IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
719	 30.23	0	673653..674426	+	257	57236947	dprA	CJE0737	-	DNA processing protein A
720	 34.90	+1	674423..674806	+	127	57236948	-	CJE0738	-	Holliday junction resolvase-like protein
721	 27.86	0	674835..675674	+	279	57236949	-	CJE0739	-	NOL1/NOP2/sun family protein
722	 28.92	0	675850..676347	-	165	57236950	msrA	CJE0740	-	methionine sulfoxide reductase A
723	 31.79	0	676389..676907	-	172	57236951	ppa	CJE0741	-	inorganic pyrophosphatase
724	 34.02	0	676917..677495	-	192	57236952	adk	CJE0742	-	adenylate kinase
725	 35.33	+1	677492..679243	-	583	57236953	aspS	CJE0743	-	aspartyl-tRNA synthetase
726	 28.46	0	679334..680194	+	286	57236954	-	CJE0744	-	ATP-NAD kinase, putative
727	 27.43	0	680194..681717	+	507	57236955	recN	CJE0745	-	DNA repair protein RecN
728	 29.56	0	681823..683067	+	414	57236956	-	CJE0746	-	response regulator/GGDEF domain-containing protein
729	 29.78	0	683058..683873	+	271	57236957	-	CJE0747	-	TatD family hydrolase
730	 28.42	0	683873..684991	+	372	57236958	-	CJE0748	-	membrane-bound lytic murein transglycosylase D, putative
731	 36.71	+1	684951..685778	+	275	57236959	rlpA	CJE0749	-	rare lipoprotein A
732	 30.47	0	685784..686272	+	162	57236960	-	CJE0750	-	YrbI family phosphatase
733	 25.06	-1	686344..686778	+	144	57236961	-	CJE0751	-	hypothetical protein
734	 28.35	0	686760..687221	+	153	57236962	-	CJE0752	-	OstA family protein
735	 25.29	-1	687218..687814	+	198	57236963	-	CJE0753	-	GTPase EngB
736	 24.44	-1	687811..688305	+	164	57236964	-	CJE0754	-	hypothetical protein
737	 31.28	0	688312..690111	+	599	57236965	pbpC	CJE0755	-	penicillin-binding protein 2
738	 32.16	0	690232..692022	-	596	57236966	-	CJE0756	-	M24 family peptidase
739	 30.18	0	692038..693591	-	517	57236967	-	CJE0757	-	di-/tripeptide transporter
740	 26.25	0	694507..694746	-	79	57236968	-	CJE0759	-	hypothetical protein
741	 20.58	-2	695404..695952	-	182	57236969	-	CJE0761	-	hypothetical protein
742	 21.66	-2	696341..697051	-	236	57236970	-	CJE0762	-	hypothetical protein
743	 32.53	0	697038..697913	-	291	57236971	era	CJE0763	-	GTP-binding protein Era
744	 32.95	0	697910..699229	-	439	57236972	hslU	CJE0764	-	ATP-dependent protease ATP-binding subunit
745	 36.65	+1	699226..699768	-	180	57236973	hslV	CJE0765	-	ATP-dependent protease peptidase subunit
746	 33.11	0	699768..700211	-	147	57236974	rplI	CJE0766	-	50S ribosomal protein L9
747	 36.69	+1	700224..701444	-	406	57236975	argG	CJE0767	-	argininosuccinate synthase
748	 31.71	0	701600..701845	+	81	57236976	-	CJE0768	-	S4 domain-containing protein
749	 29.66	0	701842..702249	+	135	57236977	-	CJE0769	-	hypothetical protein
750	 32.66	0	702233..702970	+	245	57236978	-	CJE0770	-	ABC transporter, ATP-binding protein
751	 29.26	0	702970..704220	+	416	57236979	rpoN	CJE0771	-	RNA polymerase factor sigma-54
752	 35.30	+1	704384..705808	+	474	57236980	dcuB	CJE0772	-	anaerobic C4-dicarboxylate transporter
753	 36.84	+1	705950..706063	+	37	57236981	-	CJE0773	-	hypothetical protein
754	 31.53	0	709917..710525	+	202	57236982	-	CJE0776	-	potassium-transporting ATPase, C subunit, putative
755	 33.43	0	712327..714300	-	657	57236983	uvrB	CJE0778	-	excinuclease ABC subunit B
756	 29.87	0	714454..714684	+	76	57236984	-	CJE0779	-	hypothetical protein
757	 28.40	0	714674..714916	+	80	57236985	-	CJE0780	-	hypothetical protein
758	 26.48	0	714913..715350	+	145	57236986	-	CJE0781	-	hypothetical protein
759	 30.10	0	715332..717185	+	617	57236987	priA	CJE0782	-	primosome assembly protein PriA
760	 25.46	-1	717195..718592	-	465	57236988	-	CJE0783	-	invasion phenotype protein
761	 35.29	+1	718738..719811	+	357	57236989	ispG	CJE0785	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
762	 33.62	0	719841..720539	-	232	57236990	flgH	CJE0786	-	flagellar basal body L-ring protein
763	 31.61	0	720629..722134	+	501	57236991	pta	CJE0787	-	phosphate acetyltransferase
764	 32.33	0	722148..723338	+	396	57236992	ackA	CJE0788	-	acetate kinase
765	 26.38	0	723366..727118	-	1250	57236993	-	CJE0789	-	hypothetical protein
766	 27.24	0	727268..727759	+	163	57236994	-	CJE0790	-	hypothetical protein
767	 26.20	0	727747..728685	-	312	57236995	-	CJE0791	-	hypothetical protein
768	 28.19	0	728685..729617	-	310	57236996	mraW	CJE0792	-	S-adenosyl-methyltransferase MraW
769	 26.89	0	729782..731272	+	496	57236997	-	CJE0793	-	peptidyl-prolyl cis-trans isomerase D,-like protein
770	 32.39	0	731275..732657	+	460	57236998	ftsA	CJE0794	-	cell division protein FtsA
771	 35.85	+1	732673..733785	+	370	57236999	ftsZ	CJE0795	-	cell division protein FtsZ
772	 33.58	0	733941..734753	+	270	57237000	-	CJE0796	-	flagellar basal-body rod protein
773	 38.76	+2	734782..735573	+	263	57237001	flgG	CJE0797	-	flagellar basal body rod protein FlgG
774	 33.19	0	735639..737069	-	476	57237002	glnA	CJE0798	-	glutamine synthetase, type I
775	 13.01	-2	737158..737280	-	40	57238721	-	CJE0799	-	hypothetical protein
776	 34.05	+1	737272..737967	+	231	57237003	-	CJE0800	-	hypothetical protein
777	 31.98	0	737964..739217	+	417	57237004	-	CJE0801	-	U32 family peptidase
778	 35.15	+1	739218..739712	+	164	57237005	purE	CJE0802	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
779	 32.06	0	740270..741133	+	287	57237006	glyQ	CJE0804	-	glycyl-tRNA synthetase subunit alpha
780	 26.45	0	741120..741845	+	241	57237007	-	CJE0805	-	hypothetical protein
781	 28.87	0	741855..742571	+	238	57237008	-	CJE0806	-	hypothetical protein
782	 25.99	-1	742568..743725	+	385	57237009	waaA	CJE0807	-	3-deoxy-D-manno-octulosonic-acid transferase
783	 29.75	0	743706..744458	+	250	57237010	-	CJE0808	-	RNA pseudouridylate synthase family protein
784	 33.26	0	744526..745863	+	445	57237011	ffh	CJE0809	-	signal recognition particle protein
785	 35.96	+1	745929..746156	+	75	57237012	rpsP	CJE0810	-	30S ribosomal protein S16
786	 30.45	0	746159..746401	+	80	57237013	-	CJE0811	-	hypothetical protein
787	 25.56	-1	746394..746933	+	179	57237014	rimM	CJE0812	-	16S rRNA processing protein RimM
788	 29.93	0	746930..747634	+	234	57237015	trmD	CJE0813	-	tRNA (guanine-N(1)-)-methyltransferase
789	 33.61	0	747645..748001	+	118	57237016	rplS	CJE0814	-	50S ribosomal protein L19
790	 30.19	0	748135..748548	+	137	57237017	-	CJE0815	-	transthyretin-like protein
791	 34.90	+1	748572..749912	+	446	57237018	-	CJE0816	-	3-deoxy-7-phosphoheptulonate synthase
792	 23.94	-1	749909..750238	+	109	57237019	-	CJE0817	-	hypothetical protein
793	 32.22	0	750686..754288	+	1200	57237020	dnaE	CJE0818	-	DNA polymerase III subunit alpha
794	 30.33	0	754300..754932	-	210	57237021	-	CJE0819	-	hypothetical protein
795	 32.13	0	754967..755716	-	249	57237022	flaC	CJE0820	-	flagellin subunit protein FlaC
796	 26.75	0	755755..756225	-	156	57237023	-	CJE0821	-	hypothetical protein
797	 26.47	0	756238..757053	-	271	57237024	-	CJE0822	-	HemK family modification methylase
798	 28.03	0	757050..758237	-	395	57237025	-	CJE0823	-	M48 family peptidase
799	 30.11	0	758364..758549	+	61	57237026	-	CJE0824	-	hypothetical protein
800	 33.70	0	758546..759088	-	180	57237027	mogA	CJE0825	-	molybdenum cofactor biosynthesis protein
801	 30.59	0	759109..760092	-	327	57237028	corA	CJE0826	-	magnesium and cobalt transport protein CorA
802	 35.15	+1	760209..761255	+	348	57237029	-	CJE0827	-	ABC transporter, periplasmic substrate-binding protein
803	 28.13	0	761266..762591	+	441	57237030	-	CJE0828	-	hypothetical protein
804	 31.35	0	762591..763397	+	268	57237031	-	CJE0829	-	hypothetical protein
805	 29.17	0	763394..764233	+	279	57237032	-	CJE0830	-	ABC transporter, permease protein
806	 30.13	0	764234..765013	+	259	57237033	-	CJE0831	-	ABC transporter, permease protein
807	 31.97	0	765054..766007	+	317	57237034	-	CJE0832	-	ABC transporter, ATP-binding protein
808	 27.23	0	766004..766642	+	212	57237035	-	CJE0833	-	HAD family hydrolase
809	 28.97	0	766666..767421	-	251	57237036	cjaC	CJE0834	-	CjaC
810	 30.91	0	767754..768371	+	205	57237037	-	CJE0835	-	hypothetical protein
811	 35.24	+1	770335..770754	+	139	57237038	-	CJE0837	-	hemagglutination domain-containing protein
812	 29.05	0	771027..771983	+	318	57237039	-	CJE0838	-	hypothetical protein
813	 32.19	0	772064..772414	+	116	57237040	-	CJE0839	-	hypothetical protein
814	 33.55	0	772510..772968	+	152	57237041	-	CJE0840	-	hypothetical protein
815	 29.22	0	773449..773691	+	80	57237042	-	CJE0841	-	hypothetical protein
816	 26.13	-1	773943..774164	+	73	57237043	-	CJE0842	-	hypothetical protein
817	 32.55	0	774415..774669	+	84	57237044	-	CJE0843	-	hypothetical protein
818	 29.53	0	782888..783571	-	227	57237599	tonB	CJE0845	-	TonB
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.