IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1222	 66.67	0	1292253..1292930	+	225	167645195	-	Caul_1230	-	periplasmic protein-like protein
1223	 67.65	0	1293097..1294311	+	404	167645196	-	Caul_1231	-	acetylornithine and succinylornithine aminotransferase
1224	 69.12	0	1294433..1295368	+	311	167645197	-	Caul_1232	-	ornithine carbamoyltransferase
1225	 58.75	-2	1295381..1295620	+	79	167645198	-	Caul_1233	-	hypothetical protein
1226	 70.15	0	1295796..1296713	+	305	167645199	-	Caul_1234	-	Hsp33-like chaperonin
1227	 70.29	0	1296839..1297777	-	312	167645200	-	Caul_1235	-	rhodanese domain-containing protein
1228	 68.08	0	1298157..1298582	-	141	167645201	-	Caul_1236	-	Fe-S metabolism associated SufE
1229	 69.10	0	1298622..1299485	-	287	167645202	-	Caul_1237	-	histidine kinase
1230	 72.41	+1	1299695..1301434	+	579	167645203	-	Caul_1238	-	multi-sensor signal transduction histidine kinase
1231	 73.03	+1	1301474..1302337	-	287	167645204	-	Caul_1239	-	hypothetical protein
1232	 70.47	0	1302437..1302778	+	113	167645205	-	Caul_1240	-	hypothetical protein
1233	 71.47	0	1302938..1304833	-	631	167645206	-	Caul_1241	-	signal transduction histidine kinase
1234	 71.39	0	1305014..1305754	-	246	167645207	-	Caul_1242	-	hypothetical protein
1235	 65.35	0	1305957..1306337	+	126	167645208	-	Caul_1243	-	hypothetical protein
1236	 64.63	0	1306378..1306524	-	48	167645209	-	Caul_1244	-	hypothetical protein
1237	 67.42	0	1306754..1308355	+	533	167645210	-	Caul_1245	-	peptide chain release factor 3
1238	 76.15	+2	1308490..1309680	+	396	167645211	-	Caul_1246	-	hypothetical protein
1239	 69.12	0	1309677..1310246	+	189	167645212	-	Caul_1247	-	hypothetical protein
1240	 71.13	0	1310321..1310701	+	126	167645213	-	Caul_1248	-	methylglyoxal synthase
1241	 69.08	0	1310714..1311460	-	248	167645214	-	Caul_1249	-	hypothetical protein
1242	 70.16	0	1311478..1312593	-	371	167645215	-	Caul_1250	-	hypothetical protein
1243	 73.46	+1	1312711..1313181	-	156	167645216	-	Caul_1251	-	hypothetical protein
1244	 69.61	0	1313203..1313745	+	180	167645217	-	Caul_1252	-	hypothetical protein
1245	 73.86	+1	1314109..1315485	+	458	167645218	-	Caul_1253	-	hypothetical protein
1246	 67.33	0	1315547..1315849	+	100	167645219	-	Caul_1254	-	hypothetical protein
1247	 73.85	+1	1315856..1316398	-	180	167645220	-	Caul_1255	-	hypothetical protein
1248	 61.59	-1	1316687..1316824	-	45	167645221	-	Caul_1256	-	hypothetical protein
1249	 55.56	-2	1316827..1317186	-	119	167645222	-	Caul_1257	-	hypothetical protein
1250	 70.51	0	1317266..1318357	-	363	167645223	-	Caul_1258	-	hypothetical protein
1251	 76.33	+2	1318354..1319088	-	244	167645224	-	Caul_1259	-	hypothetical protein
1252	 73.78	+1	1319182..1319940	-	252	167645225	-	Caul_1260	-	binding-protein-dependent transport systems inner membrane component
1253	 74.94	+1	1319981..1320754	-	257	167645226	-	Caul_1261	-	ABC transporter related
1254	 66.16	0	1320885..1321865	-	326	167645227	-	Caul_1262	-	NMT1/THI5-like domain-containing protein
1255	 70.01	0	1322085..1324148	-	687	167645228	-	Caul_1263	-	integral membrane sensor hybrid histidine kinase
1256	 71.13	0	1324258..1325535	-	425	167645229	-	Caul_1264	-	sodium/hydrogen exchanger
1257	 64.42	0	1325630..1326118	+	162	167645230	-	Caul_1265	-	hypothetical protein
1258	 67.31	0	1326288..1326599	-	103	167645231	-	Caul_1266	-	hypothetical protein
1259	 71.83	+1	1326725..1326937	+	70	167645232	-	Caul_1267	-	hypothetical protein
1260	 72.29	+1	1326969..1327982	+	337	167645233	-	Caul_1268	-	mandelate racemase/muconate lactonizing protein
1261	 73.88	+1	1328096..1329052	-	318	167645234	-	Caul_1269	-	HxlR family transcriptional regulator
1262	 71.25	0	1329189..1330409	+	406	167645235	-	Caul_1270	-	acetyl-CoA acetyltransferase
1263	 70.47	0	1330590..1331378	+	262	167645236	-	Caul_1271	-	hypothetical protein
1264	 67.83	0	1331495..1332958	-	487	167645237	-	Caul_1272	-	carotenoid oxygenase
1265	 73.17	+1	1333128..1335125	+	665	167645238	-	Caul_1273	-	TonB-dependent receptor
1266	 70.89	0	1335247..1336359	-	370	167645239	-	Caul_1274	-	ErfK/YbiS/YcfS/YnhG family protein
1267	 72.12	+1	1336453..1337607	+	384	167645240	-	Caul_1275	-	peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
1268	 74.69	+1	1337501..1340017	-	838	167645241	-	Caul_1276	-	hypothetical protein
1269	 73.33	+1	1340017..1340721	-	234	167645242	-	Caul_1277	-	ABC transporter related
1270	 73.07	+1	1340779..1341450	+	223	167645243	-	Caul_1278	-	GDSL family lipase
1271	 69.19	0	1341443..1342552	-	369	167645244	-	Caul_1279	-	hypothetical protein
1272	 68.69	0	1342688..1345801	-	1037	167645245	-	Caul_1280	-	acriflavin resistance protein
1273	 72.78	+1	1345811..1346971	-	386	167645246	-	Caul_1281	-	RND family efflux transporter MFP subunit
1274	 68.93	0	1347156..1348214	-	352	167645247	-	Caul_1282	-	aldo/keto reductase
1275	 67.17	0	1348404..1349402	-	332	167645248	-	Caul_1283	-	glycoside hydrolase family protein
1276	 66.06	0	1349487..1350311	-	274	167645249	-	Caul_1284	-	GntR domain-containing protein
1277	 64.75	0	1350392..1351960	-	522	167645250	-	Caul_1285	-	SSS family solute/sodium (Na+) symporter
1278	 70.00	0	1352009..1352638	-	209	167645251	-	Caul_1286	-	2-dehydro-3-deoxy-6-phosphogalactonate aldolase
1279	 69.72	0	1352631..1353581	-	316	167645252	-	Caul_1287	-	2-dehydro-3-deoxygalactonokinase
1280	 68.85	0	1353581..1355317	-	578	167645253	-	Caul_1288	-	dihydroxy-acid dehydratase
1281	 64.45	0	1355602..1358538	+	978	167645254	-	Caul_1289	-	TonB-dependent receptor
1282	 67.72	0	1358678..1360189	+	503	167645255	-	Caul_1290	-	tryptophan halogenase
1283	 65.83	0	1360330..1361994	+	554	167645256	-	Caul_1291	-	glycoside hydrolase family protein
1284	 65.33	0	1362094..1364928	+	944	167645257	-	Caul_1292	-	glycoside hydrolase family protein
1285	 69.52	0	1365093..1365758	-	221	167645258	-	Caul_1293	-	peptidase M23B
1286	 70.94	0	1365891..1366475	-	194	167645259	-	Caul_1294	-	hypothetical protein
1287	 69.67	0	1366640..1368304	-	554	167645260	-	Caul_1295	-	urocanate hydratase
1288	 69.50	0	1368429..1369241	-	270	167645261	-	Caul_1296	-	N-formylglutamate amidohydrolase
1289	 71.16	0	1369372..1370907	-	511	167645262	-	Caul_1297	-	histidine ammonia-lyase
1290	 71.31	0	1370908..1372113	-	401	167645263	-	Caul_1298	-	imidazolonepropionase
1291	 71.75	+1	1372200..1373675	+	491	167645264	-	Caul_1299	-	N-formimino-L-glutamate deiminase
1292	 71.99	+1	1373672..1374385	+	237	167645265	-	Caul_1300	-	histidine utilization repressor
1293	 67.19	0	1374389..1374580	-	63	167645266	-	Caul_1301	-	hypothetical protein
1294	 67.16	0	1374661..1376283	-	540	167645267	-	Caul_1302	-	glycoside hydrolase family alpha-L-fucosidase
1295	 68.72	0	1376672..1379152	+	826	167645268	-	Caul_1303	-	glycoside hydrolase family 3 protein
1296	 72.00	+1	1379308..1381239	+	643	167645269	-	Caul_1304	-	protein of unknown function DUF303 acetylesterase putative
1297	 66.13	0	1381338..1381523	+	61	167645270	-	Caul_1305	-	hypothetical protein
1298	 67.11	0	1381504..1381953	-	149	167645271	-	Caul_1306	-	MarR family transcriptional regulator
1299	 67.63	0	1381950..1382366	-	138	167645272	-	Caul_1307	-	OsmC family protein
1300	 67.51	0	1382516..1382992	-	158	167645273	-	Caul_1308	-	hypothetical protein
1301	 76.92	+2	1383232..1383933	-	233	167645274	-	Caul_1309	-	heat shock protein DnaJ domain-containing protein
1302	 69.30	0	1383994..1384335	-	113	167645275	-	Caul_1310	-	hypothetical protein
1303	 70.66	0	1384428..1385129	+	233	167645276	-	Caul_1311	-	pyridoxamine 5'-phosphate oxidase
1304	 70.21	0	1385130..1385750	-	206	167645277	-	Caul_1312	-	TetR family transcriptional regulator
1305	 71.07	0	1385893..1387392	+	499	167645278	-	Caul_1313	-	hypothetical protein
1306	 70.44	0	1387518..1389239	-	573	167645279	-	Caul_1314	-	integral membrane sensor hybrid histidine kinase
1307	 70.19	0	1389485..1392382	+	965	167645280	-	Caul_1315	-	AMP-dependent synthetase and ligase
1308	 69.69	0	1392394..1393287	-	297	167645281	-	Caul_1316	-	beta-lactamase domain-containing protein
1309	 66.67	0	1393365..1393517	+	50	167645282	-	Caul_1317	-	hypothetical protein
1310	 71.53	0	1393530..1393940	-	136	167645283	-	Caul_1318	-	hypothetical protein
1311	 64.29	0	1394550..1397750	+	1066	167645284	-	Caul_1319	-	TonB-dependent receptor plug
1312	 69.13	0	1398729..1400516	-	595	167645285	-	Caul_1320	-	signal peptide peptidase SppA, 67K type
1313	 62.87	-1	1401072..1402838	+	588	167645286	-	Caul_1321	-	hypothetical protein
1314	 61.42	-1	1403329..1404987	+	552	167645287	-	Caul_1322	-	hypothetical protein
1315	 62.11	-1	1405052..1406281	+	409	167645288	-	Caul_1323	-	hypothetical protein
1316	 64.34	0	1407135..1407392	-	85	167645289	-	Caul_1324	-	helix-turn-helix domain-containing protein
1317	 62.92	-1	1407559..1408038	+	159	167645290	-	Caul_1325	-	hypothetical protein
1318	 64.09	0	1408088..1408630	-	180	167645291	-	Caul_1326	-	resolvase domain-containing protein
1319	 59.35	-2	1409326..1409940	-	204	167645292	-	Caul_1327	-	TetR family transcriptional regulator
1320	 69.91	0	1409957..1410727	-	256	167645293	-	Caul_1328	-	ABC transporter related
1321	 71.71	+1	1410724..1411536	-	270	167645294	-	Caul_1329	-	hypothetical protein
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.