IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
691	 34.01	0	639547..640737	+	396	57238199	-	CJE0708	-	carboxypeptidase
692	 31.88	0	640816..641988	+	390	57238198	-	CJE0709	-	macrolide-specific efflux protein macA
693	 32.55	0	641988..643913	+	641	57238197	-	CJE0710	-	macrolide-specific efflux protein macB
694	 26.99	0	643915..645285	+	456	57238196	-	CJE0711	-	outer membrane efflux protein
695	 28.67	0	645288..646466	-	392	57238195	-	CJE0712	-	hypothetical protein
696	 29.18	0	646453..647463	-	336	57238194	-	CJE0713	-	hypothetical protein
697	 27.16	0	647464..648840	-	458	57238193	algI	CJE0714	-	alginate O-acetyltransferase AlgI
698	 31.75	0	648883..649386	-	167	57238192	ftn	CJE0715	-	nonheme iron-containing ferritin
699	 32.43	0	649566..650561	+	331	57238191	-	CJE0716	-	phosphate ABC transporter, periplasmic phosphate-binding protein, putative
700	 34.32	+1	650571..651485	+	304	57238190	-	CJE0717	-	phosphate ABC transporter, permease protein PstC, putative
701	 34.07	+1	651482..652570	+	362	57238189	-	CJE0718	-	phosphate ABC transporter, permease protein PstA, putative
702	 34.68	+1	652567..653307	+	246	57238188	pstB	CJE0719	-	phosphate ABC transporter, ATP-binding protein
703	 13.13	-2	654603..654701	-	32	57238187	-	CJE0721	-	hypothetical protein
704	 32.35	0	654687..656003	+	438	57238186	-	CJE0722	-	MATE efflux family protein
705	 24.13	-1	655964..656626	+	220	57238185	-	CJE0723	-	hypothetical protein
706	 28.40	0	656668..658188	+	506	57238184	-	CJE0724	-	hypothetical protein
707	 30.27	0	658169..660358	+	729	57238183	hypF	CJE0725	-	[NiFe] hydrogenase maturation protein HypF
708	 35.35	+1	660435..661178	+	247	57238182	hypB	CJE0726	-	hydrogenase accessory protein HypB
709	 31.91	0	661178..661459	+	93	57238181	hypC	CJE0727	-	hydrogenase assembly chaperone HypC/HupF
710	 35.26	+1	661443..662534	+	363	57238180	hypD	CJE0728	-	hydrogenase expression/formation protein HypD
711	 33.85	0	662531..663505	+	324	57238179	hypE	CJE0729	-	hydrogenase expression/formation protein HypE
712	 31.30	0	663505..663849	+	114	57238178	hypA	CJE0730	-	hydrogenase nickel insertion protein HypA
713	 25.10	-1	663944..665971	+	675	57238177	-	CJE0731	-	type III restriction/modification enzyme, methylase subunit
714	 23.46	-1	665952..668513	+	853	57236942	-	CJE0732	-	type III restriction-modification enzyme
715	 28.05	0	668544..669509	-	321	57236943	-	CJE0733	-	DNA polymerase III subunit delta
716	 32.20	0	669502..671436	-	644	57236944	-	CJE0734	-	RNB-like protein
717	 35.58	+1	671555..672577	+	340	57236945	ilvC	CJE0735	-	ketol-acid reductoisomerase
718	 25.76	-1	672581..673663	+	360	57236946	-	CJE0736	-	hypothetical protein
719	 30.23	0	673653..674426	+	257	57236947	dprA	CJE0737	-	DNA processing protein A
720	 34.90	+1	674423..674806	+	127	57236948	-	CJE0738	-	Holliday junction resolvase-like protein
721	 27.86	0	674835..675674	+	279	57236949	-	CJE0739	-	NOL1/NOP2/sun family protein
722	 28.92	0	675850..676347	-	165	57236950	msrA	CJE0740	-	methionine sulfoxide reductase A
723	 31.79	0	676389..676907	-	172	57236951	ppa	CJE0741	-	inorganic pyrophosphatase
724	 34.02	0	676917..677495	-	192	57236952	adk	CJE0742	-	adenylate kinase
725	 35.33	+1	677492..679243	-	583	57236953	aspS	CJE0743	-	aspartyl-tRNA synthetase
726	 28.46	0	679334..680194	+	286	57236954	-	CJE0744	-	ATP-NAD kinase, putative
727	 27.43	0	680194..681717	+	507	57236955	recN	CJE0745	-	DNA repair protein RecN
728	 29.56	0	681823..683067	+	414	57236956	-	CJE0746	-	response regulator/GGDEF domain-containing protein
729	 29.78	0	683058..683873	+	271	57236957	-	CJE0747	-	TatD family hydrolase
730	 28.42	0	683873..684991	+	372	57236958	-	CJE0748	-	membrane-bound lytic murein transglycosylase D, putative
731	 36.71	+1	684951..685778	+	275	57236959	rlpA	CJE0749	-	rare lipoprotein A
732	 30.47	0	685784..686272	+	162	57236960	-	CJE0750	-	YrbI family phosphatase
733	 25.06	-1	686344..686778	+	144	57236961	-	CJE0751	-	hypothetical protein
734	 28.35	0	686760..687221	+	153	57236962	-	CJE0752	-	OstA family protein
735	 25.29	-1	687218..687814	+	198	57236963	-	CJE0753	-	GTPase EngB
736	 24.44	-1	687811..688305	+	164	57236964	-	CJE0754	-	hypothetical protein
737	 31.28	0	688312..690111	+	599	57236965	pbpC	CJE0755	-	penicillin-binding protein 2
738	 32.16	0	690232..692022	-	596	57236966	-	CJE0756	-	M24 family peptidase
739	 30.18	0	692038..693591	-	517	57236967	-	CJE0757	-	di-/tripeptide transporter
740	 26.25	0	694507..694746	-	79	57236968	-	CJE0759	-	hypothetical protein
741	 20.58	-2	695404..695952	-	182	57236969	-	CJE0761	-	hypothetical protein
742	 21.66	-2	696341..697051	-	236	57236970	-	CJE0762	-	hypothetical protein
743	 32.53	0	697038..697913	-	291	57236971	era	CJE0763	-	GTP-binding protein Era
744	 32.95	0	697910..699229	-	439	57236972	hslU	CJE0764	-	ATP-dependent protease ATP-binding subunit
745	 36.65	+1	699226..699768	-	180	57236973	hslV	CJE0765	-	ATP-dependent protease peptidase subunit
746	 33.11	0	699768..700211	-	147	57236974	rplI	CJE0766	-	50S ribosomal protein L9
747	 36.69	+1	700224..701444	-	406	57236975	argG	CJE0767	-	argininosuccinate synthase
748	 31.71	0	701600..701845	+	81	57236976	-	CJE0768	-	S4 domain-containing protein
749	 29.66	0	701842..702249	+	135	57236977	-	CJE0769	-	hypothetical protein
750	 32.66	0	702233..702970	+	245	57236978	-	CJE0770	-	ABC transporter, ATP-binding protein
751	 29.26	0	702970..704220	+	416	57236979	rpoN	CJE0771	-	RNA polymerase factor sigma-54
752	 35.30	+1	704384..705808	+	474	57236980	dcuB	CJE0772	-	anaerobic C4-dicarboxylate transporter
753	 36.84	+1	705950..706063	+	37	57236981	-	CJE0773	-	hypothetical protein
754	 31.53	0	709917..710525	+	202	57236982	-	CJE0776	-	potassium-transporting ATPase, C subunit, putative
755	 33.43	0	712327..714300	-	657	57236983	uvrB	CJE0778	-	excinuclease ABC subunit B
756	 29.87	0	714454..714684	+	76	57236984	-	CJE0779	-	hypothetical protein
757	 28.40	0	714674..714916	+	80	57236985	-	CJE0780	-	hypothetical protein
758	 26.48	0	714913..715350	+	145	57236986	-	CJE0781	-	hypothetical protein
759	 30.10	0	715332..717185	+	617	57236987	priA	CJE0782	-	primosome assembly protein PriA
760	 25.46	-1	717195..718592	-	465	57236988	-	CJE0783	-	invasion phenotype protein
761	 35.29	+1	718738..719811	+	357	57236989	ispG	CJE0785	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
762	 33.62	0	719841..720539	-	232	57236990	flgH	CJE0786	-	flagellar basal body L-ring protein
763	 31.61	0	720629..722134	+	501	57236991	pta	CJE0787	-	phosphate acetyltransferase
764	 32.33	0	722148..723338	+	396	57236992	ackA	CJE0788	-	acetate kinase
765	 26.38	0	723366..727118	-	1250	57236993	-	CJE0789	-	hypothetical protein
766	 27.24	0	727268..727759	+	163	57236994	-	CJE0790	-	hypothetical protein
767	 26.20	0	727747..728685	-	312	57236995	-	CJE0791	-	hypothetical protein
768	 28.19	0	728685..729617	-	310	57236996	mraW	CJE0792	-	S-adenosyl-methyltransferase MraW
769	 26.89	0	729782..731272	+	496	57236997	-	CJE0793	-	peptidyl-prolyl cis-trans isomerase D,-like protein
770	 32.39	0	731275..732657	+	460	57236998	ftsA	CJE0794	-	cell division protein FtsA
771	 35.85	+1	732673..733785	+	370	57236999	ftsZ	CJE0795	-	cell division protein FtsZ
772	 33.58	0	733941..734753	+	270	57237000	-	CJE0796	-	flagellar basal-body rod protein
773	 38.76	+2	734782..735573	+	263	57237001	flgG	CJE0797	-	flagellar basal body rod protein FlgG
774	 33.19	0	735639..737069	-	476	57237002	glnA	CJE0798	-	glutamine synthetase, type I
775	 13.01	-2	737158..737280	-	40	57238721	-	CJE0799	-	hypothetical protein
776	 34.05	+1	737272..737967	+	231	57237003	-	CJE0800	-	hypothetical protein
777	 31.98	0	737964..739217	+	417	57237004	-	CJE0801	-	U32 family peptidase
778	 35.15	+1	739218..739712	+	164	57237005	purE	CJE0802	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
779	 32.06	0	740270..741133	+	287	57237006	glyQ	CJE0804	-	glycyl-tRNA synthetase subunit alpha
780	 26.45	0	741120..741845	+	241	57237007	-	CJE0805	-	hypothetical protein
781	 28.87	0	741855..742571	+	238	57237008	-	CJE0806	-	hypothetical protein
782	 25.99	-1	742568..743725	+	385	57237009	waaA	CJE0807	-	3-deoxy-D-manno-octulosonic-acid transferase
783	 29.75	0	743706..744458	+	250	57237010	-	CJE0808	-	RNA pseudouridylate synthase family protein
784	 33.26	0	744526..745863	+	445	57237011	ffh	CJE0809	-	signal recognition particle protein
785	 35.96	+1	745929..746156	+	75	57237012	rpsP	CJE0810	-	30S ribosomal protein S16
786	 30.45	0	746159..746401	+	80	57237013	-	CJE0811	-	hypothetical protein
787	 25.56	-1	746394..746933	+	179	57237014	rimM	CJE0812	-	16S rRNA processing protein RimM
788	 29.93	0	746930..747634	+	234	57237015	trmD	CJE0813	-	tRNA (guanine-N(1)-)-methyltransferase
789	 33.61	0	747645..748001	+	118	57237016	rplS	CJE0814	-	50S ribosomal protein L19
790	 30.19	0	748135..748548	+	137	57237017	-	CJE0815	-	transthyretin-like protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.