IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
32	 35.74	+1	51656..52858	-	400	57237049	-	CJE0034	-	Bcr/CflA subfamily drug resistance transporter
33	 31.19	0	52961..54310	+	449	57237050	-	CJE0035	-	hypothetical protein
34	 36.59	+1	54334..55377	-	347	57237051	-	CJE0036	-	cytochrome c family protein
35	 24.54	-1	55555..56202	-	215	57237052	-	CJE0037	-	hypothetical protein
36	 37.42	+1	56202..58010	-	602	57237053	typA	CJE0038	-	GTP-binding protein TypA
37	 23.15	-1	58145..58468	+	107	57237054	-	CJE0039	-	hypothetical protein
38	 26.52	0	58487..60277	+	596	57237055	-	CJE0040	-	hypothetical protein
39	 36.84	+1	60330..61214	+	294	57237056	flgD	CJE0041	-	flagellar basal body rod modification protein
40	 33.88	0	61218..62855	+	545	57237057	flgE-1	CJE0042	-	flagellar hook protein
41	 25.32	-1	62859..64730	-	623	57237058	-	CJE0043	-	hypothetical protein
42	 27.58	0	64687..65451	-	254	57237059	-	CJE0044	-	hypothetical protein
43	 31.18	0	65697..65789	+	30	57237060	-	CJE0045	-	hypothetical protein
44	 32.74	0	67407..68423	-	338	57237061	trmU	CJE0048	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
45	 31.19	0	68423..69028	-	201	57237062	-	CJE0049	-	lysine decarboxylase family protein
46	 27.67	0	69149..69307	-	52	57237063	-	CJE0050	-	hypothetical protein
47	 23.87	-1	69304..70296	-	330	57237064	-	CJE0051	-	hypothetical protein
48	 31.87	0	70366..70638	-	90	57237065	-	CJE0052	-	hypothetical protein
49	 29.90	0	70677..70880	-	67	57237066	-	CJE0053	-	hypothetical protein
50	 31.58	0	71013..71867	+	284	57237067	-	CJE0054	-	HmcD domain-containing protein
51	 29.48	0	71852..72448	+	198	57237068	-	CJE0055	-	peptidase family protein
52	 33.82	0	72497..73318	-	273	57237069	fliY	CJE0056	-	flagellar motor switch protein FliY
53	 33.98	0	73336..74415	-	359	57237070	fliM	CJE0057	-	flagellar motor switch protein FliM
54	 32.61	0	74415..75107	-	230	57237071	fliA	CJE0058	-	flagellar biosynthesis sigma factor
55	 26.89	0	75088..75444	-	118	57237072	-	CJE0059	-	hypothetical protein
56	 31.26	0	75463..76329	-	288	57237073	-	CJE0060	-	ParaA family ATPase
57	 30.52	0	76322..77776	-	484	57237074	flhF	CJE0061	-	flagellar biosynthesis regulator FlhF
58	 30.59	0	77786..78259	-	157	57237075	folK	CJE0062	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
59	 35.21	+1	78262..78741	-	159	57237076	aroQ	CJE0063	-	3-dehydroquinate dehydratase
60	 28.94	0	78832..80061	+	409	57237077	-	CJE0064	-	chlorohydrolase
61	 32.78	0	80049..80945	+	298	57237078	sppA	CJE0065	-	signal peptide peptidase SppA, 36K type
62	 34.80	+1	81097..82053	+	318	57237079	-	CJE0066	-	hypothetical protein
63	 26.42	0	82050..82208	-	52	57237080	-	CJE0067	-	hypothetical protein
64	 31.05	0	83090..83746	-	218	57237081	-	CJE0069	-	hypothetical protein
65	 35.21	+1	83739..85178	-	479	57237082	-	CJE0070	-	iron-sulfur cluster binding protein
66	 33.33	0	85175..85915	-	246	57237083	-	CJE0071	-	hypothetical protein
67	 34.92	+1	86025..87722	-	565	57237084	lctP	CJE0072	-	L-lactate permease
68	 31.05	0	87894..88463	-	189	57237085	cdtC	CJE0073	-	cytolethal distending toxin, subunit C
69	 36.47	+1	88474..89271	-	265	57237086	cdtB	CJE0074	-	cytolethal distending toxin, subunit B
70	 34.20	+1	89268..90074	-	268	57237087	cdtA	CJE0075	-	cytolethal distending toxin, subunit A
71	 21.85	-2	90151..90420	+	89	57237088	-	CJE0076	-	hypothetical protein
72	 34.87	+1	90421..91983	+	520	57237089	cydA	CJE0077	-	cytochrome d ubiquinol oxidase, subunit I
73	 32.71	0	91983..93107	+	374	57237090	cydB	CJE0078	-	cytochrome d ubiquinol oxidase, subunit II
74	 24.76	-1	93117..93221	+	34	57237091	-	CJE0079	-	hypothetical protein
75	 26.01	-1	93301..93996	-	231	57237092	-	CJE0080	-	aspartate racemase, putative
76	 29.02	0	94116..94811	-	231	57237093	ung	CJE0081	-	uracil-DNA glycosylase
77	 33.40	0	95082..96488	+	468	57237094	aspA	CJE0082	-	aspartate ammonia-lyase
78	 37.40	+1	96514..97842	+	442	57237095	dcuA	CJE0083	-	anaerobic C4-dicarboxylate transporter
79	 27.39	0	97948..99309	+	453	57237096	-	CJE0084	-	putative lipoprotein
80	 27.37	0	99319..99687	+	122	57237097	-	CJE0085	-	putative lipoprotein
81	 34.78	+1	99711..100334	+	207	57237098	-	CJE0086	-	putative lipoprotein
82	 31.02	0	100417..101754	+	445	57237099	-	CJE0087	-	hypothetical protein
83	 32.75	0	101764..102966	+	400	57237100	-	CJE0088	-	hypothetical protein
84	 34.95	+1	103125..103433	+	102	57237101	rplU	CJE0089	-	50S ribosomal protein L21
85	 37.25	+1	103444..103698	+	84	57237102	rpmA	CJE0090	-	50S ribosomal protein L27
86	 35.99	+1	103805..104857	+	350	57237103	obgE	CJE0091	-	GTPase ObgE
87	 32.01	0	104962..105717	+	251	57237104	proB	CJE0092	-	gamma-glutamyl kinase
88	 32.57	0	105791..106708	+	305	57237105	fmt	CJE0093	-	methionyl-tRNA formyltransferase
89	 28.44	0	106671..107324	+	217	57237106	-	CJE0094	-	biotin--protein ligase
90	 31.04	0	107321..108106	+	261	57237107	-	CJE0095	-	ParA family chromosome partitioning ATPase
91	 25.93	-1	108112..108948	+	278	57237108	-	CJE0096	-	ParB family chromosome partitioning protein
92	 28.17	0	109009..109434	+	141	57237109	-	CJE0097	-	F0F1 ATP synthase subunit B'
93	 25.54	-1	109445..109957	+	170	57237110	-	CJE0098	-	F0F1 ATP synthase subunit B
94	 21.84	-2	109960..110481	+	173	57237111	atpH	CJE0099	-	F0F1 ATP synthase subunit delta
95	 35.33	+1	110495..112000	+	501	57237112	atpA	CJE0100	-	F0F1 ATP synthase subunit alpha
96	 28.93	0	112009..112893	+	294	57237113	atpG	CJE0101	-	F0F1 ATP synthase subunit gamma
97	 35.12	+1	112919..114316	+	465	57237114	atpD	CJE0102	-	F0F1 ATP synthase subunit beta
98	 35.13	+1	114320..114709	+	129	57237115	atpC	CJE0103	-	F0F1 ATP synthase subunit epsilon
99	 29.91	0	114709..115263	+	184	57237116	-	CJE0104	-	MotA/TolQ/ExbB proton channel family protein
100	 28.21	0	115272..115661	+	129	57237117	-	CJE0105	-	TonB system transport protein ExbD, putative
101	 29.10	0	115664..116443	+	259	57237118	-	CJE0106	-	TonB domain-containing protein
102	 29.69	0	116453..117661	+	402	57237119	tolB	CJE0107	-	translocation protein TolB
103	 33.94	0	117738..118235	+	165	57237120	-	CJE0108	-	peptidoglycan-associated lipoprotein Omp18
104	 26.27	0	118239..119186	+	315	57237121	-	CJE0109	-	hypothetical protein
105	 36.84	+1	119201..119770	+	189	57237122	slyD	CJE0110	-	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD
106	 33.55	0	119770..120690	+	306	57237123	fabD	CJE0111	-	malonyl CoA-acyl carrier protein transacylase
107	 33.91	0	120687..121376	+	229	57237124	mtnA	CJE0112	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
108	 35.58	+1	121373..122128	+	251	57237125	-	CJE0113	-	PP-loop family protein
109	 27.39	0	122133..122654	+	173	57237126	-	CJE0114	-	pyrazinamidase/nicotinamidase, putative
110	 28.29	0	122654..123268	+	204	57237127	-	CJE0115	-	hypothetical protein
111	 31.37	0	123265..123672	+	135	57237128	-	CJE0116	-	putative metalloprotease
112	 28.41	0	123796..124485	+	229	57237129	-	CJE0117	-	hypothetical protein
113	 33.76	0	124510..125436	-	308	57237130	dusB	CJE0118	-	tRNA-dihydrouridine synthase B
114	 26.04	-1	125433..126419	-	328	57237131	-	CJE0119	-	hypothetical protein
115	 31.40	0	126409..126771	-	120	57237132	-	CJE0120	-	dnaK suppressor protein, putative
116	 27.71	0	126783..127244	-	153	57237133	-	CJE0121	-	hypothetical protein
117	 33.81	0	127234..128076	-	280	57237134	accD	CJE0122	-	acetyl-CoA carboxylase subunit beta
118	 28.63	0	128085..128807	-	240	57237135	-	CJE0123	-	inositol monophosphatase family protein
119	 31.40	0	128807..131026	-	739	57237136	-	CJE0124	-	OMP85 family outer membrane protein
120	 30.31	0	131103..131930	+	275	57237137	tyrA	CJE0125	-	prephenate dehydrogenase
121	 29.84	0	132010..133383	+	457	57237138	-	CJE0126	-	M24/M37 family peptidase
122	 31.19	0	133383..134267	+	294	57237139	lpxC	CJE0127	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
123	 25.62	-1	134306..134707	+	133	57237140	-	CJE0128	-	hypothetical protein
124	 30.94	0	134716..135594	+	292	57237141	thrB	CJE0129	-	homoserine kinase
125	 27.52	0	135619..135876	+	85	57237142	-	CJE0130	-	hypothetical protein
126	 35.09	+1	135863..138478	+	871	57237143	infB	CJE0131	-	translation initiation factor IF-2
127	 31.40	0	138475..138837	+	120	57237144	rbfA	CJE0132	-	ribosome-binding factor A
128	 30.73	0	138827..139249	+	140	57237145	-	CJE0133	-	hypothetical protein
129	 25.19	-1	139354..141342	+	662	57237146	-	CJE0134	-	McrBC restriction endonuclease system, McrB subunit, putative
130	 25.68	-1	141335..142666	+	443	57237147	-	CJE0135	-	hypothetical protein
131	 33.08	0	142655..143458	-	267	57237148	-	CJE0136	-	cation ABC transporter, permease protein
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.