IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
823	 36.16	+1	787627..789498	+	623	57237604	dnaK	CJE0850	-	chaperone protein DnaK
824	 33.02	0	789818..790780	+	320	57237605	-	CJE0851	-	hypothetical protein
825	 30.12	0	790850..791191	+	113	57237606	-	CJE0852	-	hypothetical protein
826	 33.50	0	791252..792421	-	389	57237607	aspC	CJE0853	-	aspartate aminotransferase
827	 33.96	0	792594..793232	-	212	57237608	cysE	CJE0854	-	serine acetyltransferase
828	 32.90	0	793233..795068	-	611	57237609	speA	CJE0855	-	arginine decarboxylase
829	 31.70	0	795065..796291	-	408	57237610	hisS	CJE0856	-	histidyl-tRNA synthetase
830	 29.53	0	796288..796866	-	192	57237611	tdk	CJE0857	-	thymidylate kinase
831	 32.91	0	796857..797333	-	158	57237612	coaD	CJE0858	-	phosphopantetheine adenylyltransferase
832	 30.14	0	797373..797936	-	187	57237613	-	CJE0859	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
833	 29.11	0	797933..798595	-	220	57237614	flgA	CJE0860	-	flagellar basal body P-ring biosynthesis protein FlgA
834	 28.70	0	798679..799455	-	258	57237615	-	CJE0861	-	NLPA family lipoprotein
835	 29.57	0	799465..800235	-	256	57237616	-	CJE0862	-	NLPA family lipoprotein
836	 32.17	0	800284..801057	-	257	57237617	-	CJE0863	-	NLPA family lipoprotein
837	 29.17	0	801247..802158	-	303	57237618	-	CJE0864	-	ABC transporter, permease protein
838	 32.54	0	802155..803165	-	336	57237619	-	CJE0865	-	ABC transporter, ATP-binding protein
839	 31.69	0	803170..805782	-	870	57237620	valS	CJE0866	-	valyl-tRNA synthetase
840	 25.78	-1	805805..806824	-	339	57237621	-	CJE0867	-	hypothetical protein
841	 30.03	0	806953..808983	+	676	57237622	-	CJE0868	-	putative ATP-dependent DNA helicase
842	 30.50	0	809024..809764	+	246	57237623	-	CJE0869	-	major antigenic peptide PEB2
843	 35.80	+1	809863..810390	+	175	57237624	tpx	CJE0870	-	thiol peroxidase
844	 36.32	+1	810637..813411	+	924	57237625	napA	CJE0871	-	nitrate reductase
845	 37.79	+1	813429..814169	+	246	57237626	napG	CJE0872	-	quinol dehydrogenase periplasmic component
846	 30.64	0	814169..814948	+	259	57237627	napH	CJE0873	-	quinol dehydrogenase membrane component
847	 34.67	+1	814948..815469	+	173	57237628	napB	CJE0874	-	periplasmic nitrate reductase, small subunit
848	 24.70	-1	815474..816388	+	304	57237629	napL	CJE0875	-	NapL
849	 25.37	-1	816381..816719	+	112	57237630	napD	CJE0876	-	NapD
850	 20.11	-2	816732..816905	+	57	57237631	-	CJE0877	-	hypothetical protein
851	 30.08	0	816987..817232	+	81	57237632	-	CJE0878	-	hypothetical protein
852	 27.64	0	817229..817720	+	163	57237633	-	CJE0879	-	hypothetical protein
853	 29.55	0	817776..818807	+	343	57237634	-	CJE0880	-	polyA polymerase family protein
854	 29.33	0	818804..819628	+	274	57237635	purU	CJE0881	-	formyltetrahydrofolate deformylase
855	 30.81	0	819625..820893	-	422	57237636	-	CJE0882	-	aminotransferase, putative
856	 23.89	-1	820935..821813	+	292	57237637	-	CJE0883	-	hypothetical protein
857	 30.88	0	821817..822836	+	339	57237638	-	CJE0884	-	sensor histidine kinase
858	 29.50	0	822935..824239	+	434	57237639	-	CJE0885	-	hypothetical protein
859	 28.64	0	824297..825724	-	475	57237640	-	CJE0886	-	Mur ligase family protein
860	 31.25	0	825725..826444	-	239	57237641	-	CJE0887	-	hypothetical protein
861	 30.56	0	826446..826661	-	71	57237642	-	CJE0888	-	prevent-host-death family protein
862	 29.20	0	826721..827761	-	346	57237643	ddl	CJE0889	-	D-alanyl-alanine synthetase A
863	 33.51	0	827771..828322	-	183	57237644	ruvA	CJE0890	-	Holliday junction DNA helicase RuvA
864	 28.44	0	828298..830157	-	619	57237645	-	CJE0891	-	hypothetical protein
865	 29.06	0	830261..831712	+	483	57237646	mviN	CJE0892	-	integral membrane protein MviN
866	 28.94	0	831712..833100	+	462	57237647	cysS	CJE0893	-	cysteinyl-tRNA synthetase
867	 30.64	0	833093..834835	+	580	57237648	-	CJE0894	-	ABC transporter, ATP-binding protein/permease MsbA, putative
868	 30.78	0	834867..835925	+	352	57237649	pyrD	CJE0895	-	dihydroorotate dehydrogenase 2
869	 27.50	0	835922..837172	+	416	57237650	-	CJE0896	-	M16 family peptidase
870	 33.89	0	837165..838061	+	298	57237651	dapA	CJE0897	-	dihydrodipicolinate synthase
871	 35.51	+1	838061..838840	+	259	57237652	-	CJE0898	-	7-alpha-hydroxysteroid dehydrogenase
872	 23.20	-1	838881..839186	-	101	57237653	-	CJE0899	-	hypothetical protein
873	 30.49	0	839198..839794	-	198	57237654	-	CJE0900	-	metallo-beta-lactamase family protein
874	 32.12	0	839868..840608	+	246	57237655	nadE	CJE0901	-	NAD+ synthetase
875	 28.26	0	840612..841538	+	308	57237656	lpxK	CJE0902	-	tetraacyldisaccharide 4'-kinase
876	 30.71	0	841535..842947	+	470	57237657	thrC	CJE0903	-	threonine synthase
877	 30.42	0	842944..843663	+	239	57237658	kdsB	CJE0904	-	3-deoxy-manno-octulosonate cytidylyltransferase
878	 30.37	0	843750..844997	+	415	57237659	-	CJE0905	-	hypothetical protein
879	 31.52	0	845091..845861	+	256	57237660	-	CJE0906	-	amino acid-binding protein
880	 33.61	0	845877..846611	-	244	57237661	fliP	CJE0907	-	flagellar biosynthesis protein FliP
881	 32.64	0	846755..848044	+	429	57237662	glmU	CJE0908	-	UDP-N-acetylglucosamine pyrophosphorylase
882	 31.34	0	848041..849195	+	384	57237663	coaBC	CJE0909	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
883	 26.63	0	849198..849809	+	203	57237664	-	CJE0910	-	hypothetical protein
884	 31.69	0	849813..850481	+	222	57237665	uppS	CJE0911	-	undecaprenyl diphosphate synthase
885	 24.58	-1	850478..851254	+	258	57237666	-	CJE0912	-	A24 family peptidase
886	 29.24	0	851254..852279	+	341	57237667	-	CJE0913	-	hypothetical protein
887	 30.84	0	852279..853001	+	240	57237668	truA	CJE0914	-	tRNA pseudouridine synthase A
888	 33.99	0	852998..854209	-	403	57237669	ilvA	CJE0915	-	threonine dehydratase
889	 24.40	-1	854209..854622	-	137	57237670	-	CJE0916	-	CoA-binding domain-containing protein
890	 27.34	0	854741..855157	+	138	57237671	-	CJE0917	-	hypothetical protein
891	 26.26	0	855144..856217	-	357	57237672	trmA	CJE0918	-	tRNA (uracil-5-)-methyltransferase
892	 34.20	+1	856214..857947	-	577	57237673	-	CJE0919	-	Na+/H+ antiporter family protein
893	 33.87	0	857944..858693	-	249	57237674	-	CJE0920	-	short chain dehydrogenase/reductase family oxidoreductase
894	 28.49	0	858690..859928	-	412	57237675	-	CJE0921	-	ankyrin repeat-containing protein
895	 36.32	+1	859988..862534	-	848	57237676	acnB	CJE0922	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
896	 26.71	0	862589..863041	+	150	57237677	ogt	CJE0923	-	methylated-DNA--protein-cysteine S-methyltransferase
897	 24.63	-1	863033..863974	-	313	57237678	-	CJE0924	-	hypothetical protein
898	 31.37	0	863978..865864	-	628	57237679	metG	CJE0925	-	methionyl-tRNA synthetase
899	 28.28	0	865874..866071	-	65	57237680	-	CJE0926	-	hypothetical protein
900	 32.27	0	866064..866906	-	280	57237681	fbp	CJE0927	-	fructose-1,6-bisphosphatase
901	 28.25	0	866908..867399	-	163	57237682	mobB	CJE0928	-	molybdopterin-guanine dinucleotide biosynthesis protein MobB
902	 25.93	-1	867495..867980	+	161	57237683	-	CJE0929	-	putative lipoprotein
903	 27.92	0	867877..869502	-	541	57237684	-	CJE0930	-	soluble lytic murein transglycosylase, putative
904	 30.85	0	869499..869780	-	93	57237685	-	CJE0931	-	YGGT family protein
905	 30.71	0	869783..871078	-	431	57237686	gltX	CJE0932	-	glutamyl-tRNA synthetase
906	 27.64	0	871164..872288	+	374	57237687	-	CJE0933	-	Ser/Thr protein phosphatase family protein
907	 28.96	0	872285..873085	+	266	57237688	psd	CJE0934	-	phosphatidylserine decarboxylase
908	 32.98	0	873082..873363	-	93	57237689	-	CJE0935	-	FlhB domain-containing protein
909	 26.52	0	873360..875471	-	703	57237690	-	CJE0936	-	hypothetical protein
910	 29.71	0	875464..876651	-	395	57237691	-	CJE0937	-	major facilitator family protein
911	 20.24	-2	876629..877132	-	167	57237692	-	CJE0938	-	hypothetical protein
912	 30.30	0	877132..877461	-	109	57237693	-	CJE0939	-	hypothetical protein
913	 33.88	0	877458..878732	-	424	57237694	hemL	CJE0940	-	glutamate-1-semialdehyde aminotransferase
914	 26.44	0	878729..879076	-	115	57237695	-	CJE0941	-	hypothetical protein
915	 32.98	0	879156..880004	+	282	57237696	folD	CJE0942	-	folD bifunctional protein
916	 32.39	0	880014..880862	+	282	57237697	lepB	CJE0943	-	signal peptidase I
917	 30.40	0	880884..882044	-	386	57237698	-	CJE0944	-	molybdopterin biosynthesis MoeA protein, putative
918	 36.04	+1	882041..883297	-	418	57237699	murA	CJE0945	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
919	 31.70	0	883363..883791	-	142	57237700	-	CJE0946	-	hypothetical protein
920	 28.98	0	883885..884757	+	290	57237701	-	CJE0947	-	integral membrane protein
921	 25.40	-1	884744..885310	-	188	57237702	pabA	CJE0948	-	para-aminobenzoate synthase glutamine amidotransferase, component II
922	 25.71	-1	885307..887091	-	594	57237703	pabB	CJE0949	-	para-aminobenzoate synthase glutamine amidotransferase, component I
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.