IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
71	 70.18	0	85099..85752	-	217	167644044	-	Caul_0071	-	maleylacetoacetate isomerase
72	 69.62	0	85752..86429	-	225	167644045	-	Caul_0072	-	fumarylacetoacetate (FAA) hydrolase
73	 66.33	0	86658..87536	+	292	167644046	-	Caul_0073	-	ABC transporter related
74	 65.82	0	87536..91186	+	1216	167644047	-	Caul_0074	-	hypothetical protein
75	 67.77	0	91183..91635	+	150	167644048	-	Caul_0075	-	thioesterase superfamily protein
76	 66.83	0	91725..92324	-	199	167644049	-	Caul_0076	-	hypothetical protein
77	 68.92	0	92446..93642	+	398	167644050	-	Caul_0077	-	L-carnitine dehydratase/bile acid-inducible protein F
78	 68.33	0	93642..94061	+	139	167644051	-	Caul_0078	-	glutathione-dependent formaldehyde-activating GFA
79	 71.88	+1	94113..96032	-	639	167644052	-	Caul_0079	-	signal transduction histidine kinase
80	 69.77	0	96222..96608	+	128	167644053	-	Caul_0080	-	hypothetical protein
81	 74.49	+1	96605..97000	+	131	167644054	-	Caul_0081	-	hypothetical protein
82	 65.86	0	97093..97710	+	205	167644055	-	Caul_0082	-	superoxide dismutase
83	 69.22	0	97734..98594	-	286	167644056	-	Caul_0083	-	metallophosphoesterase
84	 71.63	0	98591..99457	-	288	167644057	-	Caul_0084	-	diacylglycerol kinase catalytic region
85	 69.59	0	99577..99918	+	113	167644058	-	Caul_0085	-	17 kDa surface antigen
86	 67.94	0	100001..100471	+	156	167644059	-	Caul_0086	-	OmpA/MotB domain-containing protein
87	 64.32	0	100797..101009	+	70	167644060	-	Caul_0087	-	hypothetical protein
88	 67.86	0	101020..101271	+	83	167644061	-	Caul_0088	-	hypothetical protein
89	 68.41	0	101360..102160	-	266	167644062	-	Caul_0089	-	two-component response regulator
90	 61.29	-1	102405..102590	+	61	167644063	-	Caul_0090	-	hypothetical protein
91	 68.15	0	102593..103198	+	201	167644064	-	Caul_0091	-	ECF subfamily RNA polymerase sigma-24 factor
92	 71.45	0	103195..104907	+	570	167644065	-	Caul_0092	-	signal transduction histidine kinase
93	 70.37	0	104974..105108	+	44	167644066	-	Caul_0093	-	entericidin EcnAB
94	 69.30	0	105378..106439	+	353	167644067	-	Caul_0094	-	hypothetical protein
95	 70.17	0	106458..107285	-	275	167644068	-	Caul_0095	-	MCP methyltransferase, CheR-type
96	 67.49	0	107282..107647	-	121	167644069	-	Caul_0096	-	response regulator receiver protein
97	 71.57	0	107735..108427	-	230	167644070	-	Caul_0097	-	hypothetical protein
98	 68.28	0	108507..108692	+	61	167644071	-	Caul_0098	-	hypothetical protein
99	 70.40	0	108693..109469	+	258	167644072	-	Caul_0099	-	3'(2'),5'-bisphosphate nucleotidase
100	 66.03	0	109905..110375	-	156	167644073	-	Caul_0100	-	hypothetical protein
101	 71.97	+1	110491..111810	+	439	167644074	-	Caul_0101	-	3-phosphoshikimate 1-carboxyvinyltransferase
102	 70.35	0	111814..112464	+	216	167644075	-	Caul_0102	-	cytidylate kinase
103	 63.57	-1	112596..114305	+	569	167644076	-	Caul_0103	-	30S ribosomal protein S1
104	 66.67	0	114606..114890	+	94	167644077	-	Caul_0104	-	integration host factor, beta subunit
105	 66.46	0	114987..115472	+	161	167644078	-	Caul_0105	-	large conductance mechanosensitive channel protein
106	 68.13	0	115507..116328	-	273	167644079	-	Caul_0106	-	hypothetical protein
107	 70.37	0	116410..119274	-	954	167644080	-	Caul_0107	-	peptidase M16 domain-containing protein
108	 75.02	+1	119347..120999	-	550	167644081	-	Caul_0108	-	saccharopine dehydrogenase
109	 69.41	0	120996..121433	-	145	167644082	-	Caul_0109	-	putative thiol-disulphide oxidoreductase DCC
110	 72.61	+1	121430..121984	-	184	167644083	-	Caul_0110	-	cyclase/dehydrase
111	 67.65	0	122186..124126	-	646	167644084	-	Caul_0111	-	acetyl-CoA synthetase
112	 67.20	0	124317..125066	+	249	167644085	-	Caul_0112	-	creatininase
113	 66.16	0	125216..125998	-	260	167644086	-	Caul_0113	-	hypothetical protein
114	 72.90	+1	126098..126466	-	122	167644087	-	Caul_0114	-	Rieske (2Fe-2S) domain-containing protein
115	 66.31	0	126550..126831	-	93	167644088	-	Caul_0115	-	YCII-related
116	 72.99	+1	126970..127965	-	331	167644089	-	Caul_0116	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
117	 71.71	+1	127962..129092	-	376	167644090	-	Caul_0117	-	glycoprotease family metalloendopeptidase
118	 72.62	+1	129164..130120	+	318	167644091	-	Caul_0118	-	porphobilinogen deaminase
119	 75.46	+1	130129..130833	+	234	167644092	-	Caul_0119	-	uroporphyrinogen III synthase HEM4
120	 76.33	+2	130877..131818	+	313	167644093	-	Caul_0120	-	hypothetical protein
121	 74.68	+1	131815..133362	+	515	167644094	-	Caul_0121	-	HemY domain-containing protein
122	 69.71	0	133988..134512	+	174	167644095	-	Caul_0122	-	hypothetical protein
123	 65.18	0	134539..136551	+	670	167644096	-	Caul_0123	-	TonB-dependent receptor plug
124	 72.76	+1	136692..137315	-	207	167644097	-	Caul_0124	-	hypothetical protein
125	 67.44	0	137527..139725	-	732	167644098	-	Caul_0125	-	3-hydroxyacyl-CoA dehydrogenase NAD-binding
126	 67.50	0	139853..141058	-	401	167644099	-	Caul_0126	-	acetyl-CoA acetyltransferase
127	 67.20	0	141140..142072	+	310	167644100	-	Caul_0127	-	hypothetical protein
128	 70.93	0	142282..142656	-	124	167644101	-	Caul_0128	-	hypothetical protein
129	 70.77	0	142656..143045	-	129	167644102	-	Caul_0129	-	hypothetical protein
130	 64.35	0	143047..144210	-	387	167644103	-	Caul_0130	-	acyl-CoA dehydrogenase domain-containing protein
131	 66.67	0	144213..146003	-	596	167644104	-	Caul_0131	-	acyl-CoA dehydrogenase domain-containing protein
132	 67.91	0	146094..146576	-	160	167644105	-	Caul_0132	-	MerR family transcriptional regulator
133	 71.36	0	146748..147407	+	219	167644106	-	Caul_0133	-	putative phage repressor
134	 64.29	0	147428..147637	-	69	167644107	-	Caul_0134	-	hypothetical protein
135	 68.07	0	147774..148769	-	331	167644108	-	Caul_0135	-	NAD-dependent epimerase/dehydratase
136	 68.51	0	149019..149993	-	324	167644109	-	Caul_0136	-	UDP-glucose 4-epimerase
137	 66.43	0	150106..151764	-	552	167644110	-	Caul_0137	-	lysyl-tRNA synthetase
138	 50.00	-2	151893..152516	+	207	167644111	-	Caul_0138	-	hypothetical protein
139	 62.84	-1	153547..154671	+	374	167644112	-	Caul_0139	-	hypothetical protein
140	 67.79	0	154759..155292	+	177	167644113	-	Caul_0140	-	Lipocalin family protein
141	 66.89	0	155553..155999	+	148	167644114	-	Caul_0141	-	ECF subfamily RNA polymerase sigma-24 factor
142	 71.57	0	155996..157075	+	359	167644115	-	Caul_0142	-	anti-FecI sigma factor, FecR
143	 67.55	0	157133..159727	+	864	167644116	-	Caul_0143	-	TonB-dependent receptor plug
144	 69.78	0	159878..161485	+	535	167644117	-	Caul_0144	-	Alpha,alpha-trehalase
145	 69.90	0	161590..162456	+	288	167644118	-	Caul_0145	-	dienelactone hydrolase
146	 68.08	0	162632..163552	+	306	167644119	-	Caul_0146	-	alpha/beta hydrolase fold
147	 72.57	+1	163564..164037	+	157	167644120	-	Caul_0147	-	hypothetical protein
148	 68.05	0	164271..165866	+	531	167644121	-	Caul_0148	-	amine oxidase
149	 70.49	0	165940..167196	-	418	167644122	-	Caul_0149	-	ROK family protein
150	 72.95	+1	167331..168269	+	312	167644123	-	Caul_0150	-	ROK family protein
151	 69.93	0	169318..171798	+	826	167644124	-	Caul_0152	-	glycoside hydrolase family 3 protein
152	 70.25	0	171937..172410	+	157	167644125	-	Caul_0153	-	ybaK/ebsC protein
153	 68.51	0	172554..173528	-	324	167644126	-	Caul_0154	-	MarR family transcriptional regulator
154	 71.88	+1	173892..174908	+	338	167644127	-	Caul_0155	-	hypothetical protein
155	 64.01	0	175037..175600	+	187	167644128	-	Caul_0156	-	Ricin B lectin
156	 67.43	0	175652..178144	-	830	167644129	-	Caul_0157	-	DNA gyrase subunit B
157	 71.93	+1	178141..179319	-	392	167644130	-	Caul_0158	-	recombination protein F
158	 68.67	0	179531..180280	-	249	167644131	-	Caul_0159	-	short-chain dehydrogenase/reductase SDR
159	 65.60	0	180360..180734	-	124	167644132	-	Caul_0160	-	hypothetical protein
160	 62.19	-1	181173..181931	-	252	167644133	-	Caul_0161	-	hypothetical protein
161	 66.93	0	182015..183133	-	372	167644134	-	Caul_0162	-	DNA polymerase III subunit beta
162	 65.90	0	183407..183925	-	172	167644135	-	Caul_0163	-	methionine sulfoxide reductase A
163	 76.42	+2	184034..184402	-	122	167644136	-	Caul_0164	-	hypothetical protein
164	 69.58	0	184468..185085	-	205	167644137	-	Caul_0165	-	GrpE protein
165	 68.62	0	185097..186173	-	358	167644138	-	Caul_0166	-	heat-inducible transcription repressor
166	 68.31	0	186297..187025	+	242	167644139	-	Caul_0167	-	ribonuclease PH
167	 65.37	0	187160..187390	-	76	167644140	-	Caul_0168	-	XRE family transcriptional regulator
168	 65.36	0	187411..187944	-	177	167644141	-	Caul_0169	-	hypothetical protein
169	 68.33	0	188022..188201	-	59	167644142	-	Caul_0170	-	hypothetical protein
170	 70.15	0	188284..188886	-	200	167644143	-	Caul_0171	-	glutathione S-transferase domain-containing protein
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.