IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
130	 64.35	0	143047..144210	-	387	167644103	-	Caul_0130	-	acyl-CoA dehydrogenase domain-containing protein
131	 66.67	0	144213..146003	-	596	167644104	-	Caul_0131	-	acyl-CoA dehydrogenase domain-containing protein
132	 67.91	0	146094..146576	-	160	167644105	-	Caul_0132	-	MerR family transcriptional regulator
133	 71.36	0	146748..147407	+	219	167644106	-	Caul_0133	-	putative phage repressor
134	 64.29	0	147428..147637	-	69	167644107	-	Caul_0134	-	hypothetical protein
135	 68.07	0	147774..148769	-	331	167644108	-	Caul_0135	-	NAD-dependent epimerase/dehydratase
136	 68.51	0	149019..149993	-	324	167644109	-	Caul_0136	-	UDP-glucose 4-epimerase
137	 66.43	0	150106..151764	-	552	167644110	-	Caul_0137	-	lysyl-tRNA synthetase
138	 50.00	-2	151893..152516	+	207	167644111	-	Caul_0138	-	hypothetical protein
139	 62.84	-1	153547..154671	+	374	167644112	-	Caul_0139	-	hypothetical protein
140	 67.79	0	154759..155292	+	177	167644113	-	Caul_0140	-	Lipocalin family protein
141	 66.89	0	155553..155999	+	148	167644114	-	Caul_0141	-	ECF subfamily RNA polymerase sigma-24 factor
142	 71.57	0	155996..157075	+	359	167644115	-	Caul_0142	-	anti-FecI sigma factor, FecR
143	 67.55	0	157133..159727	+	864	167644116	-	Caul_0143	-	TonB-dependent receptor plug
144	 69.78	0	159878..161485	+	535	167644117	-	Caul_0144	-	Alpha,alpha-trehalase
145	 69.90	0	161590..162456	+	288	167644118	-	Caul_0145	-	dienelactone hydrolase
146	 68.08	0	162632..163552	+	306	167644119	-	Caul_0146	-	alpha/beta hydrolase fold
147	 72.57	+1	163564..164037	+	157	167644120	-	Caul_0147	-	hypothetical protein
148	 68.05	0	164271..165866	+	531	167644121	-	Caul_0148	-	amine oxidase
149	 70.49	0	165940..167196	-	418	167644122	-	Caul_0149	-	ROK family protein
150	 72.95	+1	167331..168269	+	312	167644123	-	Caul_0150	-	ROK family protein
151	 69.93	0	169318..171798	+	826	167644124	-	Caul_0152	-	glycoside hydrolase family 3 protein
152	 70.25	0	171937..172410	+	157	167644125	-	Caul_0153	-	ybaK/ebsC protein
153	 68.51	0	172554..173528	-	324	167644126	-	Caul_0154	-	MarR family transcriptional regulator
154	 71.88	+1	173892..174908	+	338	167644127	-	Caul_0155	-	hypothetical protein
155	 64.01	0	175037..175600	+	187	167644128	-	Caul_0156	-	Ricin B lectin
156	 67.43	0	175652..178144	-	830	167644129	-	Caul_0157	-	DNA gyrase subunit B
157	 71.93	+1	178141..179319	-	392	167644130	-	Caul_0158	-	recombination protein F
158	 68.67	0	179531..180280	-	249	167644131	-	Caul_0159	-	short-chain dehydrogenase/reductase SDR
159	 65.60	0	180360..180734	-	124	167644132	-	Caul_0160	-	hypothetical protein
160	 62.19	-1	181173..181931	-	252	167644133	-	Caul_0161	-	hypothetical protein
161	 66.93	0	182015..183133	-	372	167644134	-	Caul_0162	-	DNA polymerase III subunit beta
162	 65.90	0	183407..183925	-	172	167644135	-	Caul_0163	-	methionine sulfoxide reductase A
163	 76.42	+2	184034..184402	-	122	167644136	-	Caul_0164	-	hypothetical protein
164	 69.58	0	184468..185085	-	205	167644137	-	Caul_0165	-	GrpE protein
165	 68.62	0	185097..186173	-	358	167644138	-	Caul_0166	-	heat-inducible transcription repressor
166	 68.31	0	186297..187025	+	242	167644139	-	Caul_0167	-	ribonuclease PH
167	 65.37	0	187160..187390	-	76	167644140	-	Caul_0168	-	XRE family transcriptional regulator
168	 65.36	0	187411..187944	-	177	167644141	-	Caul_0169	-	hypothetical protein
169	 68.33	0	188022..188201	-	59	167644142	-	Caul_0170	-	hypothetical protein
170	 70.15	0	188284..188886	-	200	167644143	-	Caul_0171	-	glutathione S-transferase domain-containing protein
171	 71.12	0	188914..189519	+	201	167644144	-	Caul_0172	-	putative deoxyribonucleotide triphosphate pyrophosphatase
172	 70.88	0	189643..190806	+	387	167644145	-	Caul_0173	-	oxygen-independent coproporphyrinogen III oxidase
173	 73.22	+1	190887..191771	+	294	167644146	-	Caul_0174	-	uroporphyrin-III C/tetrapyrrole methyltransferase
174	 71.90	+1	191768..192187	+	139	167644147	-	Caul_0175	-	hypothetical protein
175	 73.16	+1	192184..192999	+	271	167644148	-	Caul_0176	-	hypothetical protein
176	 67.47	0	193091..193591	+	166	167644149	-	Caul_0177	-	TspO and MBR like protein
177	 66.77	0	193794..194747	+	317	167644150	-	Caul_0178	-	glutathione synthetase
178	 73.44	+1	194870..196420	+	516	167644151	-	Caul_0179	-	Mg chelatase, subunit ChlI
179	 69.05	0	196417..196878	+	153	167644152	-	Caul_0180	-	GCN5-related N-acetyltransferase
180	 68.30	0	197077..197751	-	224	167644153	-	Caul_0181	-	OmpA/MotB domain-containing protein
181	 66.88	0	197970..198905	+	311	167644154	-	Caul_0182	-	2OG-Fe(II) oxygenase
182	 65.78	0	199040..200728	-	562	167644155	-	Caul_0183	-	Flp pilus assembly protein TadG
183	 67.81	0	200833..202662	-	609	167644156	-	Caul_0184	-	peptidyl-dipeptidase A
184	 67.49	0	202834..204048	+	404	167644157	-	Caul_0185	-	radical SAM protein
185	 69.30	0	204048..204464	+	138	167644158	-	Caul_0186	-	hypothetical protein
186	 55.62	-2	204494..204991	-	165	167644159	-	Caul_0187	-	hypothetical protein
187	 70.40	0	205820..206248	+	142	167644160	-	Caul_0188	-	hypothetical protein
188	 75.48	+1	206271..207110	+	279	167644161	-	Caul_0189	-	hypothetical protein
189	 68.86	0	207254..208984	-	576	167644162	-	Caul_0190	-	major facilitator transporter
190	 72.31	+1	209019..210614	-	531	167644163	-	Caul_0191	-	histidine kinase
191	 69.85	0	210668..211201	-	177	167644164	-	Caul_0192	-	GCN5-related N-acetyltransferase
192	 63.37	-1	211402..211674	-	90	167644165	-	Caul_0193	-	50S ribosomal protein L27
193	 66.67	0	211754..212269	-	171	167644166	-	Caul_0194	-	ribosomal protein L21
194	 69.70	0	212456..213082	+	208	167644167	-	Caul_0195	-	hypothetical protein
195	 65.11	0	213274..214368	+	364	167644168	-	Caul_0196	-	cobalamin synthesis protein P47K
196	 65.75	0	214561..214998	-	145	167644169	-	Caul_0197	-	biopolymer transport protein ExbD/TolR
197	 62.89	-1	215150..215599	-	149	167644170	-	Caul_0198	-	biopolymer transport protein ExbD/TolR
198	 70.38	0	215835..216857	+	340	167644171	-	Caul_0199	-	WD-40 repeat-containing protein
199	 68.44	0	216929..217606	-	225	167644172	-	Caul_0200	-	nitroreductase
200	 66.81	0	217700..218377	+	225	167644173	-	Caul_0201	-	monofunctional biosynthetic peptidoglycan transglycosylase
201	 70.70	0	218389..218934	+	181	167644174	-	Caul_0202	-	GCN5-related N-acetyltransferase
202	 63.68	-1	218946..219146	-	66	167644175	-	Caul_0203	-	hypothetical protein
203	 67.16	0	219312..219716	+	134	167644176	-	Caul_0204	-	membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG)
204	 67.69	0	219807..220493	+	228	167644177	-	Caul_0205	-	lysine exporter protein LysE/YggA
205	 70.10	0	220606..221217	+	203	167644178	-	Caul_0206	-	hypothetical protein
206	 69.22	0	221290..222072	-	260	167644179	-	Caul_0207	-	short-chain dehydrogenase/reductase SDR
207	 69.03	0	222127..222549	+	140	167644180	-	Caul_0208	-	hypothetical protein
208	 71.56	0	222542..223174	+	210	167644181	-	Caul_0209	-	YhhN family protein
209	 69.12	0	223345..223833	+	162	167644182	-	Caul_0210	-	GCN5-related N-acetyltransferase
210	 65.95	0	223940..226045	+	701	167644183	-	Caul_0211	-	catalase
211	 68.89	0	226196..227815	-	539	167644184	-	Caul_0212	-	AMP-dependent synthetase and ligase
212	 69.71	0	227881..228933	-	350	167644185	-	Caul_0213	-	3-isopropylmalate dehydrogenase
213	 68.65	0	228946..229248	-	100	167644186	-	Caul_0214	-	antibiotic biosynthesis monooxygenase
214	 63.55	-1	229385..229993	-	202	167644187	-	Caul_0215	-	3-isopropylmalate dehydratase, small subunit
215	 68.95	0	229993..231435	-	480	167644188	-	Caul_0216	-	isopropylmalate isomerase large subunit
216	 66.41	0	231848..232243	-	131	167644189	-	Caul_0217	-	50S ribosomal protein L19
217	 65.31	0	232248..232985	-	245	167644190	-	Caul_0218	-	tRNA (guanine-N1)-methyltransferase
218	 71.28	0	233161..233355	-	64	167644191	-	Caul_0219	-	hypothetical protein
219	 71.89	+1	233648..234451	+	267	167644192	-	Caul_0220	-	hypothetical protein
220	 67.66	0	234502..237423	+	973	167644193	-	Caul_0221	-	DNA polymerase I
221	 69.62	0	237725..239653	+	642	167644194	-	Caul_0222	-	methyl-accepting chemotaxis sensory transducer
222	 72.10	+1	239719..240510	-	263	167644195	-	Caul_0223	-	response regulator receiver protein
223	 69.71	0	240598..241155	+	185	167644196	-	Caul_0224	-	hypothetical protein
224	 69.02	0	241236..241958	+	240	167644197	-	Caul_0225	-	TetR family transcriptional regulator
225	 65.59	0	242157..244394	+	745	167644198	-	Caul_0226	-	TonB-dependent receptor
226	 69.48	0	244486..245802	+	438	167644199	-	Caul_0227	-	major facilitator transporter
227	 69.90	0	245883..249257	+	1124	167644200	-	Caul_0228	-	polysaccharide deacetylase
228	 65.67	0	249510..250709	+	399	167644201	-	Caul_0229	-	succinyl-CoA synthetase subunit beta
229	 67.23	0	250715..251599	+	294	167644202	-	Caul_0230	-	succinyl-CoA synthetase, alpha subunit
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.