IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2355	 64.27	0	2566892..2568145	-	417	167646328	-	Caul_2366	-	sarcosine oxidase beta subunit family protein
2356	 64.32	0	2568263..2569198	+	311	167646329	-	Caul_2367	-	AraC family transcriptional regulator
2357	 63.30	-1	2569397..2571535	+	712	167646330	-	Caul_2368	-	TonB-dependent receptor
2358	 66.37	0	2571651..2572994	+	447	167646331	-	Caul_2369	-	major facilitator transporter
2359	 66.00	0	2573079..2573975	+	298	167646332	-	Caul_2370	-	putative esterase
2360	 65.94	0	2574026..2576098	+	690	167646333	-	Caul_2371	-	prolyl oligopeptidase
2361	 65.43	0	2576185..2577801	+	538	167646334	-	Caul_2372	-	gamma-glutamyltransferase
2362	 63.49	-1	2577858..2579558	+	566	167646335	-	Caul_2373	-	hypothetical protein
2363	 63.23	-1	2579555..2580484	+	309	167646336	-	Caul_2374	-	hypothetical protein
2364	 67.26	0	2580567..2582084	-	505	167646337	-	Caul_2375	-	aldehyde dehydrogenase
2365	 68.07	0	2582117..2583400	-	427	167646338	-	Caul_2376	-	FAD dependent oxidoreductase
2366	 64.44	0	2583510..2584406	+	298	167646339	-	Caul_2377	-	LysR family transcriptional regulator
2367	 74.11	+1	2584725..2585060	+	111	167646340	-	Caul_2378	-	hypothetical protein
2368	 71.14	0	2585053..2585544	+	163	167646341	-	Caul_2379	-	hypothetical protein
2369	 72.49	+1	2585521..2588544	-	1007	167646342	-	Caul_2380	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
2370	 68.37	0	2588874..2589461	+	195	167646343	-	Caul_2381	-	ECF subfamily RNA polymerase sigma-24 factor
2371	 75.19	+1	2589567..2590481	+	304	167646344	-	Caul_2382	-	regulatory protein PupR, putative
2372	 69.11	0	2590565..2593345	+	926	167646345	-	Caul_2383	-	TonB-dependent receptor
2373	 69.16	0	2593361..2594485	+	374	167646346	-	Caul_2384	-	glycerophosphoryl diester phosphodiesterase
2374	 68.51	0	2594632..2595501	-	289	167646347	-	Caul_2385	-	LysR family transcriptional regulator
2375	 69.05	0	2595606..2596610	+	334	167646348	-	Caul_2386	-	alcohol dehydrogenase
2376	 69.05	0	2596591..2597220	+	209	167646349	-	Caul_2387	-	AraC family transcriptional regulator
2377	 66.09	0	2597279..2597626	-	115	167646350	-	Caul_2388	-	alkylhydroperoxidase
2378	 63.64	-1	2597795..2598256	-	153	167646351	-	Caul_2389	-	hypothetical protein
2379	 66.84	0	2598521..2599111	+	196	167646352	-	Caul_2390	-	AraC family transcriptional regulator
2380	 69.88	0	2599403..2602267	+	954	167646353	-	Caul_2391	-	transcriptional regulator
2381	 70.98	0	2602459..2603781	+	440	167646354	-	Caul_2392	-	aldehyde dehydrogenase
2382	 71.23	0	2603785..2604507	+	240	167646355	-	Caul_2393	-	alpha/beta hydrolase fold
2383	 68.07	0	2604676..2605104	+	142	167646356	-	Caul_2394	-	hypothetical protein
2384	 68.68	0	2605272..2606213	-	313	167646357	-	Caul_2395	-	beta-lactamase domain-containing protein
2385	 64.29	0	2606647..2607024	-	125	167646358	-	Caul_2396	-	hypothetical protein
2386	 64.66	0	2607195..2607743	-	182	167646359	-	Caul_2397	-	hypothetical protein
2387	 65.86	0	2607831..2608574	-	247	167646360	-	Caul_2398	-	short-chain dehydrogenase/reductase SDR
2388	 65.64	0	2608709..2609680	+	323	167646361	-	Caul_2399	-	AraC family transcriptional regulator
2389	 65.17	0	2609677..2612691	-	1004	167646362	-	Caul_2400	-	TonB-dependent receptor
2390	 68.65	0	2613199..2614155	-	318	167646363	-	Caul_2401	-	LacI family transcription regulator
2391	 67.60	0	2614933..2615892	-	319	167646364	-	Caul_2402	-	hypothetical protein
2392	 68.63	0	2615952..2617886	-	644	167646365	-	Caul_2403	-	protein of unknown function DUF303 acetylesterase putative
2393	 68.45	0	2618000..2620696	-	898	167646366	-	Caul_2404	-	Beta-glucosidase
2394	 68.28	0	2620747..2622915	-	722	167646367	-	Caul_2405	-	hypothetical protein
2395	 65.18	0	2622912..2624456	-	514	167646368	-	Caul_2406	-	tryptophan halogenase
2396	 63.21	-1	2624525..2627479	-	984	167646369	-	Caul_2407	-	TonB-dependent receptor
2397	 64.16	0	2627783..2628460	+	225	167646370	-	Caul_2408	-	SapC family protein
2398	 66.76	0	2628457..2629491	+	344	167646371	-	Caul_2409	-	hypothetical protein
2399	 64.98	0	2629526..2631601	-	691	167646372	-	Caul_2410	-	Alpha-N-arabinofuranosidase
2400	 64.95	0	2631861..2632967	+	368	167646373	-	Caul_2411	-	putative esterase
2401	 67.25	0	2633003..2634898	+	631	167646374	-	Caul_2412	-	Alpha-galactosidase
2402	 67.82	0	2634996..2636561	+	521	167646375	-	Caul_2413	-	glycoside hydrolase family protein
2403	 71.13	0	2636576..2637337	-	253	167646376	-	Caul_2414	-	GntR domain-containing protein
2404	 64.78	0	2637476..2639065	-	529	167646377	-	Caul_2415	-	Alpha-N-arabinofuranosidase
2405	 66.09	0	2639352..2640575	+	407	167646378	-	Caul_2416	-	hypothetical protein
2406	 68.54	0	2640575..2641696	+	373	167646379	-	Caul_2417	-	glycosyl transferase group 1
2407	 66.05	0	2641704..2642681	+	325	167646380	-	Caul_2418	-	acid phosphatase
2408	 66.14	0	2642777..2643343	-	188	167646381	-	Caul_2419	-	cytochrome B561
2409	 65.38	0	2643456..2643923	-	155	167646382	-	Caul_2420	-	rubrerythrin
2410	 62.01	-1	2644097..2644375	+	92	167646383	-	Caul_2421	-	hypothetical protein
2411	 66.02	0	2644382..2644996	+	204	167646384	-	Caul_2422	-	cytochrome B561
2412	 67.52	0	2644968..2645672	+	234	167646385	-	Caul_2423	-	two component transcriptional regulator
2413	 66.60	0	2645665..2647089	+	474	167646386	-	Caul_2424	-	integral membrane sensor signal transduction histidine kinase
2414	 72.41	+1	2647086..2647781	+	231	167646387	-	Caul_2425	-	hypothetical protein
2415	 68.94	0	2647810..2650224	-	804	167646388	-	Caul_2426	-	TonB-dependent receptor plug
2416	 69.03	0	2650253..2651227	-	324	167646389	-	Caul_2427	-	anti-FecI sigma factor, FecR
2417	 68.79	0	2651328..2651939	-	203	167646390	-	Caul_2428	-	ECF subfamily RNA polymerase sigma-24 factor
2418	 69.85	0	2652028..2652750	+	240	167646391	-	Caul_2429	-	hypothetical protein
2419	 70.80	0	2652747..2654198	+	483	167646392	-	Caul_2430	-	AMP-dependent synthetase and ligase
2420	 64.25	0	2654211..2654873	+	220	167646393	-	Caul_2431	-	hypothetical protein
2421	 64.94	0	2654866..2655618	+	250	167646394	-	Caul_2432	-	short-chain dehydrogenase/reductase SDR
2422	 69.70	0	2655638..2656297	+	219	167646395	-	Caul_2433	-	hypothetical protein
2423	 68.88	0	2656431..2657153	+	240	167646396	-	Caul_2434	-	phosphoesterase PA-phosphatase related
2424	 67.39	0	2657357..2658880	+	507	167646397	-	Caul_2435	-	methyl-accepting chemotaxis sensory transducer
2425	 68.48	0	2659035..2659310	-	91	167646398	-	Caul_2436	-	hypothetical protein
2426	 64.54	0	2659428..2661071	+	547	167646399	-	Caul_2437	-	cytochrome c oxidase, cbb3-type, subunit I
2427	 64.25	0	2661082..2661825	+	247	167646400	-	Caul_2438	-	cytochrome c oxidase, cbb3-type, subunit II
2428	 60.38	-1	2661830..2661988	+	52	167646401	-	Caul_2439	-	Cbb3-type cytochrome oxidase component
2429	 68.63	0	2661988..2662854	+	288	167646402	-	Caul_2440	-	cytochrome c oxidase, cbb3-type, subunit III
2430	 67.07	0	2662860..2664365	+	501	167646403	-	Caul_2441	-	cytochrome c oxidase accessory protein CcoG
2431	 70.81	0	2664362..2664844	+	160	167646404	-	Caul_2442	-	FixH family protein
2432	 71.19	0	2664841..2667006	+	721	167646405	-	Caul_2443	-	heavy metal translocating P-type ATPase
2433	 68.48	0	2667003..2667167	+	54	167646406	-	Caul_2444	-	cytochrome oxidase maturation protein, cbb3-type
2434	 63.57	-1	2667332..2667976	+	214	167646407	-	Caul_2445	-	OmpW family protein
2435	 69.86	0	2668431..2669681	+	416	167646408	-	Caul_2446	-	hypothetical protein
2436	 67.29	0	2669859..2670986	+	375	167646409	-	Caul_2447	-	patatin
2437	 68.22	0	2671158..2671286	+	42	167646410	-	Caul_2448	-	hypothetical protein
2438	 70.38	0	2671288..2672283	+	331	167646411	-	Caul_2449	-	zinc-binding alcohol dehydrogenase family protein
2439	 65.17	0	2672389..2672988	-	199	167646412	-	Caul_2450	-	NAD(P)H dehydrogenase (quinone)
2440	 68.68	0	2673115..2673561	+	148	167646413	-	Caul_2451	-	hypothetical protein
2441	 68.80	0	2673640..2675283	+	547	167646414	-	Caul_2452	-	beta-lactamase domain-containing protein
2442	 67.88	0	2675360..2675689	+	109	167646415	-	Caul_2453	-	hypothetical protein
2443	 68.61	0	2675981..2676856	+	291	167646416	-	Caul_2454	-	UspA domain-containing protein
2444	 69.33	0	2676886..2677374	-	162	167646417	-	Caul_2455	-	NUDIX hydrolase
2445	 67.44	0	2677426..2677941	-	171	167646418	-	Caul_2456	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
2446	 66.50	0	2677982..2678596	-	204	167646419	-	Caul_2457	-	Crp/FNR family transcriptional regulator
2447	 70.36	0	2678772..2681453	-	893	167646420	-	Caul_2458	-	CoA-binding domain-containing protein
2448	 65.33	0	2681543..2681767	+	74	167646421	-	Caul_2459	-	response regulator receiver protein
2449	 67.93	0	2681849..2682244	+	131	167646422	-	Caul_2460	-	response regulator receiver protein
2450	 67.05	0	2682358..2683392	+	344	167646423	-	Caul_2461	-	alcohol dehydrogenase
2451	 69.14	0	2683404..2683808	+	134	167646424	-	Caul_2462	-	cytochrome c class I
2452	 64.74	0	2683943..2684098	+	51	167646425	-	Caul_2463	-	hypothetical protein
2453	 73.30	+1	2684269..2684826	+	185	167646426	-	Caul_2464	-	hypothetical protein
2454	 67.71	0	2685219..2685506	+	95	167646427	-	Caul_2465	-	hypothetical protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.