IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1938	 66.19	0	2087011..2087433	+	140	167645911	-	Caul_1947	-	hypothetical protein
1939	 70.03	0	2087433..2088920	+	495	167645912	-	Caul_1948	-	RND efflux system outer membrane lipoprotein
1940	 70.03	0	2088917..2089987	+	356	167645913	-	Caul_1949	-	secretion protein HlyD family protein
1941	 66.63	0	2089984..2092749	+	921	167645914	-	Caul_1950	-	ABC transporter related
1942	 65.60	0	2092751..2093872	+	373	167645915	-	Caul_1951	-	ABC-2 type transporter
1943	 68.03	0	2093970..2094410	+	146	167645916	-	Caul_1952	-	hypothetical protein
1944	 65.91	0	2094465..2095652	-	395	167645917	-	Caul_1953	-	acetyl-CoA acetyltransferase
1945	 68.25	0	2095785..2096987	-	400	167645918	-	Caul_1954	-	acetate kinase
1946	 68.22	0	2096989..2098407	-	472	167645919	-	Caul_1955	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
1947	 67.06	0	2098411..2100171	-	586	167645920	-	Caul_1956	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
1948	 63.57	-1	2100430..2101494	+	354	167645921	-	Caul_1957	-	hypothetical protein
1949	 68.65	0	2101597..2102352	-	251	167645922	-	Caul_1958	-	short-chain dehydrogenase/reductase SDR
1950	 64.34	0	2102428..2102985	-	185	167645923	-	Caul_1959	-	hypothetical protein
1951	 61.69	-1	2103025..2103486	-	153	167645924	-	Caul_1960	-	hypothetical protein
1952	 65.16	0	2103871..2104467	-	198	167645925	-	Caul_1961	-	ECF subfamily RNA polymerase sigma-24 factor
1953	 67.00	0	2104660..2105871	-	403	167645926	-	Caul_1962	-	patatin
1954	 64.79	0	2106128..2106766	-	212	167645927	-	Caul_1963	-	hypothetical protein
1955	 66.95	0	2106907..2107263	-	118	167645928	-	Caul_1964	-	hypothetical protein
1956	 69.57	0	2107744..2108019	-	91	167645929	-	Caul_1965	-	hypothetical protein
1957	 67.01	0	2108034..2108615	+	193	167645930	-	Caul_1966	-	hypothetical protein
1958	 69.78	0	2108530..2111319	-	929	167645931	-	Caul_1967	-	TonB-dependent receptor plug
1959	 71.71	+1	2111346..2112356	-	336	167645932	-	Caul_1968	-	anti-FecI sigma factor, FecR
1960	 67.38	0	2112360..2112923	-	187	167645933	-	Caul_1969	-	ECF subfamily RNA polymerase sigma-24 factor
1961	 67.04	0	2113133..2116063	+	976	167645934	-	Caul_1970	-	TonB-dependent receptor
1962	 68.46	0	2116125..2117072	+	315	167645935	-	Caul_1971	-	glycerophosphoryl diester phosphodiesterase
1963	 66.67	0	2117115..2117831	+	238	167645936	-	Caul_1972	-	phosphoglycerate mutase
1964	 63.46	-1	2119372..2120775	+	467	167645937	-	Caul_1974	-	Rieske (2Fe-2S) domain-containing protein
1965	 64.39	0	2120818..2121387	+	189	167645938	-	Caul_1975	-	aromatic-ring-hydroxylating dioxygenase beta subunit
1966	 63.70	-1	2121410..2122723	+	437	167645939	-	Caul_1976	-	amidohydrolase 2
1967	 63.80	-1	2123001..2124605	+	534	167645940	-	Caul_1977	-	histidine kinase
1968	 65.71	0	2125051..2126298	+	415	167645941	-	Caul_1978	-	hypothetical protein
1969	 68.19	0	2126588..2127310	+	240	167645942	-	Caul_1979	-	methyltransferase type 11
1970	 69.60	0	2127528..2127800	-	90	167645943	-	Caul_1980	-	hypothetical protein
1971	 74.33	+1	2127986..2128807	+	273	167645944	-	Caul_1981	-	hypothetical protein
1972	 64.38	0	2129368..2129847	-	159	167645945	-	Caul_1982	-	helix-turn-helix domain-containing protein
1973	 67.42	0	2130182..2130841	+	219	167645946	-	Caul_1983	-	GntR family transcriptional regulator
1974	 57.50	-2	2130910..2131029	+	39	167645947	-	Caul_1984	-	hypothetical protein
1975	 70.27	0	2131323..2131961	+	212	167645948	-	Caul_1985	-	hypothetical protein
1976	 71.23	0	2131961..2133712	+	583	167645949	-	Caul_1986	-	asparagine synthase
1977	 71.05	0	2133707..2136148	-	813	167645950	-	Caul_1987	-	peptidase S9 prolyl oligopeptidase
1978	 69.64	0	2136193..2139255	-	1020	167645951	-	Caul_1988	-	TonB-dependent receptor
1979	 72.95	+1	2139478..2140512	-	344	167645952	-	Caul_1989	-	anti-FecI sigma factor, FecR
1980	 67.60	0	2140526..2141062	-	178	167645953	-	Caul_1990	-	ECF subfamily RNA polymerase sigma-24 factor
1981	 59.52	-2	2141204..2141413	+	69	167645954	-	Caul_1991	-	XRE family transcriptional regulator
1982	 63.11	-1	2141505..2141729	+	74	167645955	-	Caul_1992	-	XRE family transcriptional regulator
1983	 60.26	-1	2142090..2143010	-	306	167645956	-	Caul_1993	-	hypothetical protein
1984	 56.75	-2	2143015..2143518	-	167	167645957	-	Caul_1994	-	XRE family transcriptional regulator
1985	 60.98	-1	2143531..2144163	-	210	167645958	-	Caul_1995	-	hypothetical protein
1986	 56.02	-2	2144167..2144382	-	71	167645959	-	Caul_1996	-	transcriptional regulator
1987	 62.38	-1	2144538..2144957	+	139	167645960	-	Caul_1997	-	hypothetical protein
1988	 62.47	-1	2144957..2145361	+	134	167645961	-	Caul_1998	-	hypothetical protein
1989	 63.13	-1	2145364..2146776	+	470	167645962	-	Caul_1999	-	UBA/THIF-type NAD/FAD binding protein
1990	 66.39	0	2146773..2147132	+	119	167645963	-	Caul_2000	-	hypothetical protein
1991	 52.90	-2	2147215..2148318	+	367	167645964	-	Caul_2001	-	thymidylate synthase
1992	 67.60	0	2148253..2149113	-	286	167645965	-	Caul_2002	-	integrase catalytic region
1993	 66.35	0	2149110..2149424	-	104	167645966	-	Caul_2003	-	transposase IS3/IS911 family protein
1994	 65.96	0	2149372..2150082	-	236	167645967	-	Caul_2004	-	methyltransferase type 11
1995	 70.01	0	2150449..2151225	+	258	167645968	-	Caul_2005	-	hypothetical protein
1996	 63.12	-1	2151285..2152496	+	403	167645969	-	Caul_2006	-	integrase family protein
1997	 63.59	-1	2152493..2153434	+	313	167645970	-	Caul_2007	-	integrase family protein
1998	 65.36	0	2153431..2154423	+	330	167645971	-	Caul_2008	-	integrase family protein
1999	 66.67	0	2154426..2154869	+	147	167645972	-	Caul_2009	-	antirestriction protein-like protein
2000	 69.07	0	2154866..2155240	+	124	167645973	-	Caul_2010	-	hypothetical protein
2001	 69.07	0	2155392..2157218	+	608	167645974	-	Caul_2011	-	nuclease
2002	 68.09	0	2157386..2157736	-	116	167645975	-	Caul_2012	-	hypothetical protein
2003	 66.67	0	2158009..2158335	+	108	167645976	-	Caul_2013	-	hypothetical protein
2004	 67.78	0	2158522..2158791	+	89	167645977	-	Caul_2014	-	hypothetical protein
2005	 71.26	0	2158784..2159305	+	173	167645978	-	Caul_2015	-	conjugal transfer protein TraF
2006	 69.67	0	2159293..2159925	+	210	167645979	-	Caul_2016	-	lytic transglycosylase catalytic
2007	 71.14	0	2160178..2162166	+	662	167645980	-	Caul_2017	-	hypothetical protein
2008	 66.89	0	2162340..2162777	-	145	167645981	-	Caul_2018	-	PilT domain-containing protein
2009	 65.13	0	2162774..2163424	-	216	167645982	-	Caul_2019	-	hypothetical protein
2010	 69.68	0	2163946..2164809	-	287	167645983	-	Caul_2020	-	S1/P1 nuclease
2011	 69.94	0	2164943..2165278	+	111	167645984	-	Caul_2021	-	hypothetical protein
2012	 66.55	0	2165286..2166176	+	296	167645985	-	Caul_2022	-	DNA polymerase III subunit epsilon
2013	 62.22	-1	2166245..2166469	+	74	167645986	-	Caul_2023	-	hypothetical protein
2014	 65.60	0	2166618..2167739	-	373	167645987	-	Caul_2024	-	DNA-directed DNA polymerase
2015	 68.34	0	2167970..2170006	+	678	167645988	-	Caul_2025	-	TRAG family protein
2016	 68.86	0	2170019..2170429	+	136	167645989	-	Caul_2026	-	CopG/DNA-binding domain-containing protein
2017	 69.86	0	2170426..2171427	+	333	167645990	-	Caul_2027	-	P-type conjugative transfer ATPase TrbB
2018	 64.33	0	2171427..2171768	+	113	167645991	-	Caul_2028	-	conjugal transfer protein TrbC
2019	 68.77	0	2171765..2172049	+	94	167645992	-	Caul_2029	-	putative conjugal transfer TrbD transmembrane protein
2020	 67.77	0	2172043..2174484	+	813	167645993	-	Caul_2030	-	CagE TrbE VirB component of type IV transporter system
2021	 69.00	0	2174481..2175209	+	242	167645994	-	Caul_2031	-	P-type conjugative transfer protein TrbJ
2022	 70.07	0	2175247..2176596	+	449	167645995	-	Caul_2032	-	P-type conjugative transfer protein TrbL
2023	 66.79	0	2176600..2177385	+	261	167645996	-	Caul_2033	-	conjugal transfer protein
2024	 68.60	0	2177382..2178365	+	327	167645997	-	Caul_2034	-	P-type conjugative transfer protein TrbG
2025	 68.42	0	2178362..2179561	+	399	167645998	-	Caul_2035	-	conjugation TrbI family protein
2026	 59.46	-2	2179575..2179796	+	73	167645999	-	Caul_2036	-	hypothetical protein
2027	 65.42	0	2179799..2180200	+	133	167646000	-	Caul_2037	-	hypothetical protein
2028	 66.31	0	2180274..2180555	+	93	167646001	-	Caul_2038	-	hypothetical protein
2029	 68.75	0	2180552..2181223	-	223	167646002	-	Caul_2039	-	phospholipase/carboxylesterase
2030	 64.87	0	2181380..2181769	+	129	167646003	-	Caul_2040	-	hypothetical protein
2031	 62.60	-1	2182034..2182918	+	294	167646004	-	Caul_2041	-	hypothetical protein
2032	 62.39	-1	2182925..2183977	-	350	167646005	-	Caul_2042	-	integrase family protein
2033	 68.92	0	2184131..2185108	+	325	167646006	-	Caul_2043	-	tRNA-dihydrouridine synthase A
2034	 69.26	0	2185113..2185613	-	166	167646007	-	Caul_2044	-	hypothetical protein
2035	 62.50	-1	2185890..2186249	+	119	167646008	-	Caul_2045	-	hypothetical protein
2036	 69.26	0	2186256..2186486	-	76	167646009	-	Caul_2046	-	hypothetical protein
2037	 73.72	+1	2186568..2187446	+	292	167646010	-	Caul_2047	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.