126	167646430	-	Caul_2468	-	cytochrome c class I
2458	 67.98	0	2687077..2687838	-	253	167646431	-	Caul_2469	-	hypothetical protein
2459	 66.88	0	2687838..2688785	-	315	167646432	-	Caul_2470	-	beta-lactamase domain-containing protein
2460	 69.90	0	2688861..2689634	+	257	167646433	-	Caul_2471	-	hypothetical protein
2461	 68.06	0	2689650..2690009	-	119	167646434	-	Caul_2472	-	ArsR family transcriptional regulator
2462	 67.95	0	2690030..2693230	-	1066	167646435	-	Caul_2473	-	acriflavin resistance protein
2463	 70.63	0	2693227..2694261	-	344	167646436	-	Caul_2474	-	RND family efflux transporter MFP subunit
2464	 68.50	0	2694298..2694624	-	108	167646437	-	Caul_2475	-	rhodanese domain-containing protein
2465	 68.47	0	2694624..2694956	-	110	167646438	-	Caul_2476	-	ArsR family transcriptional regulator
2466	 65.18	0	2695076..2696356	+	426	167646439	-	Caul_2477	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2467	 70.13	0	2696373..2696834	+	153	167646440	-	Caul_2478	-	thioredoxin domain-containing protein
2468	 62.75	-1	2696837..2697040	+	67	167646441	-	Caul_2479	-	hypothetical protein
2469	 67.24	0	2697081..2698133	-	350	167646442	-	Caul_2480	-	histidine kinase
2470	 64.40	0	2698178..2698618	-	146	167646443	-	Caul_2481	-	peptidase M15A
2471	 68.60	0	2698770..2699339	+	189	167646444	-	Caul_2482	-	2'-5' RNA ligase
2472	 72.26	+1	2699465..2700877	-	470	167646445	-	Caul_2483	-	transcriptional regulator
2473	 68.42	0	2700913..2701311	+	132	167646446	-	Caul_2484	-	hypothetical protein
2474	 64.50	0	2701395..2702132	-	245	167646447	-	Caul_2485	-	protein of unknown function DUF899 thioredoxin family protein
2475	 68.90	0	2702209..2702655	+	148	167646448	-	Caul_2486	-	MarR family transcriptional regulator
2476	 63.31	-1	2702773..2703129	+	118	167646449	-	Caul_2487	-	arsenate reductase and related
2477	 68.48	0	2703130..2703789	+	219	167646450	-	Caul_2488	-	HAD family hydrolase
2478	 65.10	0	2703833..2704024	+	63	167646451	-	Caul_2489	-	hypothetical protein
2479	 65.02	0	2704064..2704489	+	141	167646452	-	Caul_2490	-	hypothetical protein
2480	 72.48	+1	2704489..2705004	+	171	167646453	-	Caul_2491	-	ECF subfamily RNA polymerase sigma-24 factor
2481	 72.33	+1	2705001..2705300	+	99	167646454	-	Caul_2492	-	hypothetical protein
2482	 64.63	0	2705469..2705861	+	130	167646455	-	Caul_2493	-	hypothetical protein
2483	 67.86	0	2705893..2706480	+	195	167646456	-	Caul_2494	-	ECF subfamily RNA polymerase sigma-24 factor
2484	 69.77	0	2706932..2707768	+	278	167646457	-	Caul_2495	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2485	 69.15	0	2707955..2708719	+	254	167646458	-	Caul_2496	-	TPR repeat-containing protein
2486	 68.98	0	2708716..2710143	+	475	167646459	-	Caul_2497	-	Pyrrolo-quinoline quinone
2487	 68.21	0	2710252..2712060	+	602	167646460	-	Caul_2498	-	GTP-binding protein EngA
2488	 70.87	0	2712057..2712959	-	300	167646461	-	Caul_2499	-	thioredoxin-disulfide reductase
2489	 72.91	+1	2713092..2713844	-	250	167646462	-	Caul_2500	-	short-chain dehydrogenase/reductase SDR
2490	 67.49	0	2713886..2714860	-	324	167646463	-	Caul_2501	-	bile acid:sodium symporter
2491	 68.13	0	2715008..2716510	-	500	167646464	-	Caul_2502	-	amidophosphoribosyltransferase
2492	 69.07	0	2716507..2717130	-	207	167646465	-	Caul_2503	-	colicin V production protein
2493	 69.63	0	2717127..2718509	-	460	167646466	-	Caul_2504	-	DNA repair protein RadA
2494	 65.91	0	2718682..2719869	+	395	167646467	-	Caul_2505	-	hypothetical protein
2495	 72.58	+1	2719942..2721024	-	360	167646468	-	Caul_2506	-	alanine racemase
2496	 69.88	0	2721091..2721774	-	227	167646469	-	Caul_2507	-	multiple antibiotic resistance (MarC)-related protein
2497	 67.54	0	2721877..2723358	-	493	167646470	-	Caul_2508	-	replicative DNA helicase
2498	 66.83	0	2723571..2725982	-	803	167646471	-	Caul_2509	-	TonB-dependent receptor
2499	 64.62	0	2726181..2726765	-	194	167646472	-	Caul_2510	-	50S ribosomal protein L9
2500	 67.03	0	2726779..2727057	-	92	167646473	-	Caul_2511	-	30S ribosomal protein S18
2501	 61.68	-1	2727073..2727453	-	126	167646474	-	Caul_2512	-	ribosomal protein S6
2502	 67.92	0	2727713..2728432	+	239	167646475	-	Caul_2513	-	hypothetical protein
2503	 65.92	0	2728436..2729239	-	267	167646476	-	Caul_2514	-	fatty acid hydroxylase
2504	 71.30	0	2729311..2730432	-	373	167646477	-	Caul_2515	-	AraC family transcriptional regulator
2505	 68.12	0	2730523..2731074	-	183	167646478	-	Caul_2516	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2506	 70.58	0	2731302..2732246	+	314	167646479	-	Caul_2517	-	malonyl CoA-acyl carrier protein transacylase
2507	 68.42	0	2732390..2733130	+	246	167646480	-	Caul_2518	-	3-oxoacyl-(acyl-carrier-protein) reductase
2508	 57.92	-2	2733319..2733558	+	79	167646481	-	Caul_2519	-	acyl carrier protein
2509	 67.45	0	2733731..2735011	+	426	167646482	-	Caul_2520	-	3-oxoacyl-(acyl carrier protein) synthase II
2510	 70.78	0	2735008..2736126	+	372	167646483	-	Caul_2521	-	aminodeoxychorismate lyase
2511	 69.39	0	2736128..2737009	+	293	167646484	-	Caul_2522	-	hypothetical protein
2512	 66.36	0	2736999..2737643	+	214	167646485	-	Caul_2523	-	guanylate kinase
2513	 58.70	-2	2737685..2737960	+	91	167646486	-	Caul_2524	-	hypothetical protein
2514	 69.09	0	2738236..2739102	-	288	167646487	-	Caul_2525	-	dimethyladenosine transferase
2515	 72.64	+1	2739224..2740228	-	334	167646488	-	Caul_2526	-	4-hydroxythreonine-4-phosphate dehydrogenase
2516	 67.99	0	2740225..2741583	-	452	167646489	-	Caul_2527	-	SurA domain-containing protein
2517	 65.24	0	2741660..2744110	-	816	167646490	-	Caul_2528	-	organic solvent tolerance protein
2518	 67.93	0	2744139..2745242	-	367	167646491	-	Caul_2529	-	permease YjgP/YjgQ family protein
2519	 64.64	0	2745239..2746375	-	378	167646492	-	Caul_2530	-	permease YjgP/YjgQ family protein
2520	 68.76	0	2746612..2748093	+	493	167646493	-	Caul_2531	-	leucyl aminopeptidase
2521	 69.48	0	2748096..2748557	+	153	167646494	-	Caul_2532	-	DNA polymerase III subunit chi
2522	 71.15	0	2748554..2748910	+	118	167646495	-	Caul_2533	-	hypothetical protein
2523	 71.18	0	2749005..2749646	-	213	167646496	-	Caul_2534	-	hypothetical protein
2524	 68.40	0	2749715..2750119	-	134	167646497	-	Caul_2535	-	hypothetical protein
2525	 68.71	0	2750341..2750928	+	195	167646498	-	Caul_2536	-	hypothetical protein
2526	 67.99	0	2750925..2752808	-	627	167646499	-	Caul_2537	-	ABC transporter related
2527	 62.62	-1	2752910..2753329	+	139	167646500	-	Caul_2538	-	nucleoside-diphosphate kinase
2528	 67.09	0	2753399..2755063	-	554	167646501	-	Caul_2539	-	integral membrane sensor signal transduction histidine kinase
2529	 69.15	0	2755197..2755880	+	227	167646502	-	Caul_2540	-	hypothetical protein
2530	 73.64	+1	2755946..2756590	+	214	167646503	-	Caul_2541	-	hypothetical protein
2531	 67.73	0	2756596..2757813	-	405	167646504	-	Caul_2542	-	membrane dipeptidase
2532	 64.66	0	2757870..2760260	-	796	167646505	-	Caul_2543	-	TonB-dependent receptor
2533	 71.48	0	2760907..2761488	-	193	167646506	-	Caul_2544	-	phosphoribosylglycinamide formyltransferase
2534	 70.08	0	2761651..2762676	-	341	167646507	-	Caul_2545	-	phosphoribosylaminoimidazole synthetase
2535	 68.97	0	2762790..2763959	+	389	167646508	-	Caul_2546	-	ribonuclease D
2536	 71.15	0	2763963..2766059	-	698	167646509	-	Caul_2547	-	histidine kinase
2537	 64.30	0	2766256..2769261	-	1001	167646510	-	Caul_2548	-	TonB-dependent receptor
2538	 73.05	+1	2769734..2771221	-	495	167646511	-	Caul_2549	-	Ppx/GppA phosphatase
2539	 71.43	0	2771318..2771779	-	153	167646512	-	Caul_2550	-	hypothetical protein
2540	 68.28	0	2771776..2774004	-	742	167646513	-	Caul_2551	-	polyphosphate kinase
2541	 74.79	+1	2774311..2775012	-	233	167646514	-	Caul_2552	-	DnaA-related protein
2542	 44.13	-2	2775138..2775767	-	209	167646515	-	Caul_2553	-	hypothetical protein
2543	 46.52	-2	2775760..2776866	-	368	167646516	-	Caul_2554	-	hypothetical protein
2544	 68.39	0	2776970..2777725	+	251	167646517	-	Caul_2555	-	hypothetical protein
2545	 65.79	0	2778066..2778407	-	113	167646518	-	Caul_2556	-	hypothetical protein
2546	 66.89	0	2778447..2780276	+	609	167646519	-	Caul_2557	-	aspartyl-tRNA synthetase
2547	 71.25	0	2780359..2781297	-	312	167646520	-	Caul_2558	-	pentapeptide repeat-containing protein
2548	 70.93	0	2781395..2781886	-	163	167646521	-	Caul_2559	-	pentapeptide repeat-containing protein
2549	 72.03	+1	2781956..2784712	-	918	167646522	-	Caul_2560	-	ribonucleotide reductase-related protein
2550	 64.96	0	2784944..2785354	+	136	167646523	-	Caul_2561	-	NADH dehydrogenase
2551	 72.81	+1	2785356..2786039	+	227	167646524	-	Caul_2562	-	hypothetical protein
2552	 67.58	0	2785976..2786629	-	217	167646525	-	Caul_2563	-	leucyl/phenylalanyl-tRNA--protein transferase
2553	 64.73	0	2786657..2788000	-	447	167646526	-	Caul_2564	-	acetyl-CoA carboxylase biotin carboxylase subunit
2554	 68.99	0	2788006..2788521	-	171	167646527	-	Caul_2565	-	acetyl-CoA carboxylase, biotin carboxyl carrier protein
2555	 63.51	-1	2788564..2789007	-	147	167646528	-	Caul_2566	-	3-dehydroquinate dehydratase
2556	 65.67	0	2789087..2789287	+	66	167646529	-	Caul_2567	-	thiamine biosynthesis protein ThiS
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.