IslandPathversion 1.0

IslandPath Analysis: Caulobacter sp. K31



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 67.78 STD DEV: 3.85
Caulobacter sp. K31, complete genome - 1..5477872
5061 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1025	 69.68	0	1092583..1093278	-	231	167644998	-	Caul_1033	-	hydrolase
1026	 67.26	0	1093339..1093506	-	55	167644999	-	Caul_1034	-	hypothetical protein
1027	 70.37	0	1093609..1093743	-	44	167645000	-	Caul_1035	-	hypothetical protein
1028	 72.39	+1	1093979..1094275	-	98	167645001	-	Caul_1036	-	hypothetical protein
1029	 69.67	0	1094552..1095718	+	388	167645002	-	Caul_1037	-	carbamoyl phosphate synthase small subunit
1030	 65.36	0	1095857..1097305	+	482	167645003	-	Caul_1038	-	hypothetical protein
1031	 70.59	0	1097322..1098926	-	534	167645004	-	Caul_1039	-	carboxylesterase type B
1032	 68.93	0	1099968..1101290	-	440	167645005	-	Caul_1040	-	mannanase, putative
1033	 66.08	0	1101437..1101775	+	112	167645006	-	Caul_1041	-	MarR family transcriptional regulator
1034	 67.81	0	1101772..1102209	+	145	167645007	-	Caul_1042	-	activator of Hsp90 ATPase 1 family protein
1035	 68.23	0	1102206..1102844	+	212	167645008	-	Caul_1043	-	glutathione S-transferase domain-containing protein
1036	 70.71	0	1103095..1106187	-	1030	167645009	-	Caul_1044	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
1037	 66.67	0	1106713..1107180	+	155	167645010	-	Caul_1045	-	AsnC family transcriptional regulator
1038	 68.79	0	1107301..1108242	-	313	167645011	-	Caul_1046	-	electron transfer flavoprotein alpha subunit
1039	 65.06	0	1108242..1108988	-	248	167645012	-	Caul_1047	-	electron transfer flavoprotein alpha/beta-subunit
1040	 61.85	-1	1109234..1109503	+	89	167645013	-	Caul_1048	-	hypothetical protein
1041	 70.81	0	1109655..1110233	-	192	167645014	-	Caul_1049	-	ATP--cobalamin adenosyltransferase
1042	 63.13	-1	1110447..1110644	-	65	167645015	-	Caul_1050	-	hypothetical protein
1043	 66.67	0	1110965..1111192	+	75	167645016	-	Caul_1051	-	hypothetical protein
1044	 64.20	0	1111189..1111836	+	215	167645017	-	Caul_1052	-	TetR family transcriptional regulator
1045	 67.16	0	1111917..1112519	+	200	167645018	-	Caul_1053	-	TetR family transcriptional regulator
1046	 68.72	0	1112750..1112944	-	64	167645019	-	Caul_1054	-	hypothetical protein
1047	 69.89	0	1113044..1114687	-	547	167645020	-	Caul_1055	-	beta-lactamase
1048	 70.00	0	1114825..1115814	-	329	167645021	-	Caul_1056	-	hypothetical protein
1049	 62.19	-1	1116162..1116563	+	133	167645022	-	Caul_1057	-	glyoxalase/bleomycin resistance protein/dioxygenase
1050	 64.32	0	1117373..1117756	+	127	167645023	-	Caul_1058	-	hypothetical protein
1051	 68.83	0	1117906..1119615	-	569	167645024	-	Caul_1059	-	acyl-CoA dehydrogenase domain-containing protein
1052	 69.06	0	1119735..1120361	+	208	167645025	-	Caul_1060	-	glutathione S-transferase domain-containing protein
1053	 71.48	0	1120403..1120672	-	89	167645026	-	Caul_1061	-	hypothetical protein
1054	 70.45	0	1120833..1121414	+	193	167645027	-	Caul_1062	-	SH3 type 3 domain-containing protein
1055	 64.01	0	1121695..1123461	-	588	167645028	-	Caul_1063	-	67 kDa myosin-cross-reactive antigen family protein
1056	 70.79	0	1123862..1125025	-	387	167645029	-	Caul_1064	-	Rieske (2Fe-2S) domain-containing protein
1057	 70.60	0	1125203..1126675	-	490	167645030	-	Caul_1065	-	hypothetical protein
1058	 72.26	+1	1126997..1127962	+	321	167645031	-	Caul_1066	-	NAD-dependent epimerase/dehydratase
1059	 66.27	0	1128118..1129392	-	424	167645032	-	Caul_1067	-	crotonyl-CoA reductase
1060	 72.81	+1	1129816..1130547	+	243	167645033	-	Caul_1068	-	enoyl-CoA hydratase/isomerase
1061	 64.81	0	1130829..1130936	+	35	167645034	-	Caul_1069	-	hypothetical protein
1062	 75.40	+1	1130974..1131099	+	41	167645035	-	Caul_1070	-	hypothetical protein
1063	 72.67	+1	1131128..1131460	+	110	167645036	-	Caul_1071	-	hypothetical protein
1064	 67.47	0	1131474..1131722	+	82	167645037	-	Caul_1072	-	hypothetical protein
1065	 76.14	+2	1131719..1132024	+	101	167645038	-	Caul_1073	-	hypothetical protein
1066	 71.58	0	1132131..1133576	-	481	167645039	-	Caul_1074	-	signal transduction histidine kinase
1067	 71.18	0	1133927..1134391	-	154	167645040	-	Caul_1075	-	ferric uptake regulator family protein
1068	 69.51	0	1134506..1136719	-	737	167645041	-	Caul_1076	-	catalase/peroxidase HPI
1069	 74.83	+1	1137007..1137912	+	301	167645042	-	Caul_1077	-	LysR family transcriptional regulator
1070	 72.02	+1	1137964..1140147	-	727	167645043	-	Caul_1078	-	1A family penicillin-binding protein
1071	 71.80	+1	1140444..1141982	-	512	167645044	-	Caul_1079	-	CBS sensor hybrid histidine kinase
1072	 63.29	-1	1142135..1144948	-	937	167645045	-	Caul_1080	-	TonB-dependent receptor
1073	 71.18	0	1145428..1146180	+	250	167645046	-	Caul_1081	-	exsB protein
1074	 67.77	0	1146334..1146966	+	210	167645047	-	Caul_1082	-	hypothetical protein
1075	 69.40	0	1147040..1147405	+	121	167645048	-	Caul_1083	-	queuosine biosynthesis protein QueD
1076	 70.18	0	1147451..1148389	-	312	167645049	-	Caul_1084	-	transposase IS116/IS110/IS902 family protein
1077	 72.09	+1	1148689..1149057	-	122	167645050	-	Caul_1085	-	hypothetical protein
1078	 72.05	+1	1149488..1150936	-	482	167645051	-	Caul_1086	-	RND efflux system outer membrane lipoprotein
1079	 66.57	0	1150936..1154115	-	1059	167645052	-	Caul_1087	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
1080	 69.89	0	1154329..1155507	-	392	167645053	-	Caul_1088	-	RND family efflux transporter MFP subunit
1081	 67.29	0	1155923..1156561	+	212	167645054	-	Caul_1089	-	TetR family transcriptional regulator
1082	 73.68	+1	1157077..1157304	+	75	167645055	-	Caul_1090	-	hypothetical protein
1083	 67.49	0	1157362..1158330	-	322	167645056	-	Caul_1091	-	magnesium and cobalt transport protein CorA
1084	 66.37	0	1158495..1160171	+	558	167645057	-	Caul_1092	-	major facilitator transporter
1085	 71.01	0	1160276..1160782	-	168	167645058	-	Caul_1093	-	hypothetical protein
1086	 70.67	0	1161119..1162243	+	374	167645059	-	Caul_1094	-	AraC family transcriptional regulator
1087	 72.22	+1	1162246..1162749	-	167	167645060	-	Caul_1095	-	GCN5-related N-acetyltransferase
1088	 68.04	0	1162866..1163156	+	96	167645061	-	Caul_1096	-	hypothetical protein
1089	 65.20	0	1163280..1163825	-	181	167645062	-	Caul_1097	-	tail collar domain-containing protein
1090	 64.67	0	1163858..1164409	-	183	167645063	-	Caul_1098	-	tail collar domain-containing protein
1091	 65.19	0	1164447..1164986	-	179	167645064	-	Caul_1099	-	tail collar domain-containing protein
1092	 68.20	0	1165427..1172464	+	2345	167645065	-	Caul_1100	-	hemolysin-type calcium-binding region
1093	 56.17	-2	1172520..1172681	-	53	167645066	-	Caul_1101	-	putative transposase
1094	 68.22	0	1172915..1173301	+	128	167645067	-	Caul_1102	-	putative transposase
1095	 63.92	-1	1173343..1173597	+	84	167645068	-	Caul_1103	-	ISCc1, transposase OrfB
1096	 66.67	0	1173625..1173939	+	104	167645069	-	Caul_1104	-	transposase IS3/IS911 family protein
1097	 67.94	0	1173936..1174796	+	286	167645070	-	Caul_1105	-	integrase catalytic region
1098	 65.88	0	1175065..1175445	+	126	167645071	-	Caul_1106	-	putative transposase of insertion sequence ISRm2011-2, orfA protein
1099	 63.10	-1	1175507..1176010	+	167	167645072	-	Caul_1107	-	transposase and inactivated derivatives-like protein
1100	 60.21	-1	1176040..1176426	-	128	167645073	-	Caul_1108	-	transposase IS4 family protein
1101	 63.14	-1	1176423..1176791	-	122	167645074	-	Caul_1109	-	transposase and inactivated derivative
1102	 65.79	0	1176846..1177757	-	303	167645075	-	Caul_1110	-	formyltetrahydrofolate deformylase
1103	 69.05	0	1178007..1180271	-	754	167645076	-	Caul_1111	-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor
1104	 69.44	0	1180434..1180613	+	59	167645077	-	Caul_1112	-	hypothetical protein
1105	 69.58	0	1180613..1181230	+	205	167645078	-	Caul_1113	-	hypothetical protein
1106	 67.10	0	1181245..1181706	+	153	167645079	-	Caul_1114	-	hypothetical protein
1107	 65.55	0	1181817..1182263	+	148	167645080	-	Caul_1115	-	activator of Hsp90 ATPase 1 family protein
1108	 67.23	0	1182250..1182603	+	117	167645081	-	Caul_1116	-	ArsR family transcriptional regulator
1109	 67.54	0	1182732..1183421	-	229	167645082	-	Caul_1117	-	glyoxalase/bleomycin resistance protein/dioxygenase
1110	 68.85	0	1183541..1184683	+	380	167645083	-	Caul_1118	-	alpha/beta hydrolase fold
1111	 68.75	0	1184735..1186657	-	640	167645084	-	Caul_1119	-	peptidase M61 domain-containing protein
1112	 66.07	0	1186824..1189652	-	942	167645085	-	Caul_1120	-	TonB-dependent receptor
1113	 68.23	0	1189947..1190969	+	340	167645086	-	Caul_1121	-	peptidase S51 dipeptidase E
1114	 69.52	0	1191009..1192025	+	338	167645087	-	Caul_1122	-	peptidase T2 asparaginase 2
1115	 65.10	0	1192058..1192504	+	148	167645088	-	Caul_1123	-	AsnC family transcriptional regulator
1116	 60.21	-1	1192518..1192904	-	128	167645089	-	Caul_1124	-	transposase IS4 family protein
1117	 64.12	0	1192901..1193254	-	117	167645090	-	Caul_1125	-	transposase and inactivated derivative
1118	 71.43	0	1193469..1193804	+	111	167645091	-	Caul_1126	-	AsnC family transcriptional regulator
1119	 70.58	0	1193902..1194924	+	340	167645092	-	Caul_1127	-	hypothetical protein
1120	 70.72	0	1194924..1195958	+	344	167645093	-	Caul_1128	-	mandelate racemase/muconate lactonizing protein
1121	 64.69	0	1195930..1196436	-	168	167645094	-	Caul_1129	-	AsnC family transcriptional regulator
1122	 69.53	0	1196651..1198150	+	499	167645095	-	Caul_1130	-	N-acyl-D-glutamate deacylase
1123	 73.06	+1	1198246..1199481	-	411	167645096	-	Caul_1131	-	putative 3-hydroxyphenylpropionic transporter MhpT
1124	 66.31	0	1199590..1200420	-	276	167645097	-	Caul_1132	-	p-hydroxycinnamoyl CoA hydratase/lyase
67.78	MEAN

3.85	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.