IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1348	 67.65	0	1440903..1442123	+	406	167645321	-	Caul_1356	-	hypothetical protein
1349	 66.90	0	1442340..1442765	+	141	167645322	-	Caul_1357	-	MucR family transcriptional regulator
1350	 69.89	0	1442779..1443801	-	340	167645323	-	Caul_1358	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
1351	 70.88	0	1444260..1444757	+	165	167645324	-	Caul_1359	-	hypothetical protein
1352	 66.34	0	1444902..1447334	-	810	167645325	-	Caul_1360	-	TonB-dependent receptor
1353	 69.33	0	1447444..1448646	-	400	167645326	-	Caul_1361	-	acyl-CoA dehydrogenase domain-containing protein
1354	 72.74	+1	1448739..1449512	+	257	167645327	-	Caul_1362	-	LuxR family transcriptional regulator
1355	 72.04	+1	1449520..1450431	-	303	167645328	-	Caul_1363	-	ribokinase-like domain-containing protein
1356	 65.92	0	1450598..1451398	-	266	167645329	-	Caul_1364	-	flagellar biosynthesis protein FliP
1357	 71.47	0	1451398..1451709	-	103	167645330	-	Caul_1365	-	fliO protein
1358	 66.67	0	1451839..1452258	+	139	167645331	-	Caul_1366	-	flagellar basal body rod protein FlgB
1359	 66.43	0	1452271..1452693	+	140	167645332	-	Caul_1367	-	flagellar basal body rod protein FlgC
1360	 67.31	0	1452705..1453013	+	102	167645333	-	Caul_1368	-	flagellar hook-basal body protein FliE
1361	 66.67	0	1453118..1453420	+	100	167645334	-	Caul_1369	-	ArsR family transcriptional regulator
1362	 66.05	0	1453454..1454269	+	271	167645335	-	Caul_1370	-	short-chain dehydrogenase/reductase SDR
1363	 69.43	0	1454460..1454966	-	168	167645336	-	Caul_1371	-	GCN5-related N-acetyltransferase
1364	 67.00	0	1454963..1455262	-	99	167645337	-	Caul_1372	-	hypothetical protein
1365	 69.76	0	1455454..1456521	+	355	167645338	-	Caul_1373	-	ribosome small subunit-dependent GTPase A
1366	 73.08	+1	1456687..1456920	-	77	167645339	-	Caul_1374	-	hypothetical protein
1367	 72.16	+1	1457083..1457847	+	254	167645340	-	Caul_1375	-	ABC transporter related
1368	 72.03	+1	1457840..1459387	+	515	167645341	-	Caul_1376	-	substrate-binding region of ABC-type glycine betaine transport system
1369	 70.28	0	1459610..1461298	+	562	167645342	-	Caul_1377	-	type I phosphodiesterase/nucleotide pyrophosphatase
1370	 64.83	0	1461778..1464396	+	872	167645343	-	Caul_1378	-	TonB-dependent receptor
1371	 67.30	0	1464692..1466278	+	528	167645344	-	Caul_1379	-	L-amino-acid oxidase
1372	 70.65	0	1466320..1466721	+	133	167645345	-	Caul_1380	-	cytochrome c class I
1373	 68.47	0	1466815..1467312	+	165	167645346	-	Caul_1381	-	endoribonuclease L-PSP
1374	 65.15	0	1467589..1467852	+	87	167645347	-	Caul_1382	-	flagellar biosynthesis protein FliQ
1375	 66.80	0	1467864..1468619	+	251	167645348	-	Caul_1383	-	flagellar biosynthesis protein FliR
1376	 65.37	0	1468629..1469711	+	360	167645349	-	Caul_1384	-	flagellar biosynthesis protein FlhB
1377	 72.41	+1	1469920..1472007	+	695	167645350	-	Caul_1385	-	integral membrane sensor hybrid histidine kinase
1378	 67.64	0	1472043..1473380	-	445	167645351	-	Caul_1386	-	hypothetical protein
1379	 67.26	0	1473499..1475346	-	615	167645352	-	Caul_1387	-	methyl-accepting chemotaxis sensory transducer
1380	 71.56	0	1475814..1476344	-	176	167645353	-	Caul_1388	-	GCN5-related N-acetyltransferase
1381	 70.63	0	1476437..1476814	+	125	167645354	-	Caul_1389	-	hypothetical protein
1382	 66.67	0	1476940..1478769	+	609	167645355	-	Caul_1390	-	hypothetical protein
1383	 70.34	0	1478949..1480553	-	534	167645356	-	Caul_1391	-	diguanylate phosphodiesterase
1384	 64.05	0	1480838..1481908	+	356	167645357	-	Caul_1392	-	recombinase A
1385	 69.84	0	1482358..1483146	+	262	167645358	-	Caul_1393	-	hypothetical protein
1386	 70.25	0	1483301..1485952	+	883	167645359	-	Caul_1394	-	alanyl-tRNA synthetase
1387	 69.43	0	1486058..1486963	-	301	167645360	-	Caul_1395	-	AraC family transcriptional regulator
1388	 67.47	0	1487054..1487797	+	247	167645361	-	Caul_1396	-	short-chain dehydrogenase/reductase SDR
1389	 81.08	+2	1487973..1488083	+	36	167645362	-	Caul_1397	-	alanyl-tRNA synthetase
1390	 66.22	0	1488607..1489497	+	296	167645363	-	Caul_1398	-	AraC family transcriptional regulator
1391	 67.34	0	1489795..1491288	+	497	167645364	-	Caul_1399	-	amino acid permease-associated region
1392	 72.12	+1	1491323..1491964	-	213	167645365	-	Caul_1400	-	hypothetical protein
1393	 67.87	0	1491973..1492386	-	137	167645366	-	Caul_1401	-	hypothetical protein
1394	 67.89	0	1492406..1493059	-	217	167645367	-	Caul_1402	-	hypothetical protein
1395	 67.35	0	1493236..1493673	+	145	167645368	-	Caul_1403	-	hypothetical protein
1396	 73.14	+1	1493705..1494430	+	241	167645369	-	Caul_1404	-	phage shock protein A, PspA
1397	 67.96	0	1494850..1496007	+	385	167645370	-	Caul_1405	-	glutathionylspermidine synthase
1398	 68.37	0	1496123..1496827	+	234	167645371	-	Caul_1406	-	hypothetical protein
1399	 72.08	+1	1496885..1497475	+	196	167645372	-	Caul_1407	-	CDP-alcohol phosphatidyltransferase
1400	 67.05	0	1498173..1498694	+	173	167645373	-	Caul_1408	-	flavin reductase domain-containing protein
1401	 66.13	0	1498790..1500286	+	498	167645374	-	Caul_1409	-	methylmalonate-semialdehyde dehydrogenase
1402	 70.63	0	1500328..1501311	+	327	167645375	-	Caul_1410	-	peptidase M15D vanX D-ala-D-ala dipeptidase
1403	 68.83	0	1501286..1502023	-	245	167645376	-	Caul_1411	-	hypothetical protein
1404	 68.31	0	1502074..1502802	-	242	167645377	-	Caul_1412	-	HhH-GPD family protein
1405	 71.90	+1	1502908..1503480	-	190	167645378	-	Caul_1413	-	NUDIX hydrolase
1406	 65.56	0	1503477..1504466	-	329	167645379	-	Caul_1414	-	phosphate transporter
1407	 65.74	0	1504478..1505122	-	214	167645380	-	Caul_1415	-	hypothetical protein
1408	 68.82	0	1505321..1505785	+	154	167645381	-	Caul_1416	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
1409	 70.51	0	1505788..1507971	+	727	167645382	-	Caul_1417	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
1410	 69.55	0	1508190..1509542	+	450	167645383	-	Caul_1418	-	FAD dependent oxidoreductase
1411	 68.45	0	1509539..1509706	-	55	167645384	-	Caul_1419	-	hypothetical protein
1412	 63.96	0	1509880..1511283	+	467	167645385	-	Caul_1420	-	major facilitator transporter
1413	 63.31	-1	1511511..1512047	+	178	167645386	-	Caul_1421	-	hemerythrin HHE cation binding region protein
1414	 68.02	0	1512095..1512610	+	171	167645387	-	Caul_1422	-	CinA domain-containing protein
1415	 65.12	0	1512678..1512935	-	85	167645388	-	Caul_1423	-	transglycosylase-associated protein
1416	 68.33	0	1513085..1513204	-	39	167645389	-	Caul_1424	-	hypothetical protein
1417	 69.20	0	1513375..1514715	-	446	167645390	-	Caul_1425	-	NHL repeat-containing protein
1418	 69.69	0	1515083..1515844	-	253	167645391	-	Caul_1426	-	GntR domain-containing protein
1419	 65.59	0	1515994..1517205	+	403	167645392	-	Caul_1427	-	mandelate racemase/muconate lactonizing protein
1420	 69.20	0	1517283..1517795	-	170	167645393	-	Caul_1428	-	hypothetical protein
1421	 67.22	0	1517903..1518619	-	238	167645394	-	Caul_1429	-	flagellar basal body L-ring protein
1422	 71.10	0	1518634..1519377	-	247	167645395	-	Caul_1430	-	flagellar basal body P-ring formation protein FlgA
1423	 65.15	0	1519382..1520170	-	262	167645396	-	Caul_1431	-	flagellar basal body rod protein FlgG
1424	 65.18	0	1520184..1520921	-	245	167645397	-	Caul_1432	-	flagellar basal body rod protein
1425	 65.85	0	1521146..1521757	+	203	167645398	-	Caul_1433	-	flagellar basal body-associated protein FliL
1426	 65.70	0	1521788..1522921	+	377	167645399	-	Caul_1434	-	flagellar motor switch protein FliM
1427	 73.74	+1	1522918..1523511	+	197	167645400	-	Caul_1435	-	hypothetical protein
1428	 72.20	+1	1523508..1524284	+	258	167645401	-	Caul_1436	-	hypothetical protein
1429	 71.67	+1	1524307..1527186	+	959	167645402	-	Caul_1437	-	tetratricopeptide TPR_4
1430	 66.94	0	1527442..1528905	+	487	167645403	-	Caul_1438	-	glucose-6-phosphate 1-dehydrogenase
1431	 69.63	0	1528917..1529624	+	235	167645404	-	Caul_1439	-	6-phosphogluconolactonase
1432	 68.42	0	1529629..1531455	+	608	167645405	-	Caul_1440	-	phosphogluconate dehydratase
1433	 68.38	0	1531469..1532458	+	329	167645406	-	Caul_1441	-	glucokinase
1434	 67.35	0	1532719..1533744	+	341	167645407	-	Caul_1442	-	LacI family transcription regulator
1435	 71.42	0	1533967..1535397	+	476	167645408	-	Caul_1443	-	pyruvate kinase
1436	 69.54	0	1535552..1536247	-	231	167645409	-	Caul_1444	-	Crp/FNR family transcriptional regulator
1437	 70.63	0	1536696..1537829	-	377	167645410	-	Caul_1445	-	acyl-CoA dehydrogenase domain-containing protein
1438	 68.14	0	1537831..1538442	-	203	167645411	-	Caul_1446	-	DSBA oxidoreductase
1439	 66.83	0	1538461..1539666	-	401	167645412	-	Caul_1447	-	acyl-CoA dehydrogenase domain-containing protein
1440	 69.71	0	1539870..1541543	+	557	167645413	-	Caul_1448	-	hypothetical protein
1441	 66.20	0	1541503..1541715	-	70	167645414	-	Caul_1449	-	hypothetical protein
1442	 70.74	0	1541929..1544922	+	997	167645415	-	Caul_1450	-	peptidoglycan binding domain-containing protein
1443	 66.46	0	1545086..1545565	+	159	167645416	-	Caul_1451	-	hypothetical protein
1444	 69.14	0	1545580..1546065	-	161	167645417	-	Caul_1452	-	hypothetical protein
1445	 71.71	+1	1546148..1546861	-	237	167645418	-	Caul_1453	-	hypothetical protein
1446	 69.49	0	1546875..1549349	-	824	167645419	-	Caul_1454	-	DEAD/DEAH box helicase domain-containing protein
1447	 72.14	+1	1549465..1550232	-	255	167645420	-	Caul_1455	-	hypothetical protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.