IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
651	 33.26	0	603536..604912	+	458	57238239	dnaB	CJE0667	-	replicative DNA helicase
652	 29.77	0	605017..605577	+	186	57238238	-	CJE0668	-	hypothetical protein
653	 30.92	0	605568..605774	+	68	57238237	-	CJE0669	-	hypothetical protein
654	 27.34	0	605904..606971	+	355	57238236	-	CJE0670	-	GTP-binding protein
655	 25.73	-1	606982..607152	+	56	57238235	-	CJE0671	-	hypothetical protein
656	 29.08	0	607166..607471	+	101	57238234	-	CJE0672	-	hypothetical protein
657	 28.87	0	608545..609417	+	290	57238233	-	CJE0674	-	transcriptional regulator, putative
658	 32.16	0	609716..610735	+	339	57238232	ribB	CJE0675	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
659	 29.28	0	610747..611190	+	147	57238231	-	CJE0676	-	GatB/Yqey family protein
660	 35.86	+1	611208..612908	+	566	57238230	ilvB	CJE0677	-	acetolactate synthase 3 catalytic subunit
661	 30.75	0	612905..613369	+	154	57238229	ilvH	CJE0678	-	acetolactate synthase 3 regulatory subunit
662	 33.13	0	613366..614331	+	321	57238228	lpxD	CJE0679	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
663	 31.78	0	614320..615348	-	342	57238227	queA	CJE0680	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
664	 32.38	0	615341..616078	-	245	57238226	tatC	CJE0681	-	Sec-independent protein translocase TatC
665	 28.54	0	616071..616487	-	138	57238225	tatB	CJE0682	-	sec-independent translocase
666	 26.12	-1	616545..617612	-	355	57238224	-	CJE0683	-	coproporphyrinogen III oxidase
667	 28.87	0	617713..618183	+	156	57238223	nidH	CJE0684	-	dinucleoside polyphosphate hydrolase
668	 35.25	+1	618185..619387	+	400	57238222	-	CJE0685	-	aspartate kinase
669	 31.66	0	619388..619924	+	178	57238221	-	CJE0686	-	hypothetical protein
670	 25.67	-1	619930..620529	+	199	57238220	-	CJE0687	-	DNA polymerase III subunit delta'
671	 29.75	0	620531..621673	+	380	57238219	folP	CJE0688	-	dihydropteroate synthase
672	 34.21	+1	621674..623617	+	647	57238218	ligA	CJE0689	-	NAD-dependent DNA ligase LigA
673	 20.80	-2	623598..624602	+	334	57238217	-	CJE0690	-	hypothetical protein
674	 25.98	-1	624599..625360	+	253	57238216	tlyA	CJE0691	-	hemolysin A
675	 27.02	0	625326..626180	+	284	57238215	-	CJE0692	-	bifunctional riboflavin kinase/FMN adenylyltransferase
676	 28.53	0	626170..626877	+	235	57238214	-	CJE0693	-	methyltransferase, putative
677	 30.09	0	626867..627082	-	71	57238213	-	CJE0694	-	putative lipoprotein
678	 28.74	0	627085..627519	-	144	57238212	-	CJE0695	-	hypothetical protein
679	 35.55	+1	627577..628209	-	210	57238211	-	CJE0696	-	hypothetical protein
680	 28.11	0	628220..628870	-	216	57238210	-	CJE0697	-	DNA/RNA non-specific endonuclease
681	 31.26	0	628867..629493	-	208	57238209	nth	CJE0698	-	endonuclease III
682	 30.78	0	629574..630395	+	273	57238208	-	CJE0699	-	major antigenic peptide PEB4
683	 35.02	+1	630395..631459	+	354	57238207	fbaA	CJE0700	-	fructose-bisphosphate aldolase
684	 29.73	0	631554..632996	+	480	57238206	-	CJE0701	-	hypothetical protein
685	 28.51	0	632993..633946	+	317	57238205	-	CJE0702	-	chemotaxis protein MotB, putative
686	 26.94	0	633933..634808	+	291	57238204	-	CJE0703	-	hypothetical protein
687	 31.32	0	634800..636143	-	447	57238203	-	CJE0704	-	sodium-dependent transporter, putative
688	 29.00	0	636194..636862	-	222	57238202	-	CJE0705	-	MOSC domain-containing protein
689	 27.23	0	636859..638562	-	567	57238201	dsbD	CJE0706	-	thiol:disulfide interchange protein DsbD
690	 32.31	0	638657..639538	+	293	57238200	-	CJE0707	-	hypothetical protein
691	 34.01	0	639547..640737	+	396	57238199	-	CJE0708	-	carboxypeptidase
692	 31.88	0	640816..641988	+	390	57238198	-	CJE0709	-	macrolide-specific efflux protein macA
693	 32.55	0	641988..643913	+	641	57238197	-	CJE0710	-	macrolide-specific efflux protein macB
694	 26.99	0	643915..645285	+	456	57238196	-	CJE0711	-	outer membrane efflux protein
695	 28.67	0	645288..646466	-	392	57238195	-	CJE0712	-	hypothetical protein
696	 29.18	0	646453..647463	-	336	57238194	-	CJE0713	-	hypothetical protein
697	 27.16	0	647464..648840	-	458	57238193	algI	CJE0714	-	alginate O-acetyltransferase AlgI
698	 31.75	0	648883..649386	-	167	57238192	ftn	CJE0715	-	nonheme iron-containing ferritin
699	 32.43	0	649566..650561	+	331	57238191	-	CJE0716	-	phosphate ABC transporter, periplasmic phosphate-binding protein, putative
700	 34.32	+1	650571..651485	+	304	57238190	-	CJE0717	-	phosphate ABC transporter, permease protein PstC, putative
701	 34.07	+1	651482..652570	+	362	57238189	-	CJE0718	-	phosphate ABC transporter, permease protein PstA, putative
702	 34.68	+1	652567..653307	+	246	57238188	pstB	CJE0719	-	phosphate ABC transporter, ATP-binding protein
703	 13.13	-2	654603..654701	-	32	57238187	-	CJE0721	-	hypothetical protein
704	 32.35	0	654687..656003	+	438	57238186	-	CJE0722	-	MATE efflux family protein
705	 24.13	-1	655964..656626	+	220	57238185	-	CJE0723	-	hypothetical protein
706	 28.40	0	656668..658188	+	506	57238184	-	CJE0724	-	hypothetical protein
707	 30.27	0	658169..660358	+	729	57238183	hypF	CJE0725	-	[NiFe] hydrogenase maturation protein HypF
708	 35.35	+1	660435..661178	+	247	57238182	hypB	CJE0726	-	hydrogenase accessory protein HypB
709	 31.91	0	661178..661459	+	93	57238181	hypC	CJE0727	-	hydrogenase assembly chaperone HypC/HupF
710	 35.26	+1	661443..662534	+	363	57238180	hypD	CJE0728	-	hydrogenase expression/formation protein HypD
711	 33.85	0	662531..663505	+	324	57238179	hypE	CJE0729	-	hydrogenase expression/formation protein HypE
712	 31.30	0	663505..663849	+	114	57238178	hypA	CJE0730	-	hydrogenase nickel insertion protein HypA
713	 25.10	-1	663944..665971	+	675	57238177	-	CJE0731	-	type III restriction/modification enzyme, methylase subunit
714	 23.46	-1	665952..668513	+	853	57236942	-	CJE0732	-	type III restriction-modification enzyme
715	 28.05	0	668544..669509	-	321	57236943	-	CJE0733	-	DNA polymerase III subunit delta
716	 32.20	0	669502..671436	-	644	57236944	-	CJE0734	-	RNB-like protein
717	 35.58	+1	671555..672577	+	340	57236945	ilvC	CJE0735	-	ketol-acid reductoisomerase
718	 25.76	-1	672581..673663	+	360	57236946	-	CJE0736	-	hypothetical protein
719	 30.23	0	673653..674426	+	257	57236947	dprA	CJE0737	-	DNA processing protein A
720	 34.90	+1	674423..674806	+	127	57236948	-	CJE0738	-	Holliday junction resolvase-like protein
721	 27.86	0	674835..675674	+	279	57236949	-	CJE0739	-	NOL1/NOP2/sun family protein
722	 28.92	0	675850..676347	-	165	57236950	msrA	CJE0740	-	methionine sulfoxide reductase A
723	 31.79	0	676389..676907	-	172	57236951	ppa	CJE0741	-	inorganic pyrophosphatase
724	 34.02	0	676917..677495	-	192	57236952	adk	CJE0742	-	adenylate kinase
725	 35.33	+1	677492..679243	-	583	57236953	aspS	CJE0743	-	aspartyl-tRNA synthetase
726	 28.46	0	679334..680194	+	286	57236954	-	CJE0744	-	ATP-NAD kinase, putative
727	 27.43	0	680194..681717	+	507	57236955	recN	CJE0745	-	DNA repair protein RecN
728	 29.56	0	681823..683067	+	414	57236956	-	CJE0746	-	response regulator/GGDEF domain-containing protein
729	 29.78	0	683058..683873	+	271	57236957	-	CJE0747	-	TatD family hydrolase
730	 28.42	0	683873..684991	+	372	57236958	-	CJE0748	-	membrane-bound lytic murein transglycosylase D, putative
731	 36.71	+1	684951..685778	+	275	57236959	rlpA	CJE0749	-	rare lipoprotein A
732	 30.47	0	685784..686272	+	162	57236960	-	CJE0750	-	YrbI family phosphatase
733	 25.06	-1	686344..686778	+	144	57236961	-	CJE0751	-	hypothetical protein
734	 28.35	0	686760..687221	+	153	57236962	-	CJE0752	-	OstA family protein
735	 25.29	-1	687218..687814	+	198	57236963	-	CJE0753	-	GTPase EngB
736	 24.44	-1	687811..688305	+	164	57236964	-	CJE0754	-	hypothetical protein
737	 31.28	0	688312..690111	+	599	57236965	pbpC	CJE0755	-	penicillin-binding protein 2
738	 32.16	0	690232..692022	-	596	57236966	-	CJE0756	-	M24 family peptidase
739	 30.18	0	692038..693591	-	517	57236967	-	CJE0757	-	di-/tripeptide transporter
740	 26.25	0	694507..694746	-	79	57236968	-	CJE0759	-	hypothetical protein
741	 20.58	-2	695404..695952	-	182	57236969	-	CJE0761	-	hypothetical protein
742	 21.66	-2	696341..697051	-	236	57236970	-	CJE0762	-	hypothetical protein
743	 32.53	0	697038..697913	-	291	57236971	era	CJE0763	-	GTP-binding protein Era
744	 32.95	0	697910..699229	-	439	57236972	hslU	CJE0764	-	ATP-dependent protease ATP-binding subunit
745	 36.65	+1	699226..699768	-	180	57236973	hslV	CJE0765	-	ATP-dependent protease peptidase subunit
746	 33.11	0	699768..700211	-	147	57236974	rplI	CJE0766	-	50S ribosomal protein L9
747	 36.69	+1	700224..701444	-	406	57236975	argG	CJE0767	-	argininosuccinate synthase
748	 31.71	0	701600..701845	+	81	57236976	-	CJE0768	-	S4 domain-containing protein
749	 29.66	0	701842..702249	+	135	57236977	-	CJE0769	-	hypothetical protein
750	 32.66	0	702233..702970	+	245	57236978	-	CJE0770	-	ABC transporter, ATP-binding protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.