IslandPath Analysis: Campylobacter jejuni RM1221



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.10   STD DEV: 3.94
Campylobacter jejuni RM1221, complete genome - 1..1777831
1838 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
533	 25.60	-1	500062..500604	-	180	57237548	-	CJE0546	-	pentapeptide repeat-containing protein
534	 19.79	-2	500614..500805	-	63	57237549	-	CJE0547	-	hypothetical protein
535	 30.42	0	501182..501799	-	205	57237550	-	CJE0548	-	phage anti-repressor protein, putative
536	 24.75	-1	501935..502330	-	131	57237551	-	CJE0549	-	hypothetical protein
537	 29.48	0	502374..503126	-	250	57237552	-	CJE0550	-	site-specific DNA-methyltransferase, putative
538	 24.94	-1	503107..503547	-	146	57237553	-	CJE0551	-	hypothetical protein
539	 22.52	-1	503622..503732	-	36	57237554	-	CJE0552	-	hypothetical protein
540	 24.62	-1	503790..504053	-	87	57237555	-	CJE0553	-	hypothetical protein
541	 27.30	0	504034..504729	-	231	57237556	-	CJE0554	-	hypothetical protein
542	 29.00	0	504729..505466	-	245	57237557	-	CJE0555	-	hypothetical protein
543	 29.47	0	505468..506322	-	284	57237558	-	CJE0556	-	hypothetical protein
544	 23.25	-1	506324..506551	-	75	57237559	-	CJE0557	-	hypothetical protein
545	 22.48	-1	506542..506799	-	85	57237560	-	CJE0558	-	hypothetical protein
546	 22.59	-1	506790..507059	-	89	57237561	-	CJE0559	-	hypothetical protein
547	 30.56	0	507286..507393	-	35	57237562	-	CJE0560	-	hypothetical protein
548	 26.01	-1	507621..507893	-	90	57237563	-	CJE0561	-	hypothetical protein
549	 27.59	0	508148..508843	+	231	57237564	-	CJE0562	-	hypothetical protein
550	 20.70	-2	508862..509233	-	123	57237565	-	CJE0563	-	hypothetical protein
551	 22.47	-1	509223..509756	-	177	57237566	-	CJE0564	-	hypothetical protein
552	 23.42	-1	509753..510418	-	221	57237567	-	CJE0565	-	hypothetical protein
553	 29.66	0	510498..511151	-	217	57237568	-	CJE0566	-	DNA/RNA non-specific endonuclease
554	 22.94	-1	511157..511849	-	230	57237569	-	CJE0567	-	hypothetical protein
555	 22.69	-1	511857..512645	-	262	57237570	-	CJE0568	-	hypothetical protein
556	 25.31	-1	512642..513376	-	244	57237571	-	CJE0569	-	phage repressor protein, putative
557	 28.89	0	513488..513712	+	74	57237572	-	CJE0570	-	hypothetical protein
558	 23.78	-1	513709..514137	+	142	57237573	-	CJE0571	-	hypothetical protein
559	 27.78	0	514134..514511	+	125	57237574	-	CJE0572	-	putative lipoprotein
560	 28.94	0	514508..515509	+	333	57237575	-	CJE0573	-	hypothetical protein
561	 27.78	0	515520..516167	+	215	57237576	-	CJE0574	-	hypothetical protein
562	 26.51	0	516185..516565	+	126	57237577	-	CJE0575	-	hypothetical protein
563	 31.52	0	516565..516951	+	128	57237578	-	CJE0576	-	hypothetical protein
564	 32.17	0	516948..518240	+	430	57237579	-	CJE0577	-	terminase B protein, putative
565	 25.27	-1	518230..518502	+	90	57237580	-	CJE0578	-	hypothetical protein
566	 30.93	0	518483..520021	+	512	57237581	-	CJE0579	-	hypothetical protein
567	 23.04	-1	520014..520217	+	67	57237582	-	CJE0580	-	hypothetical protein
568	 33.02	0	520207..520854	+	215	57237583	-	CJE0581	-	hypothetical protein
569	 29.10	0	520865..521242	+	125	57237584	-	CJE0582	-	hypothetical protein
570	 30.20	0	521507..522718	+	403	57237585	-	CJE0583	-	hypothetical protein
571	 28.58	0	522718..526419	+	1233	57237586	-	CJE0584	-	hypothetical protein
572	 22.81	-1	526698..527543	-	281	57237587	-	CJE0585	-	hypothetical protein
573	 21.74	-2	527553..527759	-	68	57237588	-	CJE0586	-	hypothetical protein
574	 33.53	0	527979..529013	+	344	57237589	-	CJE0587	-	hypothetical protein
575	 29.14	0	529013..529417	+	134	57237590	-	CJE0588	-	hypothetical protein
576	 26.77	0	529395..529592	+	65	57237591	-	CJE0589	-	hypothetical protein
577	 25.50	-1	529595..532237	+	880	57237592	-	CJE0590	-	hypothetical protein
578	 31.34	0	532338..532688	+	116	57237593	-	CJE0591	-	hypothetical protein
579	 24.53	-1	532701..533336	+	211	57237594	-	CJE0592	-	hypothetical protein
580	 30.21	0	533333..533716	+	127	57237595	-	CJE0593	-	hypothetical protein
581	 30.67	0	533709..534083	+	124	57237596	-	CJE0594	-	hypothetical protein
582	 27.87	0	534080..535360	+	426	57237597	-	CJE0595	-	hypothetical protein
583	 18.52	-2	535302..535409	+	35	57238719	-	CJE0596	-	hypothetical protein
584	 28.76	0	535409..535867	+	152	57237598	-	CJE0597	-	hypothetical protein
585	 26.90	0	535929..536348	+	139	57238304	-	CJE0598	-	hypothetical protein
586	 27.78	0	536266..536463	+	65	57238720	-	CJE0599	-	hypothetical protein
587	 31.50	0	536456..536947	+	163	57238303	-	CJE0600	-	hypothetical protein
588	 28.00	0	537061..538671	+	536	57238302	-	CJE0601	-	hypothetical protein
589	 24.67	-1	538788..538937	+	49	57238301	-	CJE0602	-	hypothetical protein
590	 27.07	0	538943..539644	+	233	57238300	-	CJE0603	-	hypothetical protein
591	 29.33	0	539634..540008	+	124	57238299	-	CJE0604	-	hypothetical protein
592	 27.39	0	539981..541258	+	425	57238298	-	CJE0605	-	putative lipoprotein
593	 32.30	0	541255..542031	+	258	57238297	trpC	CJE0606	-	indole-3-glycerol phosphate synthase
594	 35.19	+1	542041..542526	+	161	57238296	-	CJE0607	-	Hit family protein
595	 30.33	0	542516..543514	+	332	57238295	-	CJE0608	-	tRNA 2-selenouridine synthase
596	 27.74	0	545084..545995	-	303	57238294	hemH	CJE0610	-	ferrochelatase
597	 29.18	0	545992..546858	-	288	57238293	-	CJE0611	-	Gfo/Idh/MocA family oxidoreductase
598	 32.50	0	546863..547936	-	357	57238292	-	CJE0612	-	DegT/DnrJ/EryC1/StrS aminotransferase family protein
599	 34.12	+1	548051..550579	+	842	57238291	alaS	CJE0613	-	alanyl-tRNA synthetase
600	 28.26	0	550579..551130	+	183	57238290	maf	CJE0614	-	Maf-like protein
601	 33.02	0	551127..553058	+	643	57238289	pbpA	CJE0615	-	penicillin-binding protein 1A
602	 32.40	0	553086..555659	-	857	57238288	clpB	CJE0616	-	ATP-dependent chaperone protein ClpB
603	 31.27	0	555771..556061	-	96	57238287	-	CJE0617	-	hypothetical protein
604	 31.01	0	556188..557522	+	444	57238286	ctpA	CJE0618	-	carboxyl-terminal protease
605	 29.54	0	557524..558234	+	236	57238285	purC	CJE0619	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
606	 28.05	0	558243..558488	+	81	57238284	purS	CJE0620	-	phosphoribosylformylglycinamidine synthase, purS protein
607	 31.79	0	558490..559137	+	215	57238283	purQ	CJE0621	-	phosphoribosylformylglycinamidine synthase subunit I
608	 28.11	0	559221..560330	+	369	57238282	-	CJE0622	-	hypothetical protein
609	 28.86	0	560311..561003	+	230	57238281	-	CJE0623	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
610	 27.37	0	560997..561365	+	122	57238280	-	CJE0624	-	hypothetical protein
611	 29.45	0	561438..563264	+	608	57238279	htpG	CJE0625	-	heat shock protein 90
612	 34.59	+1	563261..563578	+	105	57238278	-	CJE0626	-	hypothetical protein
613	 27.36	0	563578..564012	+	144	57238277	-	CJE0627	-	hypothetical protein
614	 29.04	0	564133..565785	+	550	57238276	-	CJE0628	-	Na/Pi-cotransporter, putative
615	 30.80	0	565800..567539	-	579	57238275	-	CJE0629	-	penicillin-binding protein
616	 30.30	0	567597..567893	-	98	57238274	fliE	CJE0630	-	flagellar hook-basal body protein FliE
617	 33.94	0	567900..568394	-	164	57238273	flgC	CJE0631	-	flagellar basal body rod protein FlgC
618	 31.48	0	568404..568835	-	143	57238272	flgB	CJE0632	-	flagellar basal body rod protein FlgB
619	 29.68	0	568915..569817	-	300	57238271	-	CJE0633	-	hypothetical protein
620	 25.05	-1	569831..572401	+	856	57238270	-	CJE0634	-	hypothetical protein
621	 32.38	0	572518..574722	+	734	57238269	icd	CJE0635	-	isocitrate dehydrogenase, NADP-dependent
622	 30.90	0	574719..575621	+	300	57238268	mdh	CJE0636	-	malate dehydrogenase
623	 34.62	+1	575622..576785	+	387	57238267	sucC	CJE0637	-	succinyl-CoA synthase, beta subunit
624	 37.82	+1	576795..577664	+	289	57238266	sucD	CJE0638	-	succinyl-CoA synthase, alpha subunit
625	 40.71	+2	577678..577989	+	103	57238265	oorD	CJE0639	-	2-oxoglutarate-acceptor oxidoreductase subunit OorD
626	 36.00	+1	577998..579122	+	374	57238264	oorA	CJE0640	-	2-oxoglutarate-acceptor oxidoreductase subunit OorA
627	 34.63	+1	579123..579968	+	281	57238263	oorB	CJE0641	-	2-oxoglutarate-acceptor oxidoreductase subunit OorB
628	 36.20	+1	579965..580522	+	185	57238262	oorC	CJE0642	-	2-oxoglutarate-acceptor oxidoreductase subunit OorC
629	 26.89	0	580661..580924	+	87	57238261	-	CJE0643	-	hypothetical protein
630	 27.56	0	580927..581463	+	178	57238260	-	CJE0644	-	hypothetical protein
631	 28.30	0	581477..582370	+	297	57238259	-	CJE0645	-	polyprenyl synthetase family protein
632	 30.79	0	582370..583668	+	432	57238258	hemA	CJE0646	-	glutamyl-tRNA reductase
30.10	MEAN

3.94	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.