IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.78   STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1137	 69.05	0	1214808..1215269	+	153	167645110	-	Caul_1145	-	hypothetical protein
1138	 65.79	0	1215269..1215610	+	113	167645111	-	Caul_1146	-	ECF subfamily RNA polymerase sigma-24 factor
1139	 67.88	0	1215603..1216097	+	164	167645112	-	Caul_1147	-	hypothetical protein
1140	 63.05	-1	1216385..1216633	-	82	167645113	-	Caul_1148	-	hypothetical protein
1141	 63.36	-1	1216857..1217219	+	120	167645114	-	Caul_1149	-	XRE family transcriptional regulator
1142	 67.53	0	1217228..1217458	-	76	167645115	-	Caul_1150	-	conjugal transfer TraD family protein
1143	 64.79	0	1217532..1217798	-	88	167645116	-	Caul_1151	-	hypothetical protein
1144	 68.91	0	1217970..1220828	+	952	167645117	-	Caul_1152	-	Ti-type conjugative transfer relaxase TraA
1145	 64.96	0	1220838..1221539	+	233	167645118	-	Caul_1153	-	hypothetical protein
1146	 56.23	-2	1221685..1222278	+	197	167645119	-	Caul_1154	-	hypothetical protein
1147	 58.57	-2	1222275..1223102	+	275	167645120	-	Caul_1155	-	putative transcriptional regulator
1148	 60.18	-1	1223105..1224013	+	302	167645121	-	Caul_1156	-	hypothetical protein
1149	 53.58	-2	1224030..1224350	-	106	167645122	-	Caul_1157	-	XRE family transcriptional regulator
1150	 64.86	0	1224518..1224739	+	73	167645123	-	Caul_1158	-	hypothetical protein
1151	 61.72	-1	1224793..1225701	+	302	167645124	-	Caul_1159	-	hypothetical protein
1152	 44.99	-2	1225841..1226329	+	162	167645125	-	Caul_1160	-	hypothetical protein
1153	 47.37	-2	1226587..1227498	-	303	167645126	-	Caul_1161	-	hypothetical protein
1154	 58.95	-2	1227539..1228108	-	189	167645127	-	Caul_1162	-	adenylate kinase-like protein
1155	 54.37	-2	1228105..1228527	-	140	167645128	-	Caul_1163	-	hypothetical protein
1156	 47.06	-2	1228505..1229560	-	351	167645129	-	Caul_1164	-	hypothetical protein
1157	 69.83	0	1230189..1230536	+	115	167645130	-	Caul_1165	-	hypothetical protein
1158	 69.76	0	1230594..1231370	-	258	167645131	-	Caul_1166	-	hypothetical protein
1159	 67.77	0	1231428..1232879	-	483	167645132	-	Caul_1167	-	major facilitator transporter
1160	 64.74	0	1232987..1233142	-	51	167645133	-	Caul_1168	-	hypothetical protein
1161	 69.42	0	1233262..1233660	-	132	167645134	-	Caul_1169	-	hypothetical protein
1162	 68.15	0	1233959..1234093	-	44	167645135	-	Caul_1170	-	entericidin EcnAB
1163	 68.23	0	1234337..1236442	-	701	167645136	-	Caul_1171	-	glutaryl-7-aminocephalosporanic-acid acylase
1164	 69.48	0	1236560..1236808	-	82	167645137	-	Caul_1172	-	hypothetical protein
1165	 68.74	0	1237150..1237872	+	240	167645138	-	Caul_1173	-	signal transduction histidine kinase
1166	 68.77	0	1238119..1238688	-	189	167645139	-	Caul_1174	-	hypothetical protein
1167	 70.18	0	1238758..1238928	-	56	167645140	-	Caul_1175	-	hypothetical protein
1168	 72.50	+1	1238943..1239851	+	302	167645141	-	Caul_1176	-	hypothetical protein
1169	 69.71	0	1239889..1240512	-	207	167645142	-	Caul_1177	-	glutathione S-transferase domain-containing protein
1170	 59.93	-2	1240587..1240883	+	98	167645143	-	Caul_1178	-	DNA polymerase beta subunit
1171	 60.00	-2	1240864..1241253	+	129	167645144	-	Caul_1179	-	hypothetical protein
1172	 69.62	0	1241264..1242889	-	541	167645145	-	Caul_1180	-	FAD dependent oxidoreductase
1173	 65.73	0	1242913..1244721	-	602	167645146	-	Caul_1181	-	GTP-binding protein LepA
1174	 69.64	0	1244876..1245481	+	201	167645147	-	Caul_1182	-	hypothetical protein
1175	 71.32	0	1246635..1247408	-	257	167645148	-	Caul_1183	-	transglutaminase domain-containing protein
1176	 68.79	0	1247507..1248118	-	203	167645149	-	Caul_1184	-	peptide methionine sulfoxide reductase
1177	 72.55	+1	1248177..1248431	-	84	167645150	-	Caul_1185	-	hypothetical protein
1178	 72.39	+1	1248428..1248724	-	98	167645151	-	Caul_1186	-	hypothetical protein
1179	 63.27	-1	1248851..1248997	-	48	167645152	-	Caul_1187	-	hypothetical protein
1180	 70.81	0	1249261..1251699	-	812	167645153	-	Caul_1188	-	phenylalanyl-tRNA synthetase subunit beta
1181	 60.53	-1	1251731..1251958	-	75	167645154	-	Caul_1189	-	hypothetical protein
1182	 68.60	0	1251958..1253046	-	362	167645155	-	Caul_1190	-	phenylalanyl-tRNA synthetase, alpha subunit
1183	 64.17	0	1253167..1253526	-	119	167645156	-	Caul_1191	-	50S ribosomal protein L20
1184	 58.71	-2	1253540..1253740	-	66	167645157	-	Caul_1192	-	50S ribosomal protein L35
1185	 65.89	0	1253878..1255806	-	642	167645158	-	Caul_1193	-	peptidase S9 prolyl oligopeptidase
1186	 71.06	0	1255864..1257114	-	416	167645159	-	Caul_1194	-	major facilitator transporter
1187	 65.94	0	1257199..1259136	-	645	167645160	-	Caul_1195	-	peptidase S9 prolyl oligopeptidase
1188	 60.54	-1	1259367..1259888	-	173	167645161	-	Caul_1196	-	translation initiation factor IF-3
1189	 71.09	0	1260217..1261188	-	323	167645162	-	Caul_1197	-	glycosyl transferase family protein
1190	 70.87	0	1261185..1262351	-	388	167645163	-	Caul_1198	-	glycosyl transferase group 1
1191	 69.99	0	1262408..1263280	+	290	167645164	-	Caul_1199	-	alpha/beta hydrolase fold
1192	 71.64	+1	1263581..1264465	-	294	167645165	-	Caul_1200	-	NAD-dependent epimerase/dehydratase
1193	 68.98	0	1264970..1265575	+	201	167645166	-	Caul_1201	-	hypothetical protein
1194	 70.54	0	1265652..1267406	+	584	167645167	-	Caul_1202	-	hypothetical protein
1195	 65.89	0	1267599..1267985	+	128	167645168	-	Caul_1203	-	hypothetical protein
1196	 75.63	+2	1267982..1268695	+	237	167645169	-	Caul_1204	-	hypothetical protein
1197	 63.58	-1	1268783..1269235	-	150	167645170	-	Caul_1205	-	hypothetical protein
1198	 73.87	+1	1269300..1269632	-	110	167645171	-	Caul_1206	-	hypothetical protein
1199	 65.60	0	1269773..1271269	-	498	167645172	-	Caul_1207	-	phosphoglucomutase/phosphomannomutase alpha/beta/subunit
1200	 71.09	0	1271369..1272340	-	323	167645173	-	Caul_1208	-	KpsF/GutQ family protein
1201	 72.15	+1	1272337..1272573	-	78	167645174	-	Caul_1209	-	hypothetical protein
1202	 68.91	0	1272719..1273432	+	237	167645175	-	Caul_1210	-	phosphoglycerate mutase 1 family protein
1203	 69.76	0	1273555..1274814	+	419	167645176	-	Caul_1211	-	pentapeptide repeat-containing protein
1204	 70.39	0	1274932..1276194	+	420	167645177	-	Caul_1212	-	pentapeptide repeat-containing protein
1205	 64.66	0	1276282..1277379	+	365	167645178	-	Caul_1213	-	hypothetical protein
1206	 66.24	0	1277491..1277958	-	155	167645179	-	Caul_1214	-	heat shock protein Hsp20
1207	 69.40	0	1278195..1279037	+	280	167645180	-	Caul_1215	-	hypothetical protein
1208	 71.16	0	1279145..1280011	+	288	167645181	-	Caul_1216	-	hypothetical protein
1209	 68.60	0	1280034..1280705	+	223	167645182	-	Caul_1217	-	hypothetical protein
1210	 63.11	-1	1280797..1281105	+	102	167645183	-	Caul_1218	-	sterol-binding domain-containing protein
1211	 69.89	0	1281109..1282071	+	320	167645184	-	Caul_1219	-	alpha/beta hydrolase fold
1212	 71.33	0	1282121..1282957	-	278	167645185	-	Caul_1220	-	histidinol-phosphate phosphatase
1213	 66.15	0	1283015..1283398	-	127	167645186	-	Caul_1221	-	XRE family transcriptional regulator
1214	 69.26	0	1283540..1284466	+	308	167645187	-	Caul_1222	-	lipid A biosynthesis acyltransferase
1215	 66.47	0	1284527..1285030	-	167	167645188	-	Caul_1223	-	response regulator receiver protein
1216	 73.10	+1	1285132..1285830	-	232	167645189	-	Caul_1224	-	peptidase M23B
1217	 67.57	0	1285971..1286192	-	73	167645190	-	Caul_1225	-	hypothetical protein
1218	 72.09	+1	1286273..1287859	-	528	167645191	-	Caul_1226	-	exodeoxyribonuclease VII, large subunit
1219	 65.85	0	1289264..1289629	+	121	167645192	-	Caul_1227	-	hypothetical protein
1220	 71.87	+1	1290343..1290861	-	172	167645193	-	Caul_1228	-	GcrA cell cycle regulator
1221	 67.03	0	1291109..1291930	+	273	167645194	-	Caul_1229	-	ABC-2 type transporter
1222	 66.67	0	1292253..1292930	+	225	167645195	-	Caul_1230	-	periplasmic protein-like protein
1223	 67.65	0	1293097..1294311	+	404	167645196	-	Caul_1231	-	acetylornithine and succinylornithine aminotransferase
1224	 69.12	0	1294433..1295368	+	311	167645197	-	Caul_1232	-	ornithine carbamoyltransferase
1225	 58.75	-2	1295381..1295620	+	79	167645198	-	Caul_1233	-	hypothetical protein
1226	 70.15	0	1295796..1296713	+	305	167645199	-	Caul_1234	-	Hsp33-like chaperonin
1227	 70.29	0	1296839..1297777	-	312	167645200	-	Caul_1235	-	rhodanese domain-containing protein
1228	 68.08	0	1298157..1298582	-	141	167645201	-	Caul_1236	-	Fe-S metabolism associated SufE
1229	 69.10	0	1298622..1299485	-	287	167645202	-	Caul_1237	-	histidine kinase
1230	 72.41	+1	1299695..1301434	+	579	167645203	-	Caul_1238	-	multi-sensor signal transduction histidine kinase
1231	 73.03	+1	1301474..1302337	-	287	167645204	-	Caul_1239	-	hypothetical protein
1232	 70.47	0	1302437..1302778	+	113	167645205	-	Caul_1240	-	hypothetical protein
1233	 71.47	0	1302938..1304833	-	631	167645206	-	Caul_1241	-	signal transduction histidine kinase
1234	 71.39	0	1305014..1305754	-	246	167645207	-	Caul_1242	-	hypothetical protein
1235	 65.35	0	1305957..1306337	+	126	167645208	-	Caul_1243	-	hypothetical protein
1236	 64.63	0	1306378..1306524	-	48	167645209	-	Caul_1244	-	hypothetical protein
67.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.