IslandPathversion 1.0

IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 30.10 STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
560	 28.94	0	514508..515509	+	333	57237575	-	CJE0573	-	hypothetical protein
561	 27.78	0	515520..516167	+	215	57237576	-	CJE0574	-	hypothetical protein
562	 26.51	0	516185..516565	+	126	57237577	-	CJE0575	-	hypothetical protein
563	 31.52	0	516565..516951	+	128	57237578	-	CJE0576	-	hypothetical protein
564	 32.17	0	516948..518240	+	430	57237579	-	CJE0577	-	terminase B protein, putative
565	 25.27	-1	518230..518502	+	90	57237580	-	CJE0578	-	hypothetical protein
566	 30.93	0	518483..520021	+	512	57237581	-	CJE0579	-	hypothetical protein
567	 23.04	-1	520014..520217	+	67	57237582	-	CJE0580	-	hypothetical protein
568	 33.02	0	520207..520854	+	215	57237583	-	CJE0581	-	hypothetical protein
569	 29.10	0	520865..521242	+	125	57237584	-	CJE0582	-	hypothetical protein
570	 30.20	0	521507..522718	+	403	57237585	-	CJE0583	-	hypothetical protein
571	 28.58	0	522718..526419	+	1233	57237586	-	CJE0584	-	hypothetical protein
572	 22.81	-1	526698..527543	-	281	57237587	-	CJE0585	-	hypothetical protein
573	 21.74	-2	527553..527759	-	68	57237588	-	CJE0586	-	hypothetical protein
574	 33.53	0	527979..529013	+	344	57237589	-	CJE0587	-	hypothetical protein
575	 29.14	0	529013..529417	+	134	57237590	-	CJE0588	-	hypothetical protein
576	 26.77	0	529395..529592	+	65	57237591	-	CJE0589	-	hypothetical protein
577	 25.50	-1	529595..532237	+	880	57237592	-	CJE0590	-	hypothetical protein
578	 31.34	0	532338..532688	+	116	57237593	-	CJE0591	-	hypothetical protein
579	 24.53	-1	532701..533336	+	211	57237594	-	CJE0592	-	hypothetical protein
580	 30.21	0	533333..533716	+	127	57237595	-	CJE0593	-	hypothetical protein
581	 30.67	0	533709..534083	+	124	57237596	-	CJE0594	-	hypothetical protein
582	 27.87	0	534080..535360	+	426	57237597	-	CJE0595	-	hypothetical protein
583	 18.52	-2	535302..535409	+	35	57238719	-	CJE0596	-	hypothetical protein
584	 28.76	0	535409..535867	+	152	57237598	-	CJE0597	-	hypothetical protein
585	 26.90	0	535929..536348	+	139	57238304	-	CJE0598	-	hypothetical protein
586	 27.78	0	536266..536463	+	65	57238720	-	CJE0599	-	hypothetical protein
587	 31.50	0	536456..536947	+	163	57238303	-	CJE0600	-	hypothetical protein
588	 28.00	0	537061..538671	+	536	57238302	-	CJE0601	-	hypothetical protein
589	 24.67	-1	538788..538937	+	49	57238301	-	CJE0602	-	hypothetical protein
590	 27.07	0	538943..539644	+	233	57238300	-	CJE0603	-	hypothetical protein
591	 29.33	0	539634..540008	+	124	57238299	-	CJE0604	-	hypothetical protein
592	 27.39	0	539981..541258	+	425	57238298	-	CJE0605	-	putative lipoprotein
593	 32.30	0	541255..542031	+	258	57238297	trpC	CJE0606	-	indole-3-glycerol phosphate synthase
594	 35.19	+1	542041..542526	+	161	57238296	-	CJE0607	-	Hit family protein
595	 30.33	0	542516..543514	+	332	57238295	-	CJE0608	-	tRNA 2-selenouridine synthase
596	 27.74	0	545084..545995	-	303	57238294	hemH	CJE0610	-	ferrochelatase
597	 29.18	0	545992..546858	-	288	57238293	-	CJE0611	-	Gfo/Idh/MocA family oxidoreductase
598	 32.50	0	546863..547936	-	357	57238292	-	CJE0612	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
599	 34.12	+1	548051..550579	+	842	57238291	alaS	CJE0613	-	alanyl-tRNA synthetase
600	 28.26	0	550579..551130	+	183	57238290	maf	CJE0614	-	Maf-like protein
601	 33.02	0	551127..553058	+	643	57238289	pbpA	CJE0615	-	penicillin-binding protein 1A
602	 32.40	0	553086..555659	-	857	57238288	clpB	CJE0616	-	ATP-dependent chaperone protein ClpB
603	 31.27	0	555771..556061	-	96	57238287	-	CJE0617	-	hypothetical protein
604	 31.01	0	556188..557522	+	444	57238286	ctpA	CJE0618	-	carboxyl-terminal protease
605	 29.54	0	557524..558234	+	236	57238285	purC	CJE0619	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
606	 28.05	0	558243..558488	+	81	57238284	purS	CJE0620	-	phosphoribosylformylglycinamidine synthase, purS protein
607	 31.79	0	558490..559137	+	215	57238283	purQ	CJE0621	-	phosphoribosylformylglycinamidine synthase subunit I
608	 28.11	0	559221..560330	+	369	57238282	-	CJE0622	-	hypothetical protein
609	 28.86	0	560311..561003	+	230	57238281	-	CJE0623	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
610	 27.37	0	560997..561365	+	122	57238280	-	CJE0624	-	hypothetical protein
611	 29.45	0	561438..563264	+	608	57238279	htpG	CJE0625	-	heat shock protein 90
612	 34.59	+1	563261..563578	+	105	57238278	-	CJE0626	-	hypothetical protein
613	 27.36	0	563578..564012	+	144	57238277	-	CJE0627	-	hypothetical protein
614	 29.04	0	564133..565785	+	550	57238276	-	CJE0628	-	Na/Pi-cotransporter, putative
615	 30.80	0	565800..567539	-	579	57238275	-	CJE0629	-	penicillin-binding protein
616	 30.30	0	567597..567893	-	98	57238274	fliE	CJE0630	-	flagellar hook-basal body protein FliE
617	 33.94	0	567900..568394	-	164	57238273	flgC	CJE0631	-	flagellar basal body rod protein FlgC
618	 31.48	0	568404..568835	-	143	57238272	flgB	CJE0632	-	flagellar basal body rod protein FlgB
619	 29.68	0	568915..569817	-	300	57238271	-	CJE0633	-	hypothetical protein
620	 25.05	-1	569831..572401	+	856	57238270	-	CJE0634	-	hypothetical protein
621	 32.38	0	572518..574722	+	734	57238269	icd	CJE0635	-	isocitrate dehydrogenase, NADP-dependent
622	 30.90	0	574719..575621	+	300	57238268	mdh	CJE0636	-	malate dehydrogenase
623	 34.62	+1	575622..576785	+	387	57238267	sucC	CJE0637	-	succinyl-CoA synthase, beta subunit
624	 37.82	+1	576795..577664	+	289	57238266	sucD	CJE0638	-	succinyl-CoA synthase, alpha subunit
625	 40.71	+2	577678..577989	+	103	57238265	oorD	CJE0639	-	2-oxoglutarate-acceptor oxidoreductase subunit OorD
626	 36.00	+1	577998..579122	+	374	57238264	oorA	CJE0640	-	2-oxoglutarate-acceptor oxidoreductase subunit OorA
627	 34.63	+1	579123..579968	+	281	57238263	oorB	CJE0641	-	2-oxoglutarate-acceptor oxidoreductase subunit OorB
628	 36.20	+1	579965..580522	+	185	57238262	oorC	CJE0642	-	2-oxoglutarate-acceptor oxidoreductase subunit OorC
629	 26.89	0	580661..580924	+	87	57238261	-	CJE0643	-	hypothetical protein
630	 27.56	0	580927..581463	+	178	57238260	-	CJE0644	-	hypothetical protein
631	 28.30	0	581477..582370	+	297	57238259	-	CJE0645	-	polyprenyl synthetase family protein
632	 30.79	0	582370..583668	+	432	57238258	hemA	CJE0646	-	glutamyl-tRNA reductase
633	 32.22	0	583652..585361	+	569	57238257	proS	CJE0647	-	prolyl-tRNA synthetase
634	 25.38	-1	585358..585747	+	129	57238256	-	CJE0648	-	hypothetical protein
635	 32.47	0	585744..586667	+	307	57238255	hemC	CJE0649	-	porphobilinogen deaminase
636	 29.78	0	586664..588466	+	600	57238254	-	CJE0650	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative
637	 37.43	+1	588622..588987	+	121	57238253	flaG	CJE0651	-	flagellar protein FlaG
638	 32.44	0	588990..590900	+	636	57238252	fliD	CJE0652	-	flagellar capping protein
639	 32.30	0	590912..591298	+	128	57238251	fliS	CJE0653	-	flagellar protein FliS
640	 26.81	0	591279..591554	+	91	57238250	-	CJE0654	-	hypothetical protein
641	 35.44	+1	591986..592555	+	189	57238249	efp	CJE0655	-	elongation factor P
642	 32.18	0	592715..593407	+	230	57238248	-	CJE0656	-	hypothetical protein
643	 31.45	0	593394..594347	+	317	57238247	-	CJE0657	-	hypothetical protein
644	 31.14	0	594357..595361	+	334	57238246	-	CJE0658	-	hypothetical protein
645	 30.15	0	595486..596772	+	428	57238245	-	CJE0659	-	hypothetical protein
646	 25.81	-1	596783..597580	+	265	57238244	-	CJE0660	-	hypothetical protein
647	 31.58	0	597577..598662	-	361	57238243	-	CJE0661	-	hypothetical protein
648	 31.31	0	598659..599891	-	410	57238242	proA	CJE0662	-	gamma-glutamyl phosphate reductase
649	 32.16	0	599962..600897	+	311	57238241	-	CJE0663	-	pyridine nucleotide-disulphide oxidoreductase family protein
650	 30.65	0	602453..603382	-	309	57238240	-	CJE0666	-	hypothetical protein
651	 33.26	0	603536..604912	+	458	57238239	dnaB	CJE0667	-	replicative DNA helicase
652	 29.77	0	605017..605577	+	186	57238238	-	CJE0668	-	hypothetical protein
653	 30.92	0	605568..605774	+	68	57238237	-	CJE0669	-	hypothetical protein
654	 27.34	0	605904..606971	+	355	57238236	-	CJE0670	-	GTP-binding protein
655	 25.73	-1	606982..607152	+	56	57238235	-	CJE0671	-	hypothetical protein
656	 29.08	0	607166..607471	+	101	57238234	-	CJE0672	-	hypothetical protein
657	 28.87	0	608545..609417	+	290	57238233	-	CJE0674	-	transcriptional regulator, putative
658	 32.16	0	609716..610735	+	339	57238232	ribB	CJE0675	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
659	 29.28	0	610747..611190	+	147	57238231	-	CJE0676	-	GatB/Yqey family protein
30.10	MEAN

3.94	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.