IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1895	 67.92	0	2041869..2042663	-	264	167645868	-	Caul_1904	-	enoyl-CoA hydratase/isomerase
1896	 68.85	0	2042734..2044014	-	426	167645869	-	Caul_1905	-	major facilitator transporter
1897	 69.50	0	2044252..2045274	+	340	167645870	-	Caul_1906	-	alcohol dehydrogenase
1898	 64.52	0	2045486..2047117	+	543	167645871	-	Caul_1907	-	AMP-dependent synthetase and ligase
1899	 64.07	0	2047294..2049561	+	755	167645872	-	Caul_1908	-	TonB-dependent receptor plug
1900	 67.57	0	2049666..2050547	+	293	167645873	-	Caul_1909	-	5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase
1901	 68.60	0	2050550..2051323	-	257	167645874	-	Caul_1910	-	short-chain dehydrogenase/reductase SDR
1902	 65.20	0	2051569..2054022	+	817	167645875	-	Caul_1911	-	TonB-dependent receptor
1903	 64.87	0	2054206..2055486	-	426	167645876	-	Caul_1912	-	cytochrome P450
1904	 65.91	0	2055591..2055989	-	132	167645877	-	Caul_1913	-	limonene-12-epoxide hydrolase
1905	 65.21	0	2056109..2056657	+	182	167645878	-	Caul_1914	-	glutathione peroxidase
1906	 70.12	0	2056705..2057631	-	308	167645879	-	Caul_1915	-	alcohol dehydrogenase
1907	 66.32	0	2057719..2058300	-	193	167645880	-	Caul_1916	-	aromatic-ring-hydroxylating dioxygenase beta subunit
1908	 63.62	-1	2058332..2059708	-	458	167645881	-	Caul_1917	-	Rieske (2Fe-2S) domain-containing protein
1909	 64.38	0	2059858..2060076	+	72	167645882	-	Caul_1918	-	hypothetical protein
1910	 66.81	0	2060073..2061458	+	461	167645883	-	Caul_1919	-	major facilitator transporter
1911	 68.91	0	2061455..2062213	+	252	167645884	-	Caul_1920	-	short-chain dehydrogenase/reductase SDR
1912	 63.39	-1	2062241..2063155	+	304	167645885	-	Caul_1921	-	glyoxalase/bleomycin resistance protein/dioxygenase
1913	 65.81	0	2063155..2063967	+	270	167645886	-	Caul_1922	-	short-chain dehydrogenase/reductase SDR
1914	 68.36	0	2063991..2064818	+	275	167645887	-	Caul_1923	-	short-chain dehydrogenase/reductase SDR
1915	 66.67	0	2064809..2065522	+	237	167645888	-	Caul_1924	-	short-chain dehydrogenase/reductase SDR
1916	 67.01	0	2065519..2066385	-	288	167645889	-	Caul_1925	-	short-chain dehydrogenase/reductase SDR
1917	 64.59	0	2066549..2067223	+	224	167645890	-	Caul_1926	-	TetR family transcriptional regulator
1918	 68.32	0	2067232..2068077	-	281	167645891	-	Caul_1927	-	fumarylacetoacetate (FAA) hydrolase
1919	 66.89	0	2068099..2068542	-	147	167645892	-	Caul_1928	-	hypothetical protein
1920	 63.88	-1	2068614..2069690	-	358	167645893	-	Caul_1929	-	amidohydrolase 2
1921	 67.63	0	2069979..2071334	+	451	167645894	-	Caul_1930	-	major facilitator transporter
1922	 64.72	0	2071356..2072384	-	342	167645895	-	Caul_1931	-	amidohydrolase 2
1923	 70.69	0	2072491..2073708	+	405	167645896	-	Caul_1932	-	major facilitator transporter
1924	 69.40	0	2073738..2074505	+	255	167645897	-	Caul_1933	-	short-chain dehydrogenase/reductase SDR
1925	 66.87	0	2074633..2075121	+	162	167645898	-	Caul_1934	-	UspA domain-containing protein
1926	 68.33	0	2075109..2076674	-	521	167645899	-	Caul_1935	-	FAD dependent oxidoreductase
1927	 62.75	-1	2076671..2077027	-	118	167645900	-	Caul_1936	-	hypothetical protein
1928	 65.51	0	2077024..2078058	-	344	167645901	-	Caul_1937	-	hypothetical protein
1929	 68.47	0	2078103..2079434	-	443	167645902	-	Caul_1938	-	major facilitator transporter
1930	 68.54	0	2079434..2080234	-	266	167645903	-	Caul_1939	-	short-chain dehydrogenase/reductase SDR
1931	 67.75	0	2080263..2081090	-	275	167645904	-	Caul_1940	-	short-chain dehydrogenase/reductase SDR
1932	 64.25	0	2081178..2083208	-	676	167645905	-	Caul_1941	-	TonB-dependent receptor
1933	 59.05	-2	2083438..2083752	-	104	167645906	-	Caul_1942	-	carbonate dehydratase
1934	 67.60	0	2083783..2084643	-	286	167645907	-	Caul_1943	-	integrase catalytic region
1935	 66.35	0	2084640..2084954	-	104	167645908	-	Caul_1944	-	transposase IS3/IS911 family protein
1936	 62.98	-1	2085365..2086042	-	225	167645909	-	Caul_1945	-	TetR family transcriptional regulator
1937	 64.75	0	2086196..2086924	+	242	167645910	-	Caul_1946	-	acetoacetyl-CoA reductase
1938	 66.19	0	2087011..2087433	+	140	167645911	-	Caul_1947	-	hypothetical protein
1939	 70.03	0	2087433..2088920	+	495	167645912	-	Caul_1948	-	RND efflux system outer membrane lipoprotein
1940	 70.03	0	2088917..2089987	+	356	167645913	-	Caul_1949	-	secretion protein HlyD family protein
1941	 66.63	0	2089984..2092749	+	921	167645914	-	Caul_1950	-	ABC transporter related
1942	 65.60	0	2092751..2093872	+	373	167645915	-	Caul_1951	-	ABC-2 type transporter
1943	 68.03	0	2093970..2094410	+	146	167645916	-	Caul_1952	-	hypothetical protein
1944	 65.91	0	2094465..2095652	-	395	167645917	-	Caul_1953	-	acetyl-CoA acetyltransferase
1945	 68.25	0	2095785..2096987	-	400	167645918	-	Caul_1954	-	acetate kinase
1946	 68.22	0	2096989..2098407	-	472	167645919	-	Caul_1955	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
1947	 67.06	0	2098411..2100171	-	586	167645920	-	Caul_1956	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
1948	 63.57	-1	2100430..2101494	+	354	167645921	-	Caul_1957	-	hypothetical protein
1949	 68.65	0	2101597..2102352	-	251	167645922	-	Caul_1958	-	short-chain dehydrogenase/reductase SDR
1950	 64.34	0	2102428..2102985	-	185	167645923	-	Caul_1959	-	hypothetical protein
1951	 61.69	-1	2103025..2103486	-	153	167645924	-	Caul_1960	-	hypothetical protein
1952	 65.16	0	2103871..2104467	-	198	167645925	-	Caul_1961	-	ECF subfamily RNA polymerase sigma-24 factor
1953	 67.00	0	2104660..2105871	-	403	167645926	-	Caul_1962	-	patatin
1954	 64.79	0	2106128..2106766	-	212	167645927	-	Caul_1963	-	hypothetical protein
1955	 66.95	0	2106907..2107263	-	118	167645928	-	Caul_1964	-	hypothetical protein
1956	 69.57	0	2107744..2108019	-	91	167645929	-	Caul_1965	-	hypothetical protein
1957	 67.01	0	2108034..2108615	+	193	167645930	-	Caul_1966	-	hypothetical protein
1958	 69.78	0	2108530..2111319	-	929	167645931	-	Caul_1967	-	TonB-dependent receptor plug
1959	 71.71	+1	2111346..2112356	-	336	167645932	-	Caul_1968	-	anti-FecI sigma factor, FecR
1960	 67.38	0	2112360..2112923	-	187	167645933	-	Caul_1969	-	ECF subfamily RNA polymerase sigma-24 factor
1961	 67.04	0	2113133..2116063	+	976	167645934	-	Caul_1970	-	TonB-dependent receptor
1962	 68.46	0	2116125..2117072	+	315	167645935	-	Caul_1971	-	glycerophosphoryl diester phosphodiesterase
1963	 66.67	0	2117115..2117831	+	238	167645936	-	Caul_1972	-	phosphoglycerate mutase
1964	 63.46	-1	2119372..2120775	+	467	167645937	-	Caul_1974	-	Rieske (2Fe-2S) domain-containing protein
1965	 64.39	0	2120818..2121387	+	189	167645938	-	Caul_1975	-	aromatic-ring-hydroxylating dioxygenase beta subunit
1966	 63.70	-1	2121410..2122723	+	437	167645939	-	Caul_1976	-	amidohydrolase 2
1967	 63.80	-1	2123001..2124605	+	534	167645940	-	Caul_1977	-	histidine kinase
1968	 65.71	0	2125051..2126298	+	415	167645941	-	Caul_1978	-	hypothetical protein
1969	 68.19	0	2126588..2127310	+	240	167645942	-	Caul_1979	-	methyltransferase type 11
1970	 69.60	0	2127528..2127800	-	90	167645943	-	Caul_1980	-	hypothetical protein
1971	 74.33	+1	2127986..2128807	+	273	167645944	-	Caul_1981	-	hypothetical protein
1972	 64.38	0	2129368..2129847	-	159	167645945	-	Caul_1982	-	helix-turn-helix domain-containing protein
1973	 67.42	0	2130182..2130841	+	219	167645946	-	Caul_1983	-	GntR family transcriptional regulator
1974	 57.50	-2	2130910..2131029	+	39	167645947	-	Caul_1984	-	hypothetical protein
1975	 70.27	0	2131323..2131961	+	212	167645948	-	Caul_1985	-	hypothetical protein
1976	 71.23	0	2131961..2133712	+	583	167645949	-	Caul_1986	-	asparagine synthase
1977	 71.05	0	2133707..2136148	-	813	167645950	-	Caul_1987	-	peptidase S9 prolyl oligopeptidase
1978	 69.64	0	2136193..2139255	-	1020	167645951	-	Caul_1988	-	TonB-dependent receptor
1979	 72.95	+1	2139478..2140512	-	344	167645952	-	Caul_1989	-	anti-FecI sigma factor, FecR
1980	 67.60	0	2140526..2141062	-	178	167645953	-	Caul_1990	-	ECF subfamily RNA polymerase sigma-24 factor
1981	 59.52	-2	2141204..2141413	+	69	167645954	-	Caul_1991	-	XRE family transcriptional regulator
1982	 63.11	-1	2141505..2141729	+	74	167645955	-	Caul_1992	-	XRE family transcriptional regulator
1983	 60.26	-1	2142090..2143010	-	306	167645956	-	Caul_1993	-	hypothetical protein
1984	 56.75	-2	2143015..2143518	-	167	167645957	-	Caul_1994	-	XRE family transcriptional regulator
1985	 60.98	-1	2143531..2144163	-	210	167645958	-	Caul_1995	-	hypothetical protein
1986	 56.02	-2	2144167..2144382	-	71	167645959	-	Caul_1996	-	transcriptional regulator
1987	 62.38	-1	2144538..2144957	+	139	167645960	-	Caul_1997	-	hypothetical protein
1988	 62.47	-1	2144957..2145361	+	134	167645961	-	Caul_1998	-	hypothetical protein
1989	 63.13	-1	2145364..2146776	+	470	167645962	-	Caul_1999	-	UBA/THIF-type NAD/FAD binding protein
1990	 66.39	0	2146773..2147132	+	119	167645963	-	Caul_2000	-	hypothetical protein
1991	 52.90	-2	2147215..2148318	+	367	167645964	-	Caul_2001	-	thymidylate synthase
1992	 67.60	0	2148253..2149113	-	286	167645965	-	Caul_2002	-	integrase catalytic region
1993	 66.35	0	2149110..2149424	-	104	167645966	-	Caul_2003	-	transposase IS3/IS911 family protein
1994	 65.96	0	2149372..2150082	-	236	167645967	-	Caul_2004	-	methyltransferase type 11
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.