IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1413	 63.31	-1	1511511..1512047	+	178	167645386	-	Caul_1421	-	hemerythrin HHE cation binding region protein
1414	 68.02	0	1512095..1512610	+	171	167645387	-	Caul_1422	-	CinA domain-containing protein
1415	 65.12	0	1512678..1512935	-	85	167645388	-	Caul_1423	-	transglycosylase-associated protein
1416	 68.33	0	1513085..1513204	-	39	167645389	-	Caul_1424	-	hypothetical protein
1417	 69.20	0	1513375..1514715	-	446	167645390	-	Caul_1425	-	NHL repeat-containing protein
1418	 69.69	0	1515083..1515844	-	253	167645391	-	Caul_1426	-	GntR domain-containing protein
1419	 65.59	0	1515994..1517205	+	403	167645392	-	Caul_1427	-	mandelate racemase/muconate lactonizing protein
1420	 69.20	0	1517283..1517795	-	170	167645393	-	Caul_1428	-	hypothetical protein
1421	 67.22	0	1517903..1518619	-	238	167645394	-	Caul_1429	-	flagellar basal body L-ring protein
1422	 71.10	0	1518634..1519377	-	247	167645395	-	Caul_1430	-	flagellar basal body P-ring formation protein FlgA
1423	 65.15	0	1519382..1520170	-	262	167645396	-	Caul_1431	-	flagellar basal body rod protein FlgG
1424	 65.18	0	1520184..1520921	-	245	167645397	-	Caul_1432	-	flagellar basal body rod protein
1425	 65.85	0	1521146..1521757	+	203	167645398	-	Caul_1433	-	flagellar basal body-associated protein FliL
1426	 65.70	0	1521788..1522921	+	377	167645399	-	Caul_1434	-	flagellar motor switch protein FliM
1427	 73.74	+1	1522918..1523511	+	197	167645400	-	Caul_1435	-	hypothetical protein
1428	 72.20	+1	1523508..1524284	+	258	167645401	-	Caul_1436	-	hypothetical protein
1429	 71.67	+1	1524307..1527186	+	959	167645402	-	Caul_1437	-	tetratricopeptide TPR_4
1430	 66.94	0	1527442..1528905	+	487	167645403	-	Caul_1438	-	glucose-6-phosphate 1-dehydrogenase
1431	 69.63	0	1528917..1529624	+	235	167645404	-	Caul_1439	-	6-phosphogluconolactonase
1432	 68.42	0	1529629..1531455	+	608	167645405	-	Caul_1440	-	phosphogluconate dehydratase
1433	 68.38	0	1531469..1532458	+	329	167645406	-	Caul_1441	-	glucokinase
1434	 67.35	0	1532719..1533744	+	341	167645407	-	Caul_1442	-	LacI family transcription regulator
1435	 71.42	0	1533967..1535397	+	476	167645408	-	Caul_1443	-	pyruvate kinase
1436	 69.54	0	1535552..1536247	-	231	167645409	-	Caul_1444	-	Crp/FNR family transcriptional regulator
1437	 70.63	0	1536696..1537829	-	377	167645410	-	Caul_1445	-	acyl-CoA dehydrogenase domain-containing protein
1438	 68.14	0	1537831..1538442	-	203	167645411	-	Caul_1446	-	DSBA oxidoreductase
1439	 66.83	0	1538461..1539666	-	401	167645412	-	Caul_1447	-	acyl-CoA dehydrogenase domain-containing protein
1440	 69.71	0	1539870..1541543	+	557	167645413	-	Caul_1448	-	hypothetical protein
1441	 66.20	0	1541503..1541715	-	70	167645414	-	Caul_1449	-	hypothetical protein
1442	 70.74	0	1541929..1544922	+	997	167645415	-	Caul_1450	-	peptidoglycan binding domain-containing protein
1443	 66.46	0	1545086..1545565	+	159	167645416	-	Caul_1451	-	hypothetical protein
1444	 69.14	0	1545580..1546065	-	161	167645417	-	Caul_1452	-	hypothetical protein
1445	 71.71	+1	1546148..1546861	-	237	167645418	-	Caul_1453	-	hypothetical protein
1446	 69.49	0	1546875..1549349	-	824	167645419	-	Caul_1454	-	DEAD/DEAH box helicase domain-containing protein
1447	 72.14	+1	1549465..1550232	-	255	167645420	-	Caul_1455	-	hypothetical protein
1448	 73.17	+1	1550259..1553147	+	962	167645421	-	Caul_1456	-	helicase c2
1449	 68.91	0	1553384..1553650	+	88	167645422	-	Caul_1457	-	hypothetical protein
1450	 67.52	0	1553696..1554280	+	194	167645423	-	Caul_1458	-	hexapaptide repeat-containing transferase
1451	 70.33	0	1554337..1554882	-	181	167645424	-	Caul_1459	-	MOSC domain-containing protein
1452	 68.12	0	1554887..1557301	-	804	167645425	-	Caul_1460	-	UvrD/REP helicase
1453	 65.17	0	1557425..1557625	+	66	167645426	-	Caul_1461	-	hypothetical protein
1454	 70.89	0	1557628..1557864	+	78	167645427	-	Caul_1462	-	hypothetical protein
1455	 70.65	0	1557868..1558143	-	91	167645428	-	Caul_1463	-	hypothetical protein
1456	 69.86	0	1558225..1559007	+	260	167645429	-	Caul_1464	-	putative uncharacterized protein involved in ubiquinone biosynthesis
1457	 67.10	0	1559135..1560061	+	308	167645430	-	Caul_1465	-	glyoxalase/bleomycin resistance protein/dioxygenase
1458	 71.79	+1	1560386..1561303	-	305	167645431	-	Caul_1466	-	LysR family transcriptional regulator
1459	 68.33	0	1561390..1561569	+	59	167645432	-	Caul_1467	-	hypothetical protein
1460	 67.23	0	1561715..1561891	-	58	167645433	-	Caul_1468	-	hypothetical protein
1461	 69.63	0	1561895..1562872	-	325	167645434	-	Caul_1469	-	hypothetical protein
1462	 63.71	-1	1563078..1563314	+	78	167645435	-	Caul_1470	-	hypothetical protein
1463	 67.76	0	1563381..1564022	+	213	167645436	-	Caul_1471	-	glutathione S-transferase domain-containing protein
1464	 70.52	0	1564159..1565664	-	501	167645437	-	Caul_1472	-	PepSY-associated TM helix domain-containing protein
1465	 75.79	+2	1565675..1566277	-	200	167645438	-	Caul_1473	-	hypothetical protein
1466	 67.97	0	1566281..1568428	-	715	167645439	-	Caul_1474	-	TonB-dependent siderophore receptor
1467	 74.27	+1	1568537..1569115	-	192	167645440	-	Caul_1475	-	SCP-like extracellular
1468	 65.27	0	1569208..1570281	-	357	167645441	-	Caul_1476	-	signal transduction histidine kinase
1469	 63.74	-1	1570393..1570563	-	56	167645442	-	Caul_1477	-	hypothetical protein
1470	 62.45	-1	1570695..1570955	-	86	167645443	-	Caul_1478	-	hypothetical protein
1471	 66.25	0	1571283..1572485	-	400	167645444	-	Caul_1479	-	aspartate aminotransferase
1472	 70.00	0	1572711..1573250	-	179	167645445	-	Caul_1480	-	NADPH-dependent FMN reductase
1473	 71.73	+1	1573311..1573982	-	223	167645446	-	Caul_1481	-	cobyrinic acid ac-diamide synthase
1474	 71.62	0	1574164..1574829	-	221	167645447	-	Caul_1482	-	ParA family protein
1475	 69.23	0	1575094..1575834	+	246	167645448	-	Caul_1483	-	SNARE associated Golgi protein
1476	 68.37	0	1575841..1577655	-	604	167645449	-	Caul_1484	-	hypothetical protein
1477	 66.92	0	1578108..1579682	+	524	167645450	-	Caul_1485	-	2-isopropylmalate synthase
1478	 72.15	+1	1579756..1580229	-	157	167645451	-	Caul_1486	-	hypothetical protein
1479	 70.49	0	1580357..1580932	+	191	167645452	-	Caul_1487	-	O-methyltransferase family protein
1480	 72.35	+1	1580929..1581807	+	292	167645453	-	Caul_1488	-	hypothetical protein
1481	 66.57	0	1582160..1583203	+	347	167645454	-	Caul_1489	-	cell shape determining protein MreB
1482	 72.60	+1	1583345..1584490	+	381	167645455	-	Caul_1490	-	rod shape-determining protein MreC
1483	 68.82	0	1584493..1585002	+	169	167645456	-	Caul_1491	-	hypothetical protein
1484	 69.10	0	1585007..1587019	+	670	167645457	-	Caul_1492	-	penicillin-binding protein 2
1485	 65.80	0	1587016..1588173	+	385	167645458	-	Caul_1493	-	rod shape-determining protein RodA
1486	 70.72	0	1588319..1589575	-	418	167645459	-	Caul_1494	-	DNA polymerase IV
1487	 67.59	0	1589572..1590219	-	215	167645460	-	Caul_1495	-	hypothetical protein
1488	 59.11	-2	1590327..1590710	+	127	167645461	-	Caul_1496	-	response regulator receiver protein
1489	 69.08	0	1590715..1592079	+	454	167645462	-	Caul_1497	-	response regulator PleD
1490	 64.85	0	1592254..1593024	-	256	167645463	-	Caul_1498	-	glutamine cyclotransferase
1491	 54.17	-2	1593126..1593293	-	55	167645464	-	Caul_1499	-	50S ribosomal protein L33
1492	 73.39	+1	1593423..1594151	-	242	167645465	-	Caul_1500	-	NUDIX hydrolase
1493	 69.44	0	1594435..1595730	+	431	167645466	-	Caul_1501	-	amidohydrolase
1494	 70.22	0	1595911..1598244	-	777	167645467	-	Caul_1502	-	ribonuclease R
1495	 63.28	-1	1598306..1599427	-	373	167645468	-	Caul_1503	-	hypothetical protein
1496	 72.73	+1	1599703..1600065	-	120	167645469	-	Caul_1504	-	hypothetical protein
1497	 68.38	0	1600098..1602788	-	896	167645470	-	Caul_1505	-	DNA topoisomerase I
1498	 68.85	0	1602943..1603263	-	106	167645471	-	Caul_1506	-	XRE family transcriptional regulator
1499	 57.80	-2	1603274..1603555	-	93	167645472	-	Caul_1507	-	hypothetical protein
1500	 75.11	+1	1603608..1604708	-	366	167645473	-	Caul_1508	-	DNA protecting protein DprA
1501	 70.99	0	1604708..1605355	-	215	167645474	-	Caul_1509	-	hypothetical protein
1502	 60.64	-1	1605497..1605778	-	93	167645475	-	Caul_1510	-	plasmid stabilization system protein
1503	 66.67	0	1605768..1606013	-	81	167645476	-	Caul_1511	-	CopG/Arc/MetJ family addiction module antidote protein
1504	 68.46	0	1606168..1606836	-	222	167645477	-	Caul_1512	-	hypothetical protein
1505	 45.55	-2	1606970..1607362	-	130	167645478	-	Caul_1513	-	hypothetical protein
1506	 66.67	0	1607449..1607934	-	161	167645479	-	Caul_1514	-	hypothetical protein
1507	 69.01	0	1607931..1608614	-	227	167645480	-	Caul_1515	-	HlyD family secretion protein
1508	 71.80	+1	1608669..1609973	-	434	167645481	-	Caul_1516	-	dihydroorotase, multifunctional complex type
1509	 69.54	0	1610128..1611135	-	335	167645482	-	Caul_1517	-	aspartate carbamoyltransferase catalytic subunit
1510	 68.89	0	1611243..1611737	-	164	167645483	-	Caul_1518	-	Holliday junction resolvase YqgF
1511	 69.10	0	1611819..1612106	+	95	167645484	-	Caul_1519	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
1512	 69.45	0	1612106..1613578	+	490	167645485	-	Caul_1520	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.