IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1071	 71.80	+1	1140444..1141982	-	512	167645044	-	Caul_1079	-	CBS sensor hybrid histidine kinase
1072	 63.29	-1	1142135..1144948	-	937	167645045	-	Caul_1080	-	TonB-dependent receptor
1073	 71.18	0	1145428..1146180	+	250	167645046	-	Caul_1081	-	exsB protein
1074	 67.77	0	1146334..1146966	+	210	167645047	-	Caul_1082	-	hypothetical protein
1075	 69.40	0	1147040..1147405	+	121	167645048	-	Caul_1083	-	queuosine biosynthesis protein QueD
1076	 70.18	0	1147451..1148389	-	312	167645049	-	Caul_1084	-	transposase IS116/IS110/IS902 family protein
1077	 72.09	+1	1148689..1149057	-	122	167645050	-	Caul_1085	-	hypothetical protein
1078	 72.05	+1	1149488..1150936	-	482	167645051	-	Caul_1086	-	RND efflux system outer membrane lipoprotein
1079	 66.57	0	1150936..1154115	-	1059	167645052	-	Caul_1087	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
1080	 69.89	0	1154329..1155507	-	392	167645053	-	Caul_1088	-	RND family efflux transporter MFP subunit
1081	 67.29	0	1155923..1156561	+	212	167645054	-	Caul_1089	-	TetR family transcriptional regulator
1082	 73.68	+1	1157077..1157304	+	75	167645055	-	Caul_1090	-	hypothetical protein
1083	 67.49	0	1157362..1158330	-	322	167645056	-	Caul_1091	-	magnesium and cobalt transport protein CorA
1084	 66.37	0	1158495..1160171	+	558	167645057	-	Caul_1092	-	major facilitator transporter
1085	 71.01	0	1160276..1160782	-	168	167645058	-	Caul_1093	-	hypothetical protein
1086	 70.67	0	1161119..1162243	+	374	167645059	-	Caul_1094	-	AraC family transcriptional regulator
1087	 72.22	+1	1162246..1162749	-	167	167645060	-	Caul_1095	-	GCN5-related N-acetyltransferase
1088	 68.04	0	1162866..1163156	+	96	167645061	-	Caul_1096	-	hypothetical protein
1089	 65.20	0	1163280..1163825	-	181	167645062	-	Caul_1097	-	tail collar domain-containing protein
1090	 64.67	0	1163858..1164409	-	183	167645063	-	Caul_1098	-	tail collar domain-containing protein
1091	 65.19	0	1164447..1164986	-	179	167645064	-	Caul_1099	-	tail collar domain-containing protein
1092	 68.20	0	1165427..1172464	+	2345	167645065	-	Caul_1100	-	hemolysin-type calcium-binding region
1093	 56.17	-2	1172520..1172681	-	53	167645066	-	Caul_1101	-	putative transposase
1094	 68.22	0	1172915..1173301	+	128	167645067	-	Caul_1102	-	putative transposase
1095	 63.92	-1	1173343..1173597	+	84	167645068	-	Caul_1103	-	ISCc1, transposase OrfB
1096	 66.67	0	1173625..1173939	+	104	167645069	-	Caul_1104	-	transposase IS3/IS911 family protein
1097	 67.94	0	1173936..1174796	+	286	167645070	-	Caul_1105	-	integrase catalytic region
1098	 65.88	0	1175065..1175445	+	126	167645071	-	Caul_1106	-	putative transposase of insertion sequence ISRm2011-2, orfA protein
1099	 63.10	-1	1175507..1176010	+	167	167645072	-	Caul_1107	-	transposase and inactivated derivatives-like protein
1100	 60.21	-1	1176040..1176426	-	128	167645073	-	Caul_1108	-	transposase IS4 family protein
1101	 63.14	-1	1176423..1176791	-	122	167645074	-	Caul_1109	-	transposase and inactivated derivative
1102	 65.79	0	1176846..1177757	-	303	167645075	-	Caul_1110	-	formyltetrahydrofolate deformylase
1103	 69.05	0	1178007..1180271	-	754	167645076	-	Caul_1111	-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
1104	 69.44	0	1180434..1180613	+	59	167645077	-	Caul_1112	-	hypothetical protein
1105	 69.58	0	1180613..1181230	+	205	167645078	-	Caul_1113	-	hypothetical protein
1106	 67.10	0	1181245..1181706	+	153	167645079	-	Caul_1114	-	hypothetical protein
1107	 65.55	0	1181817..1182263	+	148	167645080	-	Caul_1115	-	activator of Hsp90 ATPase 1 family protein
1108	 67.23	0	1182250..1182603	+	117	167645081	-	Caul_1116	-	ArsR family transcriptional regulator
1109	 67.54	0	1182732..1183421	-	229	167645082	-	Caul_1117	-	glyoxalase/bleomycin resistance protein/dioxygenase
1110	 68.85	0	1183541..1184683	+	380	167645083	-	Caul_1118	-	alpha/beta hydrolase fold
1111	 68.75	0	1184735..1186657	-	640	167645084	-	Caul_1119	-	peptidase M61 domain-containing protein
1112	 66.07	0	1186824..1189652	-	942	167645085	-	Caul_1120	-	TonB-dependent receptor
1113	 68.23	0	1189947..1190969	+	340	167645086	-	Caul_1121	-	peptidase S51 dipeptidase E
1114	 69.52	0	1191009..1192025	+	338	167645087	-	Caul_1122	-	peptidase T2 asparaginase 2
1115	 65.10	0	1192058..1192504	+	148	167645088	-	Caul_1123	-	AsnC family transcriptional regulator
1116	 60.21	-1	1192518..1192904	-	128	167645089	-	Caul_1124	-	transposase IS4 family protein
1117	 64.12	0	1192901..1193254	-	117	167645090	-	Caul_1125	-	transposase and inactivated derivative
1118	 71.43	0	1193469..1193804	+	111	167645091	-	Caul_1126	-	AsnC family transcriptional regulator
1119	 70.58	0	1193902..1194924	+	340	167645092	-	Caul_1127	-	hypothetical protein
1120	 70.72	0	1194924..1195958	+	344	167645093	-	Caul_1128	-	mandelate racemase/muconate lactonizing protein
1121	 64.69	0	1195930..1196436	-	168	167645094	-	Caul_1129	-	AsnC family transcriptional regulator
1122	 69.53	0	1196651..1198150	+	499	167645095	-	Caul_1130	-	N-acyl-D-glutamate deacylase
1123	 73.06	+1	1198246..1199481	-	411	167645096	-	Caul_1131	-	putative 3-hydroxyphenylpropionic transporter MhpT
1124	 66.31	0	1199590..1200420	-	276	167645097	-	Caul_1132	-	p-hydroxycinnamoyl CoA hydratase/lyase
1125	 70.57	0	1200440..1201900	-	486	167645098	-	Caul_1133	-	aldehyde dehydrogenase
1126	 67.74	0	1202058..1202522	+	154	167645099	-	Caul_1134	-	MarR family transcriptional regulator
1127	 70.46	0	1202642..1204195	+	517	167645100	-	Caul_1135	-	AMP-dependent synthetase and ligase
1128	 67.23	0	1204250..1206547	-	765	167645101	-	Caul_1136	-	TonB-dependent receptor
1129	 65.05	0	1206797..1207849	+	350	167645102	-	Caul_1137	-	vanillate monooxygenase
1130	 71.33	0	1207853..1208581	+	242	167645103	-	Caul_1138	-	GntR family transcriptional regulator
1131	 70.25	0	1208594..1209598	+	334	167645104	-	Caul_1139	-	oxidoreductase FAD/NAD(P)-binding subunit
1132	 64.66	0	1209623..1210021	-	132	167645105	-	Caul_1140	-	putative PAS/PAC sensor protein
1133	 67.40	0	1210257..1211762	+	501	167645106	-	Caul_1141	-	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
1134	 62.92	-1	1212375..1213574	+	399	167645107	-	Caul_1142	-	integrase family protein
1135	 57.97	-2	1213612..1213818	-	68	167645108	-	Caul_1143	-	phage transcriptional regulator, AlpA
1136	 63.58	-1	1214293..1214811	+	172	167645109	-	Caul_1144	-	hypothetical protein
1137	 69.05	0	1214808..1215269	+	153	167645110	-	Caul_1145	-	hypothetical protein
1138	 65.79	0	1215269..1215610	+	113	167645111	-	Caul_1146	-	ECF subfamily RNA polymerase sigma-24 factor
1139	 67.88	0	1215603..1216097	+	164	167645112	-	Caul_1147	-	hypothetical protein
1140	 63.05	-1	1216385..1216633	-	82	167645113	-	Caul_1148	-	hypothetical protein
1141	 63.36	-1	1216857..1217219	+	120	167645114	-	Caul_1149	-	XRE family transcriptional regulator
1142	 67.53	0	1217228..1217458	-	76	167645115	-	Caul_1150	-	conjugal transfer TraD family protein
1143	 64.79	0	1217532..1217798	-	88	167645116	-	Caul_1151	-	hypothetical protein
1144	 68.91	0	1217970..1220828	+	952	167645117	-	Caul_1152	-	Ti-type conjugative transfer relaxase TraA
1145	 64.96	0	1220838..1221539	+	233	167645118	-	Caul_1153	-	hypothetical protein
1146	 56.23	-2	1221685..1222278	+	197	167645119	-	Caul_1154	-	hypothetical protein
1147	 58.57	-2	1222275..1223102	+	275	167645120	-	Caul_1155	-	putative transcriptional regulator
1148	 60.18	-1	1223105..1224013	+	302	167645121	-	Caul_1156	-	hypothetical protein
1149	 53.58	-2	1224030..1224350	-	106	167645122	-	Caul_1157	-	XRE family transcriptional regulator
1150	 64.86	0	1224518..1224739	+	73	167645123	-	Caul_1158	-	hypothetical protein
1151	 61.72	-1	1224793..1225701	+	302	167645124	-	Caul_1159	-	hypothetical protein
1152	 44.99	-2	1225841..1226329	+	162	167645125	-	Caul_1160	-	hypothetical protein
1153	 47.37	-2	1226587..1227498	-	303	167645126	-	Caul_1161	-	hypothetical protein
1154	 58.95	-2	1227539..1228108	-	189	167645127	-	Caul_1162	-	adenylate kinase-like protein
1155	 54.37	-2	1228105..1228527	-	140	167645128	-	Caul_1163	-	hypothetical protein
1156	 47.06	-2	1228505..1229560	-	351	167645129	-	Caul_1164	-	hypothetical protein
1157	 69.83	0	1230189..1230536	+	115	167645130	-	Caul_1165	-	hypothetical protein
1158	 69.76	0	1230594..1231370	-	258	167645131	-	Caul_1166	-	hypothetical protein
1159	 67.77	0	1231428..1232879	-	483	167645132	-	Caul_1167	-	major facilitator transporter
1160	 64.74	0	1232987..1233142	-	51	167645133	-	Caul_1168	-	hypothetical protein
1161	 69.42	0	1233262..1233660	-	132	167645134	-	Caul_1169	-	hypothetical protein
1162	 68.15	0	1233959..1234093	-	44	167645135	-	Caul_1170	-	entericidin EcnAB
1163	 68.23	0	1234337..1236442	-	701	167645136	-	Caul_1171	-	glutaryl-7-aminocephalosporanic-acid acylase
1164	 69.48	0	1236560..1236808	-	82	167645137	-	Caul_1172	-	hypothetical protein
1165	 68.74	0	1237150..1237872	+	240	167645138	-	Caul_1173	-	signal transduction histidine kinase
1166	 68.77	0	1238119..1238688	-	189	167645139	-	Caul_1174	-	hypothetical protein
1167	 70.18	0	1238758..1238928	-	56	167645140	-	Caul_1175	-	hypothetical protein
1168	 72.50	+1	1238943..1239851	+	302	167645141	-	Caul_1176	-	hypothetical protein
1169	 69.71	0	1239889..1240512	-	207	167645142	-	Caul_1177	-	glutathione S-transferase domain-containing protein
1170	 59.93	-2	1240587..1240883	+	98	167645143	-	Caul_1178	-	DNA polymerase beta subunit
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.